Wall clock time and date at job start Tue Mar 31 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 N 1.46501 * 109.47143 * 90.00205 * 7 6 2 9 9 C 1.34772 * 120.00129 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99838 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00348 * 180.02562 * 9 8 7 12 12 C 1.52990 * 109.47464 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47245 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47243 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47044 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00174 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00002 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47431 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47017 * 120.00215 * 19 17 15 22 22 H 1.48504 * 109.47326 * 240.00071 * 19 17 15 23 23 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 24 24 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 25 25 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 26 26 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 28 28 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 29 29 H 0.97001 * 119.99635 * 359.97438 * 8 7 6 30 30 H 1.09002 * 109.46632 * 299.99926 * 11 9 8 31 31 H 1.09004 * 109.47060 * 59.99126 * 11 9 8 32 32 H 1.08997 * 109.47549 * 299.99335 * 12 11 9 33 33 H 1.09004 * 109.47373 * 59.99712 * 12 11 9 34 34 H 1.09000 * 109.47059 * 299.99818 * 13 12 11 35 35 H 1.08999 * 109.47336 * 60.00048 * 13 12 11 36 36 H 1.09000 * 109.46884 * 299.99851 * 14 13 12 37 37 H 1.08999 * 109.46976 * 59.99753 * 14 13 12 38 38 H 0.96998 * 120.00441 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 7 1.5132 -2.9880 -1.3728 9 6 1.0341 -4.2238 -1.6174 10 8 0.7456 -4.9559 -0.6945 11 6 0.8582 -4.6963 -3.0375 12 6 0.3045 -6.1225 -3.0355 13 6 0.1253 -6.6021 -4.4774 14 6 -0.4290 -8.0281 -4.4754 15 6 -0.6061 -8.5001 -5.8956 16 1 -0.3495 -7.8481 -6.7173 17 6 -1.0959 -9.7645 -6.1458 18 7 -1.4090 -10.5584 -5.1451 19 14 -1.3161 -10.3494 -7.9061 20 1 -0.8949 -9.2752 -8.8410 21 1 -0.4836 -11.5578 -8.1340 22 1 -2.7443 -10.6803 -8.1428 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 4.2059 1.8027 0.0057 27 1 2.3811 -3.1881 0.5260 28 1 0.7217 -2.5441 0.5181 29 1 1.7436 -2.4023 -2.1109 30 1 0.1625 -4.0368 -3.5562 31 1 1.8215 -4.6816 -3.5473 32 1 1.0005 -6.7819 -2.5170 33 1 -0.6588 -6.1377 -2.5256 34 1 -0.5710 -5.9428 -4.9957 35 1 1.0883 -6.5869 -4.9877 36 1 0.2669 -8.6877 -3.9570 37 1 -1.3921 -8.0429 -3.9652 38 1 -1.7539 -11.4477 -5.3210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588156856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:10 Heat of formation + Delta-G solvation = -21.626434 kcal Electronic energy + Delta-G solvation = -18574.848952 eV Core-core repulsion = 15543.163726 eV Total energy + Delta-G solvation = -3031.685226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48212 -39.57754 -35.53456 -34.78830 -32.69801 -32.34356 -30.11219 -28.97212 -26.22997 -25.36660 -24.28587 -22.24120 -20.41465 -19.97895 -19.38190 -18.63293 -16.98572 -16.42153 -16.09097 -15.95436 -15.54256 -15.03335 -14.44792 -14.37909 -13.98310 -13.68901 -13.34632 -13.14934 -12.95758 -12.61660 -12.54699 -12.10780 -11.69436 -11.60125 -11.58524 -10.99010 -10.53571 -10.48056 -10.40772 -10.17230 -10.09131 -9.68096 -9.60858 -9.28289 -9.26840 -9.15745 -8.95577 -8.30059 -5.94650 -3.97005 0.14726 0.87185 1.26900 2.26168 2.67513 3.18537 3.33594 3.40800 3.44768 3.74440 4.25932 4.49601 4.59785 4.67835 4.87424 5.04374 5.19360 5.30450 5.35369 5.36894 5.40278 5.41083 5.48633 5.83713 5.85487 6.14342 6.16457 6.30917 6.55269 6.84691 7.02582 7.20467 7.22348 7.35832 7.75280 7.91039 8.06936 8.19239 8.48838 9.10987 9.66630 11.16733 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041442 B = 0.002280 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.486816 B =12277.403042 C =12322.689821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.085 3.915 3 N -0.471 5.471 4 C 0.025 3.975 5 S 0.139 5.861 6 C -0.249 4.249 7 C 0.201 3.799 8 N -0.736 5.736 9 C 0.514 3.486 10 O -0.533 6.533 11 C -0.138 4.138 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.201 0.799 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.401 0.599 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.426 24.975 11.308 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 N -0.185 5.185 4 C -0.273 4.273 5 S 0.393 5.607 6 C -0.371 4.371 7 C 0.075 3.925 8 N -0.390 5.390 9 C 0.302 3.698 10 O -0.408 6.408 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.218 0.782 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.235 0.765 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.917 24.285 12.039 29.221 hybrid contribution -0.703 0.111 -1.268 1.454 sum 10.214 24.396 10.771 28.556 Atomic orbital electron populations 1.20456 0.86692 1.03682 1.03464 1.20372 0.98482 0.86031 0.99978 1.66260 1.05063 1.31454 1.15703 1.28423 0.95324 1.00371 1.03204 1.84208 1.06455 1.03144 1.66875 1.25726 0.95570 1.00326 1.15448 1.19448 1.01157 0.86970 0.84912 1.46204 1.68388 1.16767 1.07659 1.21148 0.75689 0.80341 0.92664 1.90720 1.49151 1.54392 1.46576 1.21799 1.03546 1.00430 0.91999 1.21457 1.01360 0.92102 0.99219 1.21651 1.00075 1.00040 0.93024 1.19102 0.96173 0.89704 0.96809 1.21321 1.42546 0.99220 0.92660 0.92714 1.25048 0.95707 0.96946 0.96935 1.69981 1.44567 1.08438 1.30484 0.86557 0.77705 0.78670 0.85174 1.19788 1.21063 1.21053 0.90168 0.90289 0.90370 0.78215 0.90293 0.89291 0.76504 0.89054 0.89088 0.91779 0.91759 0.93473 0.93483 0.96585 0.96579 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.06 36.01 0.36 -0.23 16 2 C 0.09 0.74 6.74 -84.22 -0.57 0.17 16 3 N -0.47 -4.29 10.53 -11.90 -0.13 -4.42 16 4 C 0.02 0.16 12.23 51.58 0.63 0.79 16 5 S 0.14 0.91 23.22 -107.50 -2.50 -1.59 16 6 C -0.25 -2.02 5.96 -35.92 -0.21 -2.24 16 7 C 0.20 1.83 5.89 -5.19 -0.03 1.80 16 8 N -0.74 -7.10 5.55 -61.47 -0.34 -7.44 16 9 C 0.51 6.83 7.83 -10.99 -0.09 6.75 16 10 O -0.53 -9.34 15.98 5.55 0.09 -9.25 16 11 C -0.14 -1.78 5.70 -27.89 -0.16 -1.93 16 12 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 15 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.52 6.71 -51.92 -0.35 0.17 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.20 0.65 8.06 -52.48 -0.42 0.22 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.83 6.75 -51.93 -0.35 0.48 16 29 H 0.40 3.02 8.46 -40.82 -0.35 2.67 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -34.60 338.54 -8.58 -43.18 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -5.65 Total: -2.99 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.87 Total: -12.67 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.27 Total: -38.70 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.60 -8.58 -43.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588156856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.552 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds