Wall clock time and date at job start Tue Mar 31 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32446 * 120.36070 * 2 1 4 4 C 1.32530 * 120.87884 * 180.26146 * 3 2 1 5 5 S 1.76198 * 119.19219 * 179.76082 * 4 3 2 6 6 C 1.81002 * 100.00092 * 179.72480 * 5 4 3 7 7 C 1.52997 * 109.47326 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47127 * 300.00314 * 7 6 5 9 9 C 1.52999 * 109.47317 * 59.99825 * 7 6 5 10 10 C 1.50697 * 109.47466 * 179.97438 * 7 6 5 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 N 1.32551 * 121.61335 * 359.47483 * 4 3 2 19 19 C 1.32711 * 120.63684 * 0.26612 * 18 4 3 20 20 O 1.35516 * 120.45880 * 179.97438 * 19 18 4 21 21 C 1.38217 * 120.36458 * 179.75140 * 2 1 3 22 22 C 1.50699 * 120.73883 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.47168 * 270.25280 * 1 2 3 24 24 H 1.09000 * 109.47569 * 30.25077 * 1 2 3 25 25 H 1.08999 * 109.47408 * 150.25336 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 6 5 4 27 27 H 1.09001 * 109.47171 * 60.00111 * 6 5 4 28 28 H 1.08993 * 109.46955 * 60.00011 * 8 7 6 29 29 H 1.09000 * 109.47050 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.47002 * 299.99574 * 8 7 6 31 31 H 1.09002 * 109.46716 * 60.00091 * 9 7 6 32 32 H 1.09000 * 109.47486 * 180.02562 * 9 7 6 33 33 H 1.09001 * 109.47362 * 300.00732 * 9 7 6 34 34 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 35 35 H 0.96693 * 114.00131 * 89.99945 * 20 19 18 36 36 H 1.08994 * 109.47467 * 269.97947 * 22 21 2 37 37 H 1.09004 * 109.47293 * 29.98179 * 22 21 2 38 38 H 1.08999 * 109.46922 * 149.97994 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1764 1.1428 0.0000 4 6 3.5016 1.1548 -0.0052 5 16 4.3470 2.7007 -0.0114 6 6 6.0618 2.1212 -0.0084 7 6 7.0068 3.3245 -0.0138 8 6 6.7547 4.1654 -1.2670 9 6 6.7543 4.1768 1.2315 10 6 8.4344 2.8420 -0.0107 11 1 8.6466 1.7831 -0.0058 12 6 9.4698 3.7525 -0.0151 13 7 9.2115 5.0420 -0.0215 14 14 11.2395 3.1545 -0.0106 15 1 11.4851 2.3260 -1.2183 16 1 12.1567 4.3223 -0.0171 17 1 11.4835 2.3396 1.2066 18 7 4.2066 0.0324 -0.0002 19 6 3.5994 -1.1477 0.0049 20 8 4.3237 -2.2930 0.0095 21 6 2.2056 -1.1926 0.0052 22 6 1.4774 -2.5119 0.0103 23 1 -0.3634 0.0045 1.0277 24 1 -0.3634 0.8877 -0.5177 25 1 -0.3634 -0.8922 -0.5099 26 1 6.2412 1.5218 0.8841 27 1 6.2418 1.5144 -0.8958 28 1 5.7221 4.5143 -1.2687 29 1 7.4276 5.0228 -1.2705 30 1 6.9346 3.5582 -2.1542 31 1 6.9339 3.5778 2.1242 32 1 7.4273 5.0343 1.2274 33 1 5.7217 4.5258 1.2298 34 1 9.9399 5.6826 -0.0250 35 1 4.5342 -2.6217 0.8941 36 1 1.3017 -2.8260 1.0391 37 1 0.5227 -2.4020 -0.5041 38 1 2.0811 -3.2621 -0.5005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584064493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:08 Heat of formation + Delta-G solvation = -10.146232 kcal Electronic energy + Delta-G solvation = -19806.308520 eV Core-core repulsion = 16775.121114 eV Total energy + Delta-G solvation = -3031.187407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07156 -37.68361 -35.99264 -34.77466 -32.63165 -31.52313 -29.24107 -27.57697 -26.04316 -25.67265 -25.11506 -23.12731 -22.69817 -19.37260 -18.57530 -18.07757 -16.89553 -15.95823 -15.67306 -14.76094 -14.71426 -14.51799 -14.00417 -13.63404 -13.54671 -13.15362 -12.92618 -12.85276 -12.65294 -12.26478 -12.22145 -11.89396 -11.38976 -11.25371 -10.87808 -10.83343 -10.58217 -10.34374 -10.27455 -10.10623 -9.90247 -9.61622 -9.46194 -9.43089 -9.18099 -8.66224 -8.37007 -7.20638 -5.99174 -4.09965 0.77399 1.02799 1.72039 2.81808 3.31059 3.35633 3.38423 3.40894 3.69754 4.17748 4.41648 4.61656 4.74280 4.78822 5.16062 5.23255 5.26930 5.36349 5.41050 5.66962 5.68678 5.80721 6.06927 6.17352 6.22588 6.57644 6.83994 6.92978 6.94859 7.05613 7.06890 7.30077 7.36939 7.59927 7.72526 8.00651 8.03784 8.16120 8.40164 8.88959 9.55106 11.02019 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.004251 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.715932 B = 6584.954339 C = 7376.478123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.195 3.805 3 N -0.513 5.513 4 C 0.316 3.684 5 S 0.007 5.993 6 C -0.075 4.075 7 C 0.078 3.922 8 C -0.136 4.136 9 C -0.135 4.135 10 C -0.504 4.504 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 N -0.542 5.542 19 C 0.374 3.626 20 O -0.474 6.474 21 C -0.236 4.236 22 C -0.097 4.097 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.405 0.595 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.407 -11.517 1.760 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.046 3.954 3 N -0.232 5.232 4 C -0.057 4.057 5 S 0.247 5.753 6 C -0.224 4.224 7 C 0.076 3.924 8 C -0.194 4.194 9 C -0.193 4.193 10 C -0.543 4.543 11 H 0.075 0.925 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.722 3.278 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.270 5.270 19 C 0.183 3.817 20 O -0.281 6.281 21 C -0.246 4.246 22 C -0.155 4.155 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.036 0.964 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.219 -9.258 1.157 17.851 hybrid contribution 1.262 -2.647 0.470 2.970 sum -13.957 -11.906 1.627 18.417 Atomic orbital electron populations 1.20807 0.87751 1.04065 1.03667 1.21522 0.97392 0.87101 0.89376 1.68452 1.07790 1.29430 1.17508 1.25536 0.89624 0.97666 0.92866 1.86108 1.03990 0.97803 1.87429 1.24152 0.89151 1.03902 1.05167 1.18083 0.92224 0.88673 0.93424 1.21916 0.98035 1.02116 0.97287 1.21913 0.98030 1.02099 0.97262 1.20954 0.89271 0.92936 1.51180 0.92519 1.24879 0.98879 0.94862 0.94816 1.69805 1.31726 1.00460 1.50303 0.86621 0.84383 0.78146 0.78628 1.20297 1.21271 1.20313 1.68465 1.41651 0.98080 1.18811 1.19298 0.86666 0.85377 0.90408 1.84673 1.74208 1.35266 1.33999 1.21345 0.94147 0.98286 1.10854 1.20553 0.99903 0.92693 1.02322 0.89616 0.89783 0.89914 0.90155 0.90091 0.96443 0.89406 0.95294 0.95327 0.89413 0.96452 0.92880 0.73633 0.91239 0.90946 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.83 36.00 0.35 -0.56 16 2 C 0.20 2.62 6.81 -82.34 -0.56 2.06 16 3 N -0.51 -8.72 10.33 -9.74 -0.10 -8.82 16 4 C 0.32 5.94 7.85 -90.87 -0.71 5.23 16 5 S 0.01 0.14 19.30 -107.50 -2.07 -1.93 16 6 C -0.08 -1.64 3.75 37.16 0.14 -1.50 16 7 C 0.08 1.89 0.52 -155.66 -0.08 1.81 16 8 C -0.14 -3.25 8.01 37.16 0.30 -2.96 16 9 C -0.14 -3.22 8.01 37.16 0.30 -2.92 16 10 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 13 N -0.88 -24.02 9.35 55.43 0.52 -23.50 16 14 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 N -0.54 -9.99 9.16 -13.50 -0.12 -10.11 16 19 C 0.37 5.63 7.80 -16.72 -0.13 5.50 16 20 O -0.47 -5.89 12.74 -18.24 -0.23 -6.13 16 21 C -0.24 -2.96 5.93 -104.18 -0.62 -3.58 16 22 C -0.10 -0.79 9.46 36.01 0.34 -0.45 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.52 6.06 -51.93 -0.31 0.20 16 26 H 0.08 1.77 8.11 -51.92 -0.42 1.35 16 27 H 0.08 1.82 8.11 -51.92 -0.42 1.40 16 28 H 0.02 0.38 6.91 -51.93 -0.36 0.02 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 33 H 0.02 0.37 6.91 -51.93 -0.36 0.01 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.40 2.95 9.06 45.56 0.41 3.37 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.47 6.06 -51.93 -0.31 0.15 16 38 H 0.07 0.60 7.62 -51.93 -0.40 0.21 16 LS Contribution 320.64 15.07 4.83 4.83 Total: -1.00 -30.54 320.64 -7.70 -38.25 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.46 Total: 0.87 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.04 Total: -9.35 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.29 Total: -42.43 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.23 Total: -6.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.07 Total: -1.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.54 -7.70 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584064493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.100 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds