Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46908 * 2 1 4 4 C 1.50703 * 109.46988 * 119.99671 * 2 1 3 5 5 C 1.33331 * 125.95275 * 300.05070 * 4 2 1 6 6 N 1.32115 * 114.58076 * 179.97438 * 5 4 2 7 7 C 1.29694 * 116.86485 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94873 * 180.02562 * 7 6 5 9 9 C 1.47844 * 111.00150 * 120.81312 * 8 7 6 10 10 C 1.54898 * 104.80026 * 213.63449 * 9 8 7 11 11 C 1.55141 * 101.65267 * 37.07374 * 10 9 8 12 12 O 1.42905 * 110.85705 * 82.79453 * 11 10 9 13 13 C 1.50695 * 110.70851 * 205.96298 * 11 10 9 14 14 H 1.07998 * 119.99973 * 355.05023 * 13 11 10 15 15 C 1.37881 * 120.00136 * 175.05214 * 13 11 10 16 16 N 1.31514 * 119.99890 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99808 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46994 * 60.00358 * 17 15 13 19 19 H 1.48497 * 109.46735 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47584 * 300.00007 * 17 15 13 21 21 C 1.47449 * 110.99950 * 359.97276 * 8 7 6 22 22 S 1.70958 * 110.10068 * 359.97438 * 7 6 5 23 23 H 1.09005 * 109.47398 * 300.00223 * 1 2 3 24 24 H 1.08993 * 109.47481 * 60.00095 * 1 2 3 25 25 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47450 * 239.99662 * 2 1 3 27 27 H 1.09003 * 109.46919 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47110 * 299.99338 * 3 2 1 29 29 H 1.08997 * 109.47576 * 60.00265 * 3 2 1 30 30 H 1.08003 * 122.70881 * 359.97438 * 5 4 2 31 31 H 1.08997 * 110.37156 * 332.47241 * 9 8 7 32 32 H 1.09011 * 110.36880 * 94.80594 * 9 8 7 33 33 H 1.08995 * 110.99393 * 278.98351 * 10 9 8 34 34 H 1.09000 * 111.02484 * 155.17693 * 10 9 8 35 35 H 0.96699 * 114.00242 * 184.86227 * 12 11 10 36 36 H 0.97002 * 119.99626 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.88607 * 242.65985 * 21 8 7 38 38 H 1.09001 * 109.89081 * 3.69200 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7836 -0.3603 2.4928 6 7 2.3379 -1.1447 3.4000 7 6 3.0435 -2.1406 2.9614 8 7 3.6963 -3.0648 3.7620 9 6 3.2148 -4.4357 3.4893 10 6 3.2856 -5.1594 4.8570 11 6 2.8655 -4.0282 5.8321 12 8 1.4424 -3.9144 5.8965 13 6 3.4418 -4.2660 7.2040 14 1 3.9869 -5.1751 7.4106 15 6 3.2731 -3.3229 8.1956 16 7 2.6097 -2.2156 7.9440 17 14 3.9869 -3.6181 9.8965 18 1 5.4604 -3.7722 9.7950 19 1 3.6699 -2.4625 10.7736 20 1 3.3984 -4.8537 10.4728 21 6 3.4850 -2.7686 5.1909 22 16 3.0500 -2.1481 1.2518 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.1780 0.4954 2.7527 31 1 2.1877 -4.4118 3.1252 32 1 3.8636 -4.9287 2.7651 33 1 4.2997 -5.4992 5.0670 34 1 2.5815 -5.9905 4.8966 35 1 1.1310 -3.1739 6.4347 36 1 2.4907 -1.5523 8.6417 37 1 4.4386 -2.5408 5.6672 38 1 2.8058 -1.9228 5.2979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591975602.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = -23.513752 kcal Electronic energy + Delta-G solvation = -20424.222816 eV Core-core repulsion = 17392.455750 eV Total energy + Delta-G solvation = -3031.767066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31896 -39.71516 -37.00817 -35.95075 -34.21803 -32.14564 -29.73598 -28.93559 -27.97488 -27.07706 -25.49243 -23.28266 -22.29231 -21.47777 -19.70703 -19.28423 -18.94712 -17.35552 -17.00376 -16.45362 -16.14832 -15.82904 -15.34940 -15.08748 -14.91385 -14.79095 -14.40345 -14.11311 -13.59596 -13.43825 -13.21103 -12.97653 -12.81599 -12.66007 -12.59430 -12.42391 -12.31578 -12.21389 -12.08683 -12.01325 -11.61296 -11.26210 -10.79055 -10.60217 -10.37913 -10.19204 -10.10899 -8.94620 -8.22023 -6.39413 -0.16930 0.23637 0.80716 1.41992 1.42408 1.50615 1.89999 2.38102 2.86189 3.02054 3.55987 3.78453 3.89051 4.01371 4.05451 4.21045 4.26912 4.36315 4.50740 4.57917 4.64835 4.79275 4.83743 4.95563 5.00549 5.03948 5.08205 5.13758 5.19338 5.35026 5.40047 5.42799 5.55497 5.61132 5.77806 6.00788 6.09652 6.66445 6.95751 7.28057 7.35842 8.82693 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029340 B = 0.004643 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.085221 B = 6029.246775 C = 6471.619768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.139 4.139 4 C -0.229 4.229 5 C 0.039 3.961 6 N -0.547 5.547 7 C 0.201 3.799 8 N -0.458 5.458 9 C 0.055 3.945 10 C -0.109 4.109 11 C 0.223 3.777 12 O -0.594 6.594 13 C -0.561 4.561 14 H 0.063 0.937 15 C 0.028 3.972 16 N -0.912 5.912 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.055 3.945 22 S 0.159 5.841 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.179 0.821 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.373 0.627 36 H 0.268 0.732 37 H 0.050 0.950 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 3.694 -16.918 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 C -0.197 4.197 4 C -0.352 4.352 5 C -0.111 4.111 6 N -0.267 5.267 7 C -0.167 4.167 8 N -0.179 5.179 9 C -0.072 4.072 10 C -0.147 4.147 11 C 0.183 3.817 12 O -0.402 6.402 13 C -0.599 4.599 14 H 0.081 0.919 15 C -0.173 4.173 16 N -0.551 5.551 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.074 4.074 22 S 0.413 5.587 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.196 0.804 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.222 0.778 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.456 2.726 -17.488 17.706 hybrid contribution -0.779 1.280 2.376 2.809 sum -1.235 4.006 -15.113 15.684 Atomic orbital electron populations 1.21856 0.92814 1.02069 1.03031 1.19651 0.96457 0.95545 0.91375 1.21857 1.00957 0.93876 1.03044 1.26117 1.07185 1.01628 1.00238 1.21575 1.01423 1.00564 0.87537 1.66814 1.12501 1.08254 1.39164 1.25389 0.96355 0.97825 0.97141 1.60852 1.48280 1.02089 1.06666 1.23247 0.99037 0.85631 0.99250 1.22678 1.02058 0.97497 0.92438 1.19935 0.78358 0.90285 0.93124 1.86077 1.24286 1.55357 1.74487 1.21797 1.36163 1.05212 0.96716 0.91909 1.25785 0.94609 0.94282 1.02617 1.69843 1.41305 1.08910 1.35037 0.85548 0.78979 0.77651 0.79073 1.19515 1.20884 1.19678 1.23339 1.00349 1.01398 0.82275 1.83233 1.48332 1.26363 1.00761 0.92719 0.89704 0.93217 0.89093 0.93131 0.89732 0.92678 0.80378 0.93455 0.86896 0.89189 0.90269 0.77817 0.92248 0.93203 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.06 71.98 0.65 -1.61 16 2 C -0.01 -0.16 3.32 -11.54 -0.04 -0.20 16 3 C -0.14 -2.20 9.06 71.98 0.65 -1.55 16 4 C -0.23 -6.18 5.34 24.58 0.13 -6.05 16 5 C 0.04 1.30 10.59 83.54 0.88 2.18 16 6 N -0.55 -23.13 8.69 -202.03 -1.75 -24.89 16 7 C 0.20 8.04 6.49 179.32 1.16 9.21 16 8 N -0.46 -19.52 5.25 -698.61 -3.67 -23.19 16 9 C 0.05 2.03 6.38 86.77 0.55 2.59 16 10 C -0.11 -4.54 6.22 31.98 0.20 -4.34 16 11 C 0.22 11.44 0.85 -10.36 -0.01 11.43 16 12 O -0.59 -32.45 13.08 -148.98 -1.95 -34.40 16 13 C -0.56 -30.64 8.12 25.60 0.21 -30.44 16 14 H 0.06 3.34 7.78 -2.91 -0.02 3.32 16 15 C 0.03 1.52 5.27 84.66 0.45 1.96 16 16 N -0.91 -51.10 10.96 21.45 0.24 -50.87 16 17 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.06 2.81 5.18 86.65 0.45 3.26 16 22 S 0.16 4.64 22.88 -56.49 -1.29 3.35 16 23 H 0.05 0.95 7.99 -2.38 -0.02 0.93 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.93 7.99 -2.39 -0.02 0.91 16 30 H 0.18 5.13 8.06 -2.91 -0.02 5.11 16 31 H 0.05 1.80 7.79 -2.39 -0.02 1.79 16 32 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 33 H 0.09 3.53 8.04 -2.39 -0.02 3.52 16 34 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.37 21.31 7.44 -74.06 -0.55 20.76 16 36 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.05 2.75 7.81 -2.39 -0.02 2.73 16 38 H 0.07 4.11 6.02 -2.39 -0.01 4.10 16 Total: -1.00 -63.67 321.82 -0.60 -64.27 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.51 Total: 34.24 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.29 Total: -13.56 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -5.19 Total: -98.95 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.95 Total: -34.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.29 Total: 3.35 kcal Total: -63.67 -0.60 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591975602.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.758 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds