Wall clock time and date at job start Tue Mar 31 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47358 * 2 1 4 4 C 1.33435 * 122.71654 * 124.99607 * 3 2 1 5 5 S 1.76174 * 108.06150 * 179.97438 * 4 3 2 6 6 C 1.70965 * 90.33953 * 0.02562 * 5 4 3 7 7 N 1.39004 * 124.94084 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00271 * 0.02982 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27567 * 8 7 6 11 11 C 1.52996 * 109.47159 * 179.72352 * 10 8 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46834 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46874 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00298 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47201 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47632 * 119.99981 * 18 16 14 21 21 H 1.48511 * 109.47039 * 239.99735 * 18 16 14 22 22 N 1.29624 * 110.11159 * 0.26268 * 6 5 4 23 23 H 1.09006 * 109.47053 * 59.99871 * 1 2 3 24 24 H 1.08998 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47193 * 300.00124 * 1 2 3 26 26 H 1.08997 * 109.47193 * 239.99876 * 2 1 3 27 27 H 1.09000 * 109.47238 * 119.99745 * 2 1 3 28 28 H 1.08002 * 125.96882 * 359.97438 * 4 3 2 29 29 H 0.97000 * 119.99412 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 31 31 H 1.09000 * 109.47154 * 59.71645 * 10 8 7 32 32 H 1.09004 * 109.47066 * 299.99797 * 11 10 8 33 33 H 1.09000 * 109.47234 * 59.99288 * 11 10 8 34 34 H 1.09004 * 109.47131 * 299.99935 * 12 11 10 35 35 H 1.09003 * 109.47184 * 60.00331 * 12 11 10 36 36 H 1.08990 * 109.47421 * 299.99996 * 13 12 11 37 37 H 1.09002 * 109.47073 * 60.00711 * 13 12 11 38 38 H 0.96995 * 120.00587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.8799 1.8861 0.9197 5 16 3.2076 3.5781 0.5541 6 6 2.1706 3.4964 -0.8026 7 7 1.9034 4.5532 -1.6652 8 6 2.4812 5.7534 -1.4599 9 8 3.2340 5.9114 -0.5222 10 6 2.1866 6.9007 -2.3915 11 6 2.9585 8.1401 -1.9342 12 6 2.6599 9.3047 -2.8803 13 6 3.4313 10.5442 -2.4226 14 6 3.1377 11.6912 -3.3549 15 1 2.4676 11.5504 -4.1901 16 6 3.7245 12.9205 -3.1417 17 7 4.5401 13.0923 -2.1244 18 14 3.3600 14.3425 -4.2969 19 1 2.4181 13.8931 -5.3533 20 1 2.7495 15.4587 -3.5309 21 1 4.6233 14.8061 -4.9252 22 7 1.6651 2.3073 -0.9063 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2927 1.3238 1.7441 29 1 1.3010 4.4268 -2.4149 30 1 2.4927 6.6349 -3.4033 31 1 1.1176 7.1133 -2.3793 32 1 2.6524 8.4058 -0.9223 33 1 4.0274 7.9273 -1.9463 34 1 2.9663 9.0387 -3.8920 35 1 1.5909 9.5176 -2.8685 36 1 3.1246 10.8101 -1.4111 37 1 4.5003 10.3317 -2.4341 38 1 4.9533 13.9569 -1.9745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588350996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:36 Heat of formation + Delta-G solvation = -20.434942 kcal Electronic energy + Delta-G solvation = -18586.315875 eV Core-core repulsion = 15554.682316 eV Total energy + Delta-G solvation = -3031.633559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.70885 -39.68617 -35.58190 -35.00501 -33.21410 -32.67782 -30.16800 -29.18345 -26.19201 -24.92664 -23.60295 -22.30054 -21.37556 -20.10669 -19.69660 -18.23072 -16.98945 -16.75235 -16.29899 -16.18054 -15.22903 -14.86630 -14.53249 -14.37750 -14.20687 -13.86082 -13.42202 -12.83604 -12.72145 -12.41426 -12.12557 -11.83582 -11.72724 -11.53258 -11.23429 -11.05468 -10.96395 -10.64341 -10.52522 -10.49825 -10.09786 -9.88134 -9.68600 -9.31274 -9.31143 -9.03036 -8.40546 -8.34034 -5.98564 -4.01180 0.60496 1.02637 1.77070 2.10296 2.42045 2.79142 3.31189 3.38657 3.42318 4.21356 4.45869 4.52605 4.75721 4.97305 5.04400 5.09147 5.15413 5.24412 5.37050 5.40937 5.58090 5.61352 5.66325 5.79431 5.94774 6.00437 6.09085 6.15332 6.42388 6.68634 6.73052 6.91285 7.13201 7.59926 7.64135 7.70145 7.84512 8.02156 8.43750 9.06630 9.62819 11.12742 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.056925 B = 0.002381 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.756623 B =11758.643152 C =12157.757173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C 0.092 3.908 4 C -0.326 4.326 5 S 0.242 5.758 6 C 0.247 3.753 7 N -0.629 5.629 8 C 0.511 3.489 9 O -0.496 6.496 10 C -0.130 4.130 11 C -0.106 4.106 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.515 5.515 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.423 0.577 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -25.678 3.886 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.041 4.041 4 C -0.467 4.467 5 S 0.493 5.507 6 C -0.120 4.120 7 N -0.280 5.280 8 C 0.299 3.701 9 O -0.369 6.369 10 C -0.170 4.170 11 C -0.144 4.144 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.239 5.239 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.190 0.810 29 H 0.262 0.738 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.618 -24.602 4.608 25.653 hybrid contribution -0.808 -0.139 -1.044 1.327 sum -6.426 -24.741 3.564 25.809 Atomic orbital electron populations 1.21668 0.94403 1.01482 1.02610 1.20121 0.96595 0.89102 1.02809 1.19770 0.96698 0.96525 0.91076 1.27260 1.09706 1.01720 1.07976 1.85122 1.41606 1.04425 1.19562 1.23530 1.00111 0.90759 0.97629 1.43172 1.47618 1.07950 1.29221 1.21742 0.79049 0.82686 0.86640 1.90661 1.34518 1.81164 1.30566 1.21831 1.03953 0.92669 0.98554 1.21524 0.99914 0.92204 1.00722 1.21654 1.00442 0.95338 0.97370 1.19101 0.95312 0.90721 0.96638 1.21305 1.27199 0.95378 1.11989 0.92674 1.25047 0.95240 0.98864 0.95469 1.69976 1.30568 1.23895 1.28967 0.86552 0.78070 0.82500 0.80953 1.19774 1.21042 1.21048 1.66098 1.28721 0.99542 1.29519 0.91804 0.92443 0.92905 0.90397 0.90368 0.80997 0.73809 0.88062 0.88057 0.91435 0.91433 0.93280 0.93289 0.96531 0.96534 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.81 37.16 0.36 -0.72 16 2 C -0.05 -0.36 6.43 -27.88 -0.18 -0.54 16 3 C 0.09 0.99 6.08 -84.20 -0.51 0.48 16 4 C -0.33 -3.32 11.05 29.05 0.32 -3.00 16 5 S 0.24 2.94 20.22 -107.50 -2.17 0.77 16 6 C 0.25 3.07 8.19 -87.35 -0.72 2.35 16 7 N -0.63 -6.73 5.40 -13.07 -0.07 -6.80 16 8 C 0.51 6.36 7.79 -10.98 -0.09 6.27 16 9 O -0.50 -7.78 13.45 5.55 0.07 -7.71 16 10 C -0.13 -1.48 5.70 -27.88 -0.16 -1.64 16 11 C -0.11 -1.70 4.50 -26.74 -0.12 -1.82 16 12 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 13 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 N -0.52 -6.34 10.38 -11.28 -0.12 -6.45 16 23 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.46 8.03 -51.93 -0.42 0.05 16 28 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.42 3.29 8.82 -40.82 -0.36 2.93 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -33.04 336.35 -9.08 -42.12 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.81 Total: -3.18 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.77 Total: -14.04 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.55 Total: -39.64 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.71 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.17 Total: 0.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.04 -9.08 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588350996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.684 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds