Wall clock time and date at job start Tue Mar 31 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 N 1.46501 * 109.47143 * 90.00205 * 7 6 2 9 9 C 1.34772 * 120.00129 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99838 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00348 * 180.02562 * 9 8 7 12 12 C 1.52990 * 109.47464 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47245 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47243 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47044 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00174 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00002 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99833 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47431 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47017 * 120.00215 * 19 17 15 22 22 H 1.48504 * 109.47326 * 240.00071 * 19 17 15 23 23 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 24 24 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 25 25 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 26 26 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 28 28 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 29 29 H 0.97001 * 119.99635 * 359.97438 * 8 7 6 30 30 H 1.09002 * 109.46632 * 299.99926 * 11 9 8 31 31 H 1.09004 * 109.47060 * 59.99126 * 11 9 8 32 32 H 1.08997 * 109.47549 * 299.99335 * 12 11 9 33 33 H 1.09004 * 109.47373 * 59.99712 * 12 11 9 34 34 H 1.09000 * 109.47059 * 299.99818 * 13 12 11 35 35 H 1.08999 * 109.47336 * 60.00048 * 13 12 11 36 36 H 1.09000 * 109.46884 * 299.99851 * 14 13 12 37 37 H 1.08999 * 109.46976 * 59.99753 * 14 13 12 38 38 H 0.96998 * 120.00441 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 7 1.5132 -2.9880 -1.3728 9 6 1.0341 -4.2238 -1.6174 10 8 0.7456 -4.9559 -0.6945 11 6 0.8582 -4.6963 -3.0375 12 6 0.3045 -6.1225 -3.0355 13 6 0.1253 -6.6021 -4.4774 14 6 -0.4290 -8.0281 -4.4754 15 6 -0.6061 -8.5001 -5.8956 16 1 -0.3495 -7.8481 -6.7173 17 6 -1.0959 -9.7645 -6.1458 18 7 -1.4090 -10.5584 -5.1451 19 14 -1.3161 -10.3494 -7.9061 20 1 -0.8949 -9.2752 -8.8410 21 1 -0.4836 -11.5578 -8.1340 22 1 -2.7443 -10.6803 -8.1428 23 1 -0.3633 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5135 26 1 4.2059 1.8027 0.0057 27 1 2.3811 -3.1881 0.5260 28 1 0.7217 -2.5441 0.5181 29 1 1.7436 -2.4023 -2.1109 30 1 0.1625 -4.0368 -3.5562 31 1 1.8215 -4.6816 -3.5473 32 1 1.0005 -6.7819 -2.5170 33 1 -0.6588 -6.1377 -2.5256 34 1 -0.5710 -5.9428 -4.9957 35 1 1.0883 -6.5869 -4.9877 36 1 0.2669 -8.6877 -3.9570 37 1 -1.3921 -8.0429 -3.9652 38 1 -1.7539 -11.4477 -5.3210 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588156856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:09 Heat of formation + Delta-G solvation = -45.130280 kcal Electronic energy + Delta-G solvation = -18575.868155 eV Core-core repulsion = 15543.163726 eV Total energy + Delta-G solvation = -3032.704429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16341 -40.54542 -36.77355 -36.15354 -34.60112 -33.13661 -31.57173 -29.93034 -27.57997 -26.34536 -25.15101 -23.85262 -21.79900 -21.35279 -20.02318 -19.20431 -18.41703 -17.93946 -17.18118 -16.96418 -16.50763 -16.33795 -15.70769 -15.60737 -14.80853 -14.58653 -14.53552 -14.32200 -13.77535 -13.64709 -13.57000 -13.48399 -13.25036 -13.08463 -12.83209 -12.30795 -12.19849 -12.13504 -12.11584 -11.36078 -11.35987 -11.18248 -10.94472 -10.68059 -10.54890 -10.32686 -10.17414 -9.77134 -8.18105 -6.29999 -0.40949 0.33902 0.72818 1.40994 1.41820 1.55294 1.63742 1.66173 2.30890 2.42856 3.14682 3.24993 3.61340 3.85817 3.97524 4.08406 4.17357 4.23859 4.40957 4.52575 4.68448 4.70424 4.74112 4.81832 4.86652 4.90107 4.92712 5.21504 5.27230 5.30193 5.34840 5.41953 5.58895 5.79903 5.89565 6.26503 6.48604 6.68204 6.88847 7.22386 7.39561 8.94346 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.041442 B = 0.002280 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.486816 B =12277.403042 C =12322.689821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 N -0.503 5.503 4 C 0.032 3.968 5 S 0.164 5.836 6 C -0.264 4.264 7 C 0.204 3.796 8 N -0.716 5.716 9 C 0.516 3.484 10 O -0.583 6.583 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.232 0.768 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.415 0.585 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.060 0.940 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.611 27.013 9.656 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 N -0.217 5.217 4 C -0.265 4.265 5 S 0.419 5.581 6 C -0.386 4.386 7 C 0.078 3.922 8 N -0.369 5.369 9 C 0.304 3.696 10 O -0.463 6.463 11 C -0.167 4.167 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.205 4.205 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.181 1.181 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.248 0.752 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.251 0.749 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.130 26.380 10.371 30.832 hybrid contribution -1.019 -0.476 -0.689 1.319 sum 11.112 25.904 9.682 29.803 Atomic orbital electron populations 1.20486 0.86271 1.03803 1.03793 1.20568 0.99072 0.86181 0.99676 1.66317 1.06174 1.31812 1.17406 1.29009 0.95121 1.01373 1.00985 1.84136 1.04859 1.02853 1.66222 1.25573 0.96752 0.99446 1.16781 1.19373 1.00965 0.87582 0.84232 1.45997 1.66637 1.15666 1.08634 1.21161 0.75299 0.80885 0.92230 1.90712 1.51673 1.56025 1.47889 1.21673 1.05332 0.97356 0.92387 1.21249 1.00263 0.95169 0.96757 1.21449 1.00528 0.96212 0.95149 1.19067 0.94180 0.93230 0.95463 1.21785 1.42459 0.99796 0.93729 0.91617 1.26096 0.95197 0.97183 1.02016 1.70134 1.45456 1.08972 1.33291 0.85336 0.77778 0.78385 0.79143 1.18110 1.20496 1.20488 0.89684 0.90136 0.90289 0.75162 0.90972 0.89714 0.74856 0.86308 0.86385 0.93781 0.93720 0.92095 0.92116 0.99686 0.99669 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.06 71.24 0.72 -0.42 16 2 C 0.08 1.27 6.74 41.52 0.28 1.55 16 3 N -0.50 -8.32 10.53 -191.55 -2.02 -10.34 16 4 C 0.03 0.35 12.23 130.65 1.60 1.94 16 5 S 0.16 1.81 23.22 -56.49 -1.31 0.50 16 6 C -0.26 -3.93 5.96 24.64 0.15 -3.78 16 7 C 0.20 3.56 5.89 85.63 0.50 4.07 16 8 N -0.72 -12.66 5.55 -466.79 -2.59 -15.25 16 9 C 0.52 13.20 7.83 87.66 0.69 13.89 16 10 O -0.58 -20.77 15.98 -3.04 -0.05 -20.82 16 11 C -0.13 -3.02 5.70 29.84 0.17 -2.85 16 12 C -0.10 -3.41 4.50 30.59 0.14 -3.27 16 13 C -0.10 -3.88 5.15 30.60 0.16 -3.72 16 14 C 0.02 0.97 4.97 29.85 0.15 1.12 16 15 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 18 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 19 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.03 6.71 -2.38 -0.02 1.01 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.23 0.75 8.06 -2.91 -0.02 0.73 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.57 6.75 -2.39 -0.02 1.55 16 29 H 0.41 5.15 8.46 -92.71 -0.78 4.37 16 30 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -76.76 338.54 1.86 -74.90 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.27 Total: 5.50 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 5.24 Total: -22.55 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -4.32 Total: -84.41 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.31 Total: 0.50 kcal Total: -76.76 1.86 -74.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588156856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.768 kcal (2) G-P(sol) polarization free energy of solvation -76.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds