Wall clock time and date at job start Tue Mar 31 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46900 * 90.00436 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00310 * 9 7 5 12 12 H 1.48500 * 109.47001 * 330.00467 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00569 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47303 * 180.02562 * 18 17 15 20 20 C 1.33390 * 125.20706 * 89.99860 * 19 18 17 21 21 C 1.38421 * 114.92181 * 179.97438 * 20 19 18 22 22 C 1.33386 * 114.92173 * 0.02562 * 21 20 19 23 23 S 1.75882 * 109.59356 * 359.75512 * 22 21 20 24 24 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 25 25 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 26 26 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 27 27 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 28 28 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 29 29 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 30 30 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 31 31 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 32 32 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 33 33 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 34 34 H 1.09001 * 109.46595 * 299.99738 * 18 17 15 35 35 H 1.08997 * 109.47473 * 59.99651 * 18 17 15 36 36 H 1.08000 * 122.54092 * 359.95431 * 20 19 18 37 37 H 1.07998 * 122.53927 * 180.02562 * 21 20 19 38 38 H 1.08004 * 125.20255 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4371 2.1156 2.0940 11 1 6.4348 -0.3083 2.1658 12 1 6.6135 0.8414 0.0382 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 6 0.3564 6.1186 -3.6585 19 6 0.2567 7.6117 -3.4802 20 6 1.2270 8.4853 -3.7533 21 6 0.9052 9.8094 -3.5101 22 6 -0.3263 10.0111 -3.0388 23 16 -1.1592 8.4695 -2.8862 24 1 -0.3634 0.5828 -0.8464 25 1 -0.3634 -1.0244 -0.0813 26 1 -0.3632 0.4417 0.9280 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8229 -0.0595 2.9545 30 1 2.2975 1.8656 -1.9983 31 1 0.8734 3.7759 -0.2619 32 1 2.5415 3.9598 -0.8553 33 1 1.0730 6.0711 -1.6605 34 1 1.0382 5.8958 -4.4792 35 1 -0.6296 5.7127 -3.8849 36 1 2.1908 8.1824 -4.1351 37 1 1.5986 10.6179 -3.6883 38 1 -0.7489 10.9741 -2.7931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:41 Heat of formation + Delta-G solvation = -28.344098 kcal Electronic energy + Delta-G solvation = -19195.753336 eV Core-core repulsion = 16163.776811 eV Total energy + Delta-G solvation = -3031.976525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72037 -38.84700 -37.76888 -35.78635 -34.36329 -32.95870 -31.51177 -29.11279 -27.50852 -26.01706 -24.36782 -23.68446 -21.55936 -21.36954 -20.20846 -18.91925 -18.48599 -17.59176 -17.01053 -16.76603 -16.54323 -16.14335 -15.58330 -15.34024 -14.86970 -14.57099 -14.16590 -13.90618 -13.69883 -13.62681 -13.44364 -13.21195 -13.07232 -13.03938 -12.78337 -12.67167 -12.50624 -12.06731 -11.67557 -11.57531 -11.49105 -11.08622 -10.84069 -10.44614 -10.14470 -9.71645 -9.42715 -9.06970 -8.04547 -6.27018 -0.05197 0.65371 1.07000 1.39913 1.42847 1.51575 1.67658 1.72832 2.32421 2.42539 3.15684 3.60820 3.77800 3.98771 4.19225 4.25640 4.46153 4.56475 4.64491 4.65917 4.68023 4.74696 4.78448 4.93873 5.16804 5.17698 5.32920 5.36593 5.43250 5.51329 5.53961 5.62181 5.76704 6.07340 6.17518 6.32703 6.51672 6.77172 6.97550 7.27850 7.44510 8.92145 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.003300 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.992102 B = 8482.449865 C = 9204.829786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.224 3.776 4 H 0.011 0.989 5 C -0.563 4.563 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.051 3.949 15 C 0.521 3.479 16 O -0.566 6.566 17 N -0.719 5.719 18 C 0.198 3.802 19 C -0.216 4.216 20 C -0.114 4.114 21 C -0.147 4.147 22 C -0.202 4.202 23 S 0.099 5.901 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.263 0.737 30 H 0.332 0.668 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 20.058 -8.611 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.029 0.971 5 C -0.602 4.602 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.303 5.303 14 C -0.082 4.082 15 C 0.308 3.692 16 O -0.443 6.443 17 N -0.373 5.373 18 C 0.073 3.927 19 C -0.333 4.333 20 C -0.146 4.146 21 C -0.177 4.177 22 C -0.337 4.337 23 S 0.363 5.637 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.181 0.819 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.596 18.931 -8.547 22.479 hybrid contribution 3.393 0.676 0.252 3.469 sum -5.203 19.607 -8.295 21.916 Atomic orbital electron populations 1.21577 0.96590 0.99921 1.00352 1.21375 0.94310 0.98503 0.99998 1.18966 0.91862 0.91594 0.86022 0.97084 1.22148 0.93865 1.38600 1.05562 0.93144 1.25640 1.02069 0.94598 0.95455 1.69993 1.36431 1.38556 1.09749 0.85668 0.80984 0.77631 0.77989 1.20026 1.20968 1.19799 1.60530 1.55406 1.05657 1.08720 1.21681 1.01000 0.90749 0.94723 1.20906 0.76729 0.81998 0.89568 1.90652 1.51500 1.62506 1.39687 1.45992 1.67582 1.06661 1.17046 1.19509 1.00024 0.85734 0.87423 1.24350 0.98890 0.98350 1.11752 1.20486 1.00276 0.92686 1.01142 1.20453 0.97358 0.97358 1.02528 1.26073 0.98634 1.01743 1.07290 1.84530 1.16137 0.98858 1.64179 0.92930 0.93650 0.94582 0.95743 0.91617 0.92788 0.85165 0.88197 0.92068 0.75157 0.90041 0.91412 0.83190 0.81938 0.79434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 9.85 71.98 0.71 -4.64 16 2 C -0.10 -5.07 5.45 30.60 0.17 -4.90 16 3 C 0.22 11.12 1.97 44.17 0.09 11.21 16 4 H 0.01 0.60 7.70 -2.39 -0.02 0.58 16 5 C -0.56 -30.04 8.47 25.60 0.22 -29.82 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.23 5.29 84.66 0.45 1.68 16 8 N -0.91 -50.94 11.29 21.45 0.24 -50.70 16 9 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.67 -29.38 5.17 -499.46 -2.58 -31.96 16 14 C 0.05 1.84 5.99 85.56 0.51 2.36 16 15 C 0.52 17.30 7.88 87.66 0.69 17.99 16 16 O -0.57 -23.08 16.32 -3.03 -0.05 -23.13 16 17 N -0.72 -17.58 5.55 -466.81 -2.59 -20.17 16 18 C 0.20 4.38 6.16 85.63 0.53 4.91 16 19 C -0.22 -3.90 5.88 24.59 0.14 -3.76 16 20 C -0.11 -1.77 10.05 21.22 0.21 -1.56 16 21 C -0.15 -1.88 10.18 21.21 0.22 -1.67 16 22 C -0.20 -2.52 11.23 66.72 0.75 -1.77 16 23 S 0.10 1.61 23.33 -56.49 -1.32 0.29 16 24 H 0.05 2.19 7.64 -2.39 -0.02 2.17 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 3.57 5.95 -2.39 -0.01 3.56 16 29 H 0.26 14.04 8.31 -92.72 -0.77 13.27 16 30 H 0.33 15.07 8.29 -89.69 -0.74 14.33 16 31 H 0.10 3.38 7.92 -2.39 -0.02 3.37 16 32 H 0.06 2.17 8.11 -2.38 -0.02 2.15 16 33 H 0.41 8.26 8.46 -92.71 -0.78 7.48 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -63.46 335.92 -0.04 -63.50 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.46 Total: 27.50 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.68 Total: -9.97 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -4.93 Total: -102.83 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -63.46 -0.04 -63.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.161 kcal (2) G-P(sol) polarization free energy of solvation -63.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds