Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46900 * 90.00436 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00310 * 9 7 5 12 12 H 1.48500 * 109.47001 * 330.00467 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 C 1.33390 * 125.20706 * 89.99860 * 19 18 17 21 21 C 1.38421 * 114.92181 * 179.97438 * 20 19 18 22 22 C 1.33386 * 114.92173 * 0.02562 * 21 20 19 23 23 S 1.75882 * 109.59356 * 359.75512 * 22 21 20 24 24 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 25 25 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 26 26 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 27 27 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 28 28 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 29 29 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 30 30 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 31 31 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 32 32 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 33 33 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 35 35 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 36 36 H 1.08000 * 122.54092 * 359.95431 * 20 19 18 37 37 H 1.07998 * 122.53927 * 180.02562 * 21 20 19 38 38 H 1.08004 * 125.20255 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4371 2.1156 2.0940 11 1 6.4348 -0.3083 2.1658 12 1 6.6135 0.8414 0.0382 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 6 1.2270 8.4853 -3.7533 21 6 0.9052 9.8094 -3.5101 22 6 -0.3263 10.0111 -3.0388 23 16 -1.1592 8.4695 -2.8862 24 1 -0.3634 0.5828 -0.8464 25 1 -0.3634 -1.0244 -0.0813 26 1 -0.3632 0.4417 0.9280 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8229 -0.0595 2.9545 30 1 2.2975 1.8656 -1.9983 31 1 0.8734 3.7759 -0.2619 32 1 2.5415 3.9598 -0.8553 33 1 1.0730 6.0711 -1.6605 34 1 1.0382 5.8958 -4.4792 35 1 -0.6296 5.7127 -3.8849 36 1 2.1908 8.1824 -4.1351 37 1 1.5986 10.6179 -3.6883 38 1 -0.7489 10.9741 -2.7931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -8.859210 kcal Electronic energy + Delta-G solvation = -19194.908408 eV Core-core repulsion = 16163.776811 eV Total energy + Delta-G solvation = -3031.131597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.41705 -38.08883 -35.97511 -34.63673 -32.46363 -31.19721 -30.50580 -27.52831 -26.22507 -24.58024 -23.09324 -22.34337 -20.21661 -19.56018 -19.49718 -17.75263 -16.78922 -16.29045 -16.00437 -15.49725 -15.12132 -14.74294 -14.08386 -13.72940 -13.49972 -13.19313 -13.09983 -12.90584 -12.55357 -12.44948 -12.11087 -11.93713 -11.66313 -11.20994 -11.15676 -11.02113 -10.87981 -10.67140 -10.17086 -9.80018 -9.55834 -9.43389 -9.09681 -8.98907 -8.91729 -8.75791 -8.39414 -7.27264 -6.01684 -4.15450 0.62034 1.32221 1.70881 2.39481 3.03783 3.25095 3.33053 3.36119 3.47574 4.37702 4.40602 4.76202 5.00493 5.19683 5.23515 5.28721 5.37430 5.51096 5.62063 5.82241 5.95799 5.96453 6.15027 6.17082 6.44280 6.49307 6.57763 6.76339 7.11123 7.23927 7.42077 7.55118 7.67740 7.77435 8.08117 8.11309 8.29717 8.53852 8.65440 8.97372 9.52486 10.98108 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.003300 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.992102 B = 8482.449865 C = 9204.829786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.051 3.949 15 C 0.514 3.486 16 O -0.527 6.527 17 N -0.738 5.738 18 C 0.194 3.806 19 C -0.197 4.197 20 C -0.119 4.119 21 C -0.138 4.138 22 C -0.212 4.212 23 S 0.114 5.886 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.262 0.738 30 H 0.337 0.663 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.401 0.599 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 18.160 -8.346 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.082 4.082 15 C 0.301 3.699 16 O -0.401 6.401 17 N -0.394 5.394 18 C 0.069 3.931 19 C -0.315 4.315 20 C -0.151 4.151 21 C -0.169 4.169 22 C -0.348 4.348 23 S 0.378 5.622 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.944 16.978 -8.290 20.904 hybrid contribution 3.529 1.157 0.182 3.718 sum -5.415 18.135 -8.108 20.589 Atomic orbital electron populations 1.21725 0.98964 0.98630 1.00387 1.21480 0.92196 0.98951 1.01732 1.19185 0.92878 0.91493 0.85613 0.94919 1.21877 0.92711 1.38641 1.05571 0.92808 1.24930 0.97972 0.94865 0.95677 1.69875 1.34865 1.38048 1.09377 0.86643 0.85964 0.77544 0.78127 1.20765 1.21120 1.19967 1.60623 1.55972 1.03428 1.10280 1.21652 1.00423 0.92679 0.93432 1.21272 0.76973 0.80927 0.90750 1.90665 1.49440 1.61294 1.38710 1.46180 1.69211 1.07960 1.16006 1.19546 1.00663 0.84456 0.88443 1.24570 0.97906 0.99401 1.09615 1.20247 1.00256 0.92218 1.02337 1.20199 0.96794 0.97284 1.02576 1.25726 0.98969 1.01558 1.08517 1.84466 1.16044 0.97712 1.63967 0.92960 0.95595 0.94622 0.94961 0.89096 0.92821 0.84561 0.89107 0.92431 0.76537 0.89836 0.90631 0.83985 0.84169 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.85 37.16 0.37 -2.61 16 2 C -0.10 -2.55 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.30 1.97 -68.87 -0.14 5.16 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.55 -14.57 8.47 -34.44 -0.29 -14.86 16 6 H 0.05 1.42 7.73 -52.48 -0.41 1.02 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.58 11.29 55.43 0.63 -23.96 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.67 -14.58 5.17 -109.22 -0.56 -15.14 16 14 C 0.05 0.93 5.99 -4.98 -0.03 0.90 16 15 C 0.51 8.62 7.88 -10.99 -0.09 8.53 16 16 O -0.53 -10.72 16.32 5.56 0.09 -10.63 16 17 N -0.74 -9.36 5.55 -61.48 -0.34 -9.70 16 18 C 0.19 2.21 6.16 -5.20 -0.03 2.18 16 19 C -0.20 -1.91 5.88 -36.00 -0.21 -2.12 16 20 C -0.12 -1.05 10.05 -41.21 -0.41 -1.46 16 21 C -0.14 -1.07 10.18 -41.21 -0.42 -1.49 16 22 C -0.21 -1.61 11.23 29.04 0.33 -1.28 16 23 S 0.11 1.01 23.33 -107.50 -2.51 -1.50 16 24 H 0.05 1.11 7.64 -51.93 -0.40 0.71 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.34 7.57 8.29 -39.29 -0.33 7.25 16 31 H 0.09 1.56 7.92 -51.93 -0.41 1.15 16 32 H 0.06 1.03 8.11 -51.92 -0.42 0.61 16 33 H 0.40 4.29 8.46 -40.82 -0.35 3.94 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -29.91 335.92 -9.36 -39.27 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.53 Total: 8.79 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.17 Total: -8.00 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.28 Total: -48.80 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.91 -9.36 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.410 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds