Wall clock time and date at job start Tue Mar 31 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47099 * 2 1 4 4 C 1.33443 * 125.97175 * 90.00051 * 3 2 1 5 5 N 1.31983 * 114.57259 * 179.97438 * 4 3 2 6 6 C 1.29628 * 116.91527 * 359.97438 * 5 4 3 7 7 N 1.39004 * 124.94082 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00271 * 0.02747 * 7 6 5 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27567 * 8 7 6 11 11 C 1.52996 * 109.47159 * 179.72352 * 10 8 7 12 12 C 1.52994 * 109.47118 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46834 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46874 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00298 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00174 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47201 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47632 * 119.99981 * 18 16 14 21 21 H 1.48511 * 109.47039 * 239.99735 * 18 16 14 22 22 S 1.70970 * 110.11215 * 0.26541 * 6 5 4 23 23 H 1.09004 * 109.47271 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47212 * 300.00142 * 1 2 3 25 25 H 1.09005 * 109.46944 * 60.00147 * 1 2 3 26 26 H 1.08998 * 109.46946 * 239.99456 * 2 1 3 27 27 H 1.08997 * 109.47133 * 120.00049 * 2 1 3 28 28 H 1.07999 * 122.71119 * 359.97438 * 4 3 2 29 29 H 0.97000 * 119.99412 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 31 31 H 1.09000 * 109.47154 * 59.71645 * 10 8 7 32 32 H 1.09004 * 109.47066 * 299.99797 * 11 10 8 33 33 H 1.09000 * 109.47234 * 59.99288 * 11 10 8 34 34 H 1.09004 * 109.47131 * 299.99935 * 12 11 10 35 35 H 1.09003 * 109.47184 * 60.00331 * 12 11 10 36 36 H 1.08990 * 109.47421 * 299.99996 * 13 12 11 37 37 H 1.09002 * 109.47073 * 60.00711 * 13 12 11 38 38 H 0.96995 * 120.00587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2936 2.1598 1.0800 5 7 2.7254 3.3794 0.8191 6 6 2.8419 3.7060 -0.4299 7 7 3.2799 4.9415 -0.8922 8 6 3.6219 5.9065 -0.0156 9 8 3.5470 5.6969 1.1766 10 6 4.0909 7.2481 -0.5169 11 6 4.4065 8.1555 0.6738 12 6 4.8833 9.5173 0.1649 13 6 5.1983 10.4249 1.3557 14 6 5.6685 11.7661 0.8545 15 1 5.7356 11.9526 -0.2072 16 6 6.0131 12.7551 1.7512 17 7 5.9310 12.5282 3.0440 18 14 6.5953 14.4177 1.1299 19 1 6.5980 14.4180 -0.3551 20 1 5.6811 15.4787 1.6239 21 1 7.9703 14.6782 1.6270 22 16 2.3719 2.3982 -1.4259 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1624 1.7897 2.0861 29 1 3.3395 5.1092 -1.8458 30 1 4.9884 7.1166 -1.1214 31 1 3.3080 7.7034 -1.1233 32 1 3.5091 8.2870 1.2783 33 1 5.1895 7.7001 1.2802 34 1 5.7809 9.3854 -0.4394 35 1 4.1006 9.9729 -0.4416 36 1 4.3006 10.5567 1.9596 37 1 5.9809 9.9696 1.9626 38 1 6.1738 13.2238 3.6749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588621239.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:27 Heat of formation + Delta-G solvation = -14.335417 kcal Electronic energy + Delta-G solvation = -18506.399372 eV Core-core repulsion = 15475.030308 eV Total energy + Delta-G solvation = -3031.369063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62344 -39.12730 -35.57500 -34.84989 -34.01885 -32.62547 -30.01036 -28.58436 -26.28356 -24.96347 -23.48283 -22.47308 -21.17060 -20.03008 -19.60552 -18.57969 -16.90059 -16.49719 -16.13183 -16.06736 -15.14613 -14.88542 -14.51312 -14.40119 -14.08348 -13.94841 -13.72354 -12.88736 -12.65160 -12.25741 -12.03960 -12.00572 -11.74767 -11.61683 -11.23221 -11.00886 -10.85771 -10.56956 -10.49853 -10.44119 -10.30050 -9.62560 -9.47824 -9.45261 -9.20565 -8.97598 -8.38523 -8.30573 -5.94981 -3.97580 0.50900 0.72196 1.38158 2.43368 2.71979 2.94557 3.33363 3.40551 3.44351 4.21584 4.46469 4.49538 4.63224 4.83223 4.88481 5.15611 5.21621 5.27777 5.30862 5.40396 5.45359 5.63957 5.67572 5.76567 5.79467 6.08653 6.09485 6.25192 6.51224 6.80978 6.81459 7.00118 7.19250 7.65898 7.74518 7.89840 8.05928 8.07423 8.47766 9.10376 9.66113 11.16359 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.063266 B = 0.002271 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.471989 B =12325.661320 C =12640.004307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.243 4.243 4 C 0.070 3.930 5 N -0.476 5.476 6 C 0.277 3.723 7 N -0.642 5.642 8 C 0.503 3.497 9 O -0.463 6.463 10 C -0.133 4.133 11 C -0.105 4.105 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 S 0.106 5.894 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.176 0.824 29 H 0.421 0.579 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 -26.122 -12.121 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 C -0.365 4.365 4 C -0.081 4.081 5 N -0.197 5.197 6 C -0.092 4.092 7 N -0.294 5.294 8 C 0.288 3.712 9 O -0.330 6.330 10 C -0.173 4.173 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 S 0.357 5.643 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.193 0.807 29 H 0.258 0.742 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.529 -25.800 -11.726 29.898 hybrid contribution 0.288 0.799 0.085 0.854 sum -9.241 -25.001 -11.640 29.085 Atomic orbital electron populations 1.21820 0.94374 1.01975 1.02551 1.19914 0.95990 0.88705 1.03314 1.25667 1.14467 1.02711 0.93680 1.21604 0.98815 0.87629 1.00091 1.66583 1.19526 1.17569 1.16009 1.23771 1.00946 0.92451 0.91988 1.43507 1.65327 1.09226 1.11363 1.21592 0.77049 0.85810 0.86711 1.90834 1.47029 1.79793 1.15315 1.21840 1.02835 0.90731 1.01897 1.21497 1.02275 0.95288 0.95237 1.21648 0.99334 0.93338 1.00415 1.19105 0.96889 0.93304 0.92521 1.21314 1.43886 0.97803 0.92809 0.92680 1.25053 0.95893 0.98803 0.94910 1.69982 1.48840 1.33653 1.00935 0.86552 0.78360 0.84231 0.78925 1.19784 1.21059 1.21062 1.83827 1.64182 1.05678 1.10658 0.91984 0.92192 0.92554 0.90801 0.89695 0.80665 0.74151 0.88575 0.88573 0.91586 0.91583 0.93362 0.93371 0.96541 0.96543 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.04 -0.23 6.47 -27.89 -0.18 -0.41 16 3 C -0.24 -2.16 5.84 -35.99 -0.21 -2.37 16 4 C 0.07 0.79 11.24 -19.16 -0.22 0.57 16 5 N -0.48 -7.05 8.65 -15.12 -0.13 -7.18 16 6 C 0.28 3.40 8.02 -87.34 -0.70 2.70 16 7 N -0.64 -6.99 5.40 -13.07 -0.07 -7.06 16 8 C 0.50 7.18 7.79 -10.98 -0.09 7.09 16 9 O -0.46 -8.88 14.62 5.55 0.08 -8.79 16 10 C -0.13 -1.67 5.70 -27.88 -0.16 -1.83 16 11 C -0.10 -1.85 4.50 -26.74 -0.12 -1.97 16 12 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 13 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 18 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 S 0.11 0.91 23.22 -107.50 -2.50 -1.59 16 23 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.42 2.74 8.82 -40.82 -0.36 2.38 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -36.16 338.86 -9.60 -45.76 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.82 Total: -3.83 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.99 Total: -12.44 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.53 Total: -41.13 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.16 -9.60 -45.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588621239.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.420 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds