Wall clock time and date at job start Tue Mar 31 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31783 * 122.74661 * 2 1 4 4 C 1.29026 * 117.12306 * 180.02562 * 3 2 1 5 5 C 1.50701 * 124.91672 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47223 * 89.99410 * 5 4 3 7 7 C 1.47443 * 111.00227 * 69.87126 * 6 5 4 8 8 C 1.54312 * 107.23612 * 236.74273 * 7 6 5 9 9 C 1.55142 * 103.17714 * 337.62814 * 8 7 6 10 10 O 1.42900 * 110.99267 * 277.64922 * 9 8 7 11 11 C 1.50700 * 110.99048 * 153.83199 * 9 8 7 12 12 H 1.08004 * 119.99851 * 241.45911 * 11 9 8 13 13 C 1.37875 * 120.00057 * 61.45406 * 11 9 8 14 14 N 1.31517 * 120.00100 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00140 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46947 * 60.00160 * 15 13 11 17 17 H 1.48494 * 109.47096 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47157 * 300.00184 * 15 13 11 19 19 C 1.47844 * 110.99982 * 309.02970 * 6 5 4 20 20 S 1.70982 * 110.16863 * 0.22032 * 4 3 2 21 21 C 1.33638 * 122.75229 * 180.02562 * 2 1 3 22 22 C 1.50703 * 126.03497 * 359.97438 * 21 2 1 23 23 H 1.09001 * 109.47347 * 89.98104 * 1 2 3 24 24 H 1.09005 * 109.46733 * 209.97492 * 1 2 3 25 25 H 1.08998 * 109.47450 * 329.97517 * 1 2 3 26 26 H 1.08999 * 109.47013 * 329.99385 * 5 4 3 27 27 H 1.08994 * 109.47127 * 209.99211 * 5 4 3 28 28 H 1.08997 * 109.88254 * 117.33308 * 7 6 5 29 29 H 1.09003 * 109.88840 * 356.15438 * 7 6 5 30 30 H 1.09002 * 110.70596 * 96.10119 * 8 7 6 31 31 H 1.09005 * 110.70742 * 219.16269 * 8 7 6 32 32 H 0.96696 * 113.99925 * 298.54409 * 10 9 8 33 33 H 0.96993 * 120.00152 * 179.97438 * 14 13 11 34 34 H 1.08999 * 110.37744 * 265.19940 * 19 6 5 35 35 H 1.09008 * 110.37208 * 27.53592 * 19 6 5 36 36 H 1.08994 * 109.47635 * 89.99882 * 22 21 2 37 37 H 1.08999 * 109.46835 * 209.99866 * 22 21 2 38 38 H 1.09003 * 109.47270 * 329.99031 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 -0.0005 5 6 4.4835 2.1272 -0.0012 6 7 4.8022 2.4997 1.3836 7 6 5.6088 1.4543 2.0397 8 6 4.8458 1.0164 3.3075 9 6 3.9311 2.2330 3.6077 10 8 4.6445 3.2466 4.3189 11 6 2.7003 1.8087 4.3668 12 1 1.7216 1.9581 3.9352 13 6 2.8237 1.2297 5.6119 14 7 4.0155 1.0482 6.1376 15 14 1.2980 0.7045 6.5531 16 1 0.5506 -0.3049 5.7606 17 1 1.6986 0.1143 7.8555 18 1 0.4319 1.8869 6.7915 19 6 3.5699 2.7083 2.1732 20 16 3.9334 -0.6731 -0.0072 21 6 2.2300 -1.1239 -0.0005 22 6 1.6848 -2.5288 -0.0006 23 1 -0.3634 0.0003 -1.0277 24 1 -0.3633 -0.8903 0.5135 25 1 -0.3634 0.8897 0.5142 26 1 4.0431 2.9816 -0.5151 27 1 5.3958 1.8247 -0.5152 28 1 6.5841 1.8563 2.3141 29 1 5.7313 0.6044 1.3683 30 1 4.2497 0.1254 3.1100 31 1 5.5369 0.8411 4.1320 32 1 4.9780 2.9618 5.1806 33 1 4.1023 0.6413 7.0137 34 1 3.2981 3.7639 2.1808 35 1 2.7542 2.1085 1.7692 36 1 1.5529 -2.8674 -1.0282 37 1 2.3832 -3.1896 0.5128 38 1 0.7239 -2.5457 0.5138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:05 Heat of formation + Delta-G solvation = -1.132678 kcal Electronic energy + Delta-G solvation = -21086.529729 eV Core-core repulsion = 18055.733179 eV Total energy + Delta-G solvation = -3030.796550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93686 -38.23050 -35.01434 -32.97982 -32.10218 -30.38287 -29.39505 -28.09684 -26.71533 -24.98516 -24.14383 -22.28019 -20.11716 -19.50449 -18.49273 -17.62566 -17.06968 -15.42908 -15.36831 -14.85265 -14.63470 -14.33965 -13.82085 -13.59072 -13.26834 -12.99954 -12.95188 -12.66393 -12.45771 -12.11151 -11.97788 -11.84445 -11.44938 -11.25525 -11.02828 -10.91901 -10.89373 -10.72586 -10.43896 -10.28332 -9.86946 -9.41023 -9.15440 -8.85687 -8.57512 -8.36726 -8.05989 -7.72029 -6.18301 -4.25292 0.95103 1.60261 1.99500 3.04377 3.24068 3.28579 3.32178 4.28218 4.32102 4.70975 5.03096 5.08977 5.17018 5.23432 5.41066 5.44253 5.52985 5.67152 5.69492 5.84117 5.88128 5.96798 5.99330 6.08512 6.13420 6.24032 6.47317 6.56455 6.70884 6.93678 7.09225 7.43091 7.51573 7.56708 7.65575 7.84831 8.05276 8.21169 8.76615 9.42551 9.54934 10.88838 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015274 B = 0.007794 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.800142 B = 3591.507082 C = 4565.122852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.064 3.936 3 N -0.457 5.457 4 C 0.031 3.969 5 C 0.122 3.878 6 N -0.507 5.507 7 C 0.035 3.965 8 C -0.141 4.141 9 C 0.253 3.747 10 O -0.580 6.580 11 C -0.530 4.530 12 H 0.058 0.942 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.044 3.956 20 S 0.109 5.891 21 C -0.235 4.235 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.376 0.624 33 H 0.266 0.734 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -6.184 -12.253 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 N -0.172 5.172 4 C -0.249 4.249 5 C -0.011 4.011 6 N -0.230 5.230 7 C -0.092 4.092 8 C -0.180 4.180 9 C 0.213 3.787 10 O -0.387 6.387 11 C -0.569 4.569 12 H 0.076 0.924 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.083 4.083 20 S 0.364 5.636 21 C -0.356 4.356 22 C -0.130 4.130 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.225 0.775 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.211 -5.418 -12.662 13.774 hybrid contribution -1.962 -1.509 1.207 2.754 sum -2.173 -6.927 -11.455 13.562 Atomic orbital electron populations 1.20330 0.87566 1.03422 1.02216 1.20141 0.97986 0.86414 1.02260 1.66174 1.04489 1.31229 1.15356 1.28120 0.94999 0.98467 1.03330 1.21360 0.93849 0.91915 0.93932 1.64050 1.18588 1.40081 1.00235 1.22999 0.98019 0.91773 0.96436 1.23225 0.99259 1.00214 0.95302 1.19613 0.88833 0.83269 0.87002 1.86149 1.75573 1.41480 1.35525 1.21459 0.93039 1.39917 1.02458 0.92365 1.24970 0.96264 0.94578 0.97188 1.69725 1.21904 1.44300 1.17601 0.86579 0.83123 0.78961 0.78916 1.20265 1.21123 1.19999 1.23426 0.90156 1.01362 0.93321 1.83794 1.07253 1.03977 1.68578 1.25603 0.95350 1.00746 1.13854 1.20186 1.01159 0.89383 1.02221 0.91108 0.90960 0.90518 0.88202 0.89395 0.91068 0.94493 0.92809 0.90420 0.77501 0.92398 0.91229 0.90839 0.91030 0.91349 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.06 36.01 0.36 -0.64 16 2 C 0.06 1.05 6.74 -84.22 -0.57 0.48 16 3 N -0.46 -8.39 8.92 -8.05 -0.07 -8.46 16 4 C 0.03 0.53 5.15 -13.46 -0.07 0.46 16 5 C 0.12 2.00 5.86 -4.98 -0.03 1.97 16 6 N -0.51 -10.12 5.41 -232.38 -1.26 -11.38 16 7 C 0.04 0.70 6.45 -2.84 -0.02 0.68 16 8 C -0.14 -3.32 5.36 -24.91 -0.13 -3.45 16 9 C 0.25 6.50 0.88 -89.38 -0.08 6.42 16 10 O -0.58 -15.57 13.16 -35.23 -0.46 -16.04 16 11 C -0.53 -14.71 8.28 -34.44 -0.29 -15.00 16 12 H 0.06 1.64 7.79 -52.48 -0.41 1.23 16 13 C 0.07 1.95 5.29 -17.82 -0.09 1.86 16 14 N -0.90 -24.28 10.75 55.43 0.60 -23.69 16 15 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.04 1.02 5.68 -2.04 -0.01 1.01 16 20 S 0.11 1.67 21.65 -107.50 -2.33 -0.66 16 21 C -0.23 -3.54 6.59 -35.92 -0.24 -3.77 16 22 C -0.07 -0.79 10.10 36.01 0.36 -0.43 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.82 6.72 -51.93 -0.35 0.48 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.09 1.21 8.04 -51.93 -0.42 0.79 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.04 0.65 5.84 -51.93 -0.30 0.35 16 30 H 0.05 1.33 8.03 -51.93 -0.42 0.91 16 31 H 0.08 1.93 7.53 -51.93 -0.39 1.54 16 32 H 0.38 10.09 7.56 45.56 0.34 10.44 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.07 1.73 4.88 -51.92 -0.25 1.47 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.80 6.76 -51.93 -0.35 0.45 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -29.76 315.67 -9.23 -38.99 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.64 Total: 10.73 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.80 Total: -10.40 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.73 Total: -43.53 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.46 Total: -16.04 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.33 Total: -0.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.76 -9.23 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds