Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46908 * 2 1 4 4 C 1.50703 * 109.46988 * 119.99671 * 2 1 3 5 5 C 1.33331 * 125.95275 * 300.05070 * 4 2 1 6 6 N 1.32115 * 114.58076 * 179.97438 * 5 4 2 7 7 C 1.29694 * 116.86485 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94873 * 180.02562 * 7 6 5 9 9 C 1.47844 * 111.00150 * 120.81312 * 8 7 6 10 10 C 1.54898 * 104.80026 * 213.63449 * 9 8 7 11 11 C 1.55141 * 101.65267 * 37.07374 * 10 9 8 12 12 O 1.42905 * 110.85705 * 82.79453 * 11 10 9 13 13 C 1.50695 * 110.70851 * 205.96298 * 11 10 9 14 14 H 1.07998 * 119.99973 * 355.05023 * 13 11 10 15 15 C 1.37881 * 120.00136 * 175.05214 * 13 11 10 16 16 N 1.31514 * 119.99890 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99808 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46994 * 60.00358 * 17 15 13 19 19 H 1.48497 * 109.46735 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47584 * 300.00007 * 17 15 13 21 21 C 1.47449 * 110.99950 * 359.97276 * 8 7 6 22 22 S 1.70958 * 110.10068 * 359.97438 * 7 6 5 23 23 H 1.09005 * 109.47398 * 300.00223 * 1 2 3 24 24 H 1.08993 * 109.47481 * 60.00095 * 1 2 3 25 25 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47450 * 239.99662 * 2 1 3 27 27 H 1.09003 * 109.46919 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47110 * 299.99338 * 3 2 1 29 29 H 1.08997 * 109.47576 * 60.00265 * 3 2 1 30 30 H 1.08003 * 122.70881 * 359.97438 * 5 4 2 31 31 H 1.08997 * 110.37156 * 332.47241 * 9 8 7 32 32 H 1.09011 * 110.36880 * 94.80594 * 9 8 7 33 33 H 1.08995 * 110.99393 * 278.98351 * 10 9 8 34 34 H 1.09000 * 111.02484 * 155.17693 * 10 9 8 35 35 H 0.96699 * 114.00242 * 184.86227 * 12 11 10 36 36 H 0.97002 * 119.99626 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.88607 * 242.65985 * 21 8 7 38 38 H 1.09001 * 109.89081 * 3.69200 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7836 -0.3603 2.4928 6 7 2.3379 -1.1447 3.4000 7 6 3.0435 -2.1406 2.9614 8 7 3.6963 -3.0648 3.7620 9 6 3.2148 -4.4357 3.4893 10 6 3.2856 -5.1594 4.8570 11 6 2.8655 -4.0282 5.8321 12 8 1.4424 -3.9144 5.8965 13 6 3.4418 -4.2660 7.2040 14 1 3.9869 -5.1751 7.4106 15 6 3.2731 -3.3229 8.1956 16 7 2.6097 -2.2156 7.9440 17 14 3.9869 -3.6181 9.8965 18 1 5.4604 -3.7722 9.7950 19 1 3.6699 -2.4625 10.7736 20 1 3.3984 -4.8537 10.4728 21 6 3.4850 -2.7686 5.1909 22 16 3.0500 -2.1481 1.2518 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.1780 0.4954 2.7527 31 1 2.1877 -4.4118 3.1252 32 1 3.8636 -4.9287 2.7651 33 1 4.2997 -5.4992 5.0670 34 1 2.5815 -5.9905 4.8966 35 1 1.1310 -3.1739 6.4347 36 1 2.4907 -1.5523 8.6417 37 1 4.4386 -2.5408 5.6672 38 1 2.8058 -1.9228 5.2979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591975602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = -4.536275 kcal Electronic energy + Delta-G solvation = -20423.399891 eV Core-core repulsion = 17392.455750 eV Total energy + Delta-G solvation = -3030.944141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83209 -38.16146 -35.70244 -34.38511 -32.15795 -30.52977 -27.95758 -27.56506 -27.23186 -25.24761 -24.03114 -21.94541 -20.85973 -19.74435 -18.29053 -17.86215 -17.03381 -15.85330 -15.12846 -14.89769 -14.84000 -14.28853 -14.06860 -13.85850 -13.63239 -13.09206 -12.88156 -12.65840 -12.32362 -11.99381 -11.70186 -11.57575 -11.42967 -11.28300 -11.16076 -10.95258 -10.82612 -10.63853 -10.62565 -10.46636 -10.09929 -9.51796 -9.10222 -8.93447 -8.82619 -8.60912 -8.25130 -7.45698 -6.20459 -4.29727 1.16700 1.56507 2.10937 3.25288 3.26200 3.30558 3.32912 4.29591 4.32398 4.74756 4.86596 5.04349 5.07825 5.10988 5.41591 5.48515 5.52134 5.67323 5.70241 5.73424 5.84627 5.87236 5.92782 6.05618 6.14865 6.19624 6.24660 6.39194 6.58888 6.76259 6.93216 7.15754 7.34367 7.45718 7.70305 7.81620 8.10213 8.31466 8.72622 9.36770 9.45311 10.86286 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.004643 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.085221 B = 6029.246775 C = 6471.619768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.141 4.141 4 C -0.256 4.256 5 C 0.071 3.929 6 N -0.510 5.510 7 C 0.251 3.749 8 N -0.453 5.453 9 C 0.049 3.951 10 C -0.113 4.113 11 C 0.241 3.759 12 O -0.588 6.588 13 C -0.537 4.537 14 H 0.064 0.936 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.901 3.099 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.035 3.965 22 S 0.095 5.905 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.166 0.834 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.382 0.618 36 H 0.269 0.731 37 H 0.080 0.920 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 3.654 -14.663 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 C -0.199 4.199 4 C -0.378 4.378 5 C -0.081 4.081 6 N -0.229 5.229 7 C -0.119 4.119 8 N -0.174 5.174 9 C -0.078 4.078 10 C -0.151 4.151 11 C 0.200 3.800 12 O -0.396 6.396 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.132 4.132 16 N -0.530 5.530 17 Si 0.728 3.272 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.092 4.092 22 S 0.349 5.651 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.183 0.817 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.232 0.768 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.562 2.695 -15.208 15.455 hybrid contribution -0.679 1.213 1.831 2.299 sum -1.241 3.908 -13.377 13.991 Atomic orbital electron populations 1.21858 0.94016 1.02184 1.01897 1.19397 0.95561 0.94978 0.92898 1.21861 1.01340 0.94842 1.01899 1.25459 1.09970 1.02910 0.99488 1.21363 0.99978 0.99694 0.87089 1.66898 1.11976 1.07543 1.36495 1.25274 0.94352 0.97407 0.94830 1.60821 1.47112 1.01027 1.08457 1.23191 0.98495 0.86394 0.99721 1.22688 1.01584 0.98422 0.92371 1.19668 0.79330 0.88356 0.92610 1.86088 1.23017 1.55816 1.74720 1.21467 1.35717 1.05059 0.95345 0.91819 1.25052 0.94348 0.94570 0.99221 1.69722 1.40632 1.08396 1.34241 0.86510 0.79573 0.77786 0.83296 1.20066 1.21152 1.20092 1.23902 1.02981 1.02590 0.79746 1.83580 1.49463 1.26760 1.05293 0.92255 0.92335 0.92458 0.90706 0.92514 0.92329 0.92268 0.81743 0.92784 0.90607 0.90130 0.90911 0.76778 0.92118 0.90192 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.06 37.16 0.34 -1.02 16 2 C -0.01 -0.08 3.32 -91.77 -0.30 -0.38 16 3 C -0.14 -1.34 9.06 37.16 0.34 -1.00 16 4 C -0.26 -3.69 5.34 -36.02 -0.19 -3.88 16 5 C 0.07 1.18 10.59 -19.14 -0.20 0.97 16 6 N -0.51 -10.53 8.69 -15.21 -0.13 -10.66 16 7 C 0.25 5.01 6.49 -87.68 -0.57 4.44 16 8 N -0.45 -9.57 5.25 -172.17 -0.90 -10.47 16 9 C 0.05 0.93 6.38 -2.30 -0.01 0.91 16 10 C -0.11 -2.36 6.22 -24.60 -0.15 -2.51 16 11 C 0.24 6.01 0.85 -89.95 -0.08 5.93 16 12 O -0.59 -15.51 13.08 -35.23 -0.46 -15.97 16 13 C -0.54 -14.36 8.12 -34.44 -0.28 -14.64 16 14 H 0.06 1.67 7.78 -52.49 -0.41 1.26 16 15 C 0.07 1.89 5.27 -17.82 -0.09 1.80 16 16 N -0.89 -24.14 10.96 55.43 0.61 -23.54 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 C 0.04 0.86 5.18 -2.83 -0.01 0.84 16 22 S 0.10 1.48 22.88 -107.50 -2.46 -0.98 16 23 H 0.06 0.58 7.99 -51.93 -0.41 0.16 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.57 7.99 -51.93 -0.42 0.15 16 30 H 0.17 2.37 8.06 -52.48 -0.42 1.95 16 31 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 32 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 33 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.38 10.38 7.44 45.56 0.34 10.72 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.08 2.09 7.81 -51.93 -0.41 1.68 16 38 H 0.10 2.66 6.02 -51.93 -0.31 2.34 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -28.54 321.82 -9.70 -38.24 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.96 Total: 11.39 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.23 Total: -8.54 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.43 Total: -44.68 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.46 Total: -15.97 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.46 Total: -0.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.54 -9.70 -38.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.706 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds