Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 126.03730 * 2 1 4 4 N 1.31778 * 114.50181 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12461 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91704 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47040 * 89.97594 * 6 5 4 8 8 C 1.34785 * 119.99744 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00213 * 359.97438 * 8 7 6 10 10 C 1.50693 * 119.99900 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47094 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47253 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47253 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47363 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99886 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00253 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99994 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 90.00105 * 18 16 14 20 20 H 1.48506 * 109.47037 * 209.99935 * 18 16 14 21 21 H 1.48500 * 109.47410 * 330.00110 * 18 16 14 22 22 S 1.70982 * 110.16446 * 359.72487 * 5 4 3 23 23 H 1.09002 * 109.47152 * 90.00002 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00102 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00083 * 1 2 3 26 26 H 1.07996 * 122.75014 * 0.02562 * 3 2 1 27 27 H 1.09005 * 109.47178 * 209.97478 * 6 5 4 28 28 H 1.09001 * 109.46918 * 329.96982 * 6 5 4 29 29 H 0.96997 * 120.00590 * 0.02562 * 7 6 5 30 30 H 1.08996 * 109.47438 * 300.00047 * 10 8 7 31 31 H 1.09010 * 109.47288 * 59.99941 * 10 8 7 32 32 H 1.09005 * 109.47299 * 300.00214 * 11 10 8 33 33 H 1.08998 * 109.47113 * 60.00270 * 11 10 8 34 34 H 1.08996 * 109.47121 * 299.99994 * 12 11 10 35 35 H 1.09001 * 109.47585 * 59.99910 * 12 11 10 36 36 H 1.08996 * 109.47052 * 300.00036 * 13 12 11 37 37 H 1.08998 * 109.47113 * 59.99978 * 13 12 11 38 38 H 0.96997 * 120.00108 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9312 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 7 5.8130 -1.0859 1.3831 8 6 7.0634 -1.5240 1.6303 9 8 7.8078 -1.7850 0.7091 10 6 7.5366 -1.6896 3.0514 11 6 8.9803 -2.1961 3.0525 12 6 9.4605 -2.3648 4.4954 13 6 10.9045 -2.8707 4.4965 14 6 11.3777 -3.0363 5.9177 15 1 10.7147 -2.8043 6.7381 16 6 12.6570 -3.4839 6.1706 17 7 13.4642 -3.7669 5.1716 18 14 13.2438 -3.6884 7.9322 19 1 12.9367 -5.0642 8.3995 20 1 14.7097 -3.4598 7.9954 21 1 12.5513 -2.7041 8.8021 22 16 2.5436 -1.4247 0.0074 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.9025 2.0875 0.0004 27 1 5.4019 -1.8846 -0.5121 28 1 5.9910 -0.2050 -0.5120 29 1 5.2176 -0.8776 2.1200 30 1 7.4877 -0.7294 3.5649 31 1 6.8990 -2.4092 3.5652 32 1 9.0289 -3.1564 2.5392 33 1 9.6181 -1.4768 2.5388 34 1 9.4120 -1.4047 5.0091 35 1 8.8227 -3.0843 5.0089 36 1 10.9535 -3.8307 3.9827 37 1 11.5420 -2.1509 3.9832 38 1 14.3643 -4.0814 5.3495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588620686.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = -22.254807 kcal Electronic energy + Delta-G solvation = -18282.599264 eV Core-core repulsion = 15250.886790 eV Total energy + Delta-G solvation = -3031.712474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31826 -39.54158 -35.44979 -34.76243 -33.05348 -32.58351 -30.24210 -28.93483 -26.25728 -25.25729 -23.85248 -22.23680 -20.46211 -19.98727 -19.79598 -18.58637 -16.90640 -16.41125 -16.06521 -15.79726 -15.46157 -14.95301 -14.56011 -14.42695 -13.92506 -13.73240 -13.59786 -13.31144 -13.06485 -12.78834 -12.57820 -12.05824 -11.67162 -11.66616 -11.57675 -10.96304 -10.51618 -10.48601 -10.38547 -10.11425 -9.94998 -9.70744 -9.58668 -9.32835 -9.28629 -9.16032 -8.95138 -8.28185 -5.92944 -3.95353 0.12447 0.81215 1.24910 2.27214 2.68925 3.16228 3.35631 3.41591 3.44918 3.64455 4.38132 4.48938 4.51088 4.61138 4.88417 4.93153 5.05952 5.20171 5.31491 5.35012 5.37816 5.40022 5.42585 5.69205 5.87321 6.14251 6.16609 6.32954 6.57409 6.86888 7.04695 7.22174 7.24717 7.35134 7.76747 7.92982 8.08657 8.19666 8.50424 9.12368 9.68124 11.18354 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.047319 B = 0.002152 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.585227 B =13009.940211 C =13257.988251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.220 4.220 3 C 0.030 3.970 4 N -0.452 5.452 5 C 0.020 3.980 6 C 0.199 3.801 7 N -0.734 5.734 8 C 0.516 3.484 9 O -0.531 6.531 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 S 0.145 5.855 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.177 0.823 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.402 0.598 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.195 7.446 -11.327 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.341 4.341 3 C -0.122 4.122 4 N -0.167 5.167 5 C -0.258 4.258 6 C 0.072 3.928 7 N -0.389 5.389 8 C 0.304 3.696 9 O -0.407 6.407 10 C -0.177 4.177 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 S 0.399 5.601 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.194 0.806 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.236 0.764 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -28.168 6.512 -12.049 31.321 hybrid contribution -0.309 0.946 1.242 1.592 sum -28.476 7.458 -10.807 31.358 Atomic orbital electron populations 1.20274 0.86508 1.03692 1.03183 1.26171 1.01961 0.95310 1.10681 1.21760 0.86732 1.00287 1.03395 1.66280 1.17903 1.18618 1.13856 1.26938 1.00789 0.91678 1.06346 1.19673 0.85929 1.01696 0.85498 1.46091 1.15563 1.69980 1.07312 1.21145 0.80269 0.75477 0.92735 1.90723 1.54129 1.49103 1.46704 1.21799 1.00379 1.03698 0.91837 1.21463 0.91826 1.01641 0.99224 1.21651 1.00049 1.00090 0.93021 1.19101 0.89523 0.96373 0.96782 1.21285 0.97955 1.43918 0.92648 0.92766 1.25046 0.96961 0.95693 0.96934 1.69974 1.07300 1.45598 1.30573 0.86610 0.77848 0.78375 0.85230 1.20733 1.21268 1.19942 1.84152 0.98111 1.10660 1.67128 0.90286 0.89988 0.90871 0.80609 0.89242 0.88446 0.76423 0.88982 0.89014 0.91737 0.91720 0.93462 0.93470 0.96575 0.96554 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.42 36.01 0.38 0.10 16 2 C -0.22 -1.43 6.60 -35.92 -0.24 -1.67 16 3 C 0.03 0.23 11.25 -19.19 -0.22 0.02 16 4 N -0.45 -4.60 10.54 -11.86 -0.13 -4.72 16 5 C 0.02 0.18 6.76 -13.46 -0.09 0.09 16 6 C 0.20 1.99 6.25 -5.20 -0.03 1.96 16 7 N -0.73 -7.67 5.55 -61.47 -0.34 -8.01 16 8 C 0.52 7.14 7.83 -10.99 -0.09 7.05 16 9 O -0.53 -9.53 15.98 5.55 0.09 -9.44 16 10 C -0.14 -1.82 5.70 -27.89 -0.16 -1.98 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 15 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 S 0.15 1.03 23.18 -107.50 -2.49 -1.46 16 23 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.40 3.33 8.46 -40.82 -0.35 2.99 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -34.67 341.73 -9.06 -43.73 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.80 Total: -2.98 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.25 Total: -12.35 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.27 Total: -39.68 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.67 -9.06 -43.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588620686.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.477 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds