Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47358 * 2 1 4 4 N 1.29024 * 124.91567 * 90.04291 * 3 2 1 5 5 C 1.31784 * 117.12334 * 179.68067 * 4 3 2 6 6 C 1.33644 * 114.49864 * 0.52098 * 5 4 3 7 7 C 1.50701 * 126.03834 * 179.79301 * 6 5 4 8 8 N 1.46900 * 109.47223 * 89.71225 * 7 6 5 9 9 C 1.47443 * 111.00227 * 69.87126 * 8 7 6 10 10 C 1.54312 * 107.23612 * 236.74273 * 9 8 7 11 11 C 1.55142 * 103.17714 * 337.62814 * 10 9 8 12 12 O 1.42900 * 110.99267 * 277.64922 * 11 10 9 13 13 C 1.50700 * 110.99048 * 153.83199 * 11 10 9 14 14 H 1.08004 * 119.99851 * 241.45911 * 13 11 10 15 15 C 1.37875 * 120.00057 * 61.45406 * 13 11 10 16 16 N 1.31517 * 120.00100 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00140 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46947 * 60.00160 * 17 15 13 19 19 H 1.48494 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47157 * 300.00184 * 17 15 13 21 21 C 1.47844 * 110.99982 * 309.02970 * 8 7 6 22 22 S 1.70975 * 124.91220 * 270.00026 * 3 2 1 23 23 H 1.08998 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46740 * 300.00335 * 1 2 3 25 25 H 1.08999 * 109.46785 * 59.99974 * 1 2 3 26 26 H 1.09002 * 109.46740 * 239.99664 * 2 1 3 27 27 H 1.08999 * 109.46785 * 120.00026 * 2 1 3 28 28 H 1.07996 * 122.75290 * 180.33394 * 5 4 3 29 29 H 1.08999 * 109.47013 * 329.71200 * 7 6 5 30 30 H 1.08994 * 109.47127 * 209.71027 * 7 6 5 31 31 H 1.08997 * 109.88254 * 117.33308 * 9 8 7 32 32 H 1.09001 * 110.02167 * 356.22840 * 9 8 7 33 33 H 1.09002 * 110.70596 * 96.10119 * 10 9 8 34 34 H 1.09005 * 110.70742 * 219.16269 * 10 9 8 35 35 H 0.96696 * 113.99925 * 298.54409 * 12 11 10 36 36 H 0.96993 * 120.00152 * 179.97438 * 16 15 13 37 37 H 1.08999 * 110.37744 * 265.19940 * 21 8 7 38 38 H 1.09008 * 110.37208 * 27.53592 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2794 2.1168 1.0580 5 6 2.7207 3.3456 0.8793 6 6 2.8430 3.7099 -0.4007 7 6 3.3176 5.0504 -0.8995 8 7 4.7772 5.0234 -1.0627 9 6 5.1667 4.1608 -2.1933 10 6 6.1330 3.0918 -1.6411 11 6 6.6852 3.7483 -0.3484 12 8 7.7575 4.6443 -0.6471 13 6 7.1199 2.7018 0.6451 14 1 6.6419 2.6435 1.6119 15 6 8.1277 1.8189 0.3199 16 7 8.7101 1.8903 -0.8571 17 14 8.6671 0.5223 1.5517 18 1 7.5154 -0.3545 1.8837 19 1 9.7587 -0.2950 0.9640 20 1 9.1562 1.1859 2.7868 21 6 5.4380 4.5222 0.1612 22 16 2.3587 2.3434 -1.4020 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9609 4.0053 1.7000 29 1 3.0467 5.8227 -0.1796 30 1 2.8487 5.2678 -1.8592 31 1 5.6682 4.7549 -2.9572 32 1 4.2849 3.6802 -2.6170 33 1 5.5972 2.1718 -1.4076 34 1 6.9386 2.8979 -2.3492 35 1 8.5210 4.2197 -1.0616 36 1 9.4193 1.2694 -1.0858 37 1 5.7417 5.3543 0.7964 38 1 4.7719 3.8522 0.7048 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -3.494776 kcal Electronic energy + Delta-G solvation = -20858.173050 eV Core-core repulsion = 17827.274072 eV Total energy + Delta-G solvation = -3030.898978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78109 -38.26539 -35.10281 -33.78525 -32.12099 -31.05727 -28.55833 -28.08438 -26.17008 -24.87353 -23.37324 -22.48815 -20.30583 -19.59363 -18.91962 -17.68524 -17.07723 -15.53908 -15.20021 -14.86378 -14.80822 -14.44022 -14.27458 -13.76098 -13.65985 -13.44229 -12.75831 -12.64700 -12.16798 -12.09425 -11.76431 -11.54565 -11.35530 -11.26349 -11.16852 -10.97615 -10.82595 -10.74026 -10.44415 -10.30333 -9.86010 -9.36415 -9.20766 -8.97351 -8.58559 -8.47026 -8.08200 -7.75301 -6.19711 -4.27090 0.94243 1.57937 1.98531 3.09264 3.24642 3.28695 3.32837 4.27163 4.30742 4.66645 4.95172 5.07265 5.12627 5.15573 5.21638 5.27607 5.61123 5.67841 5.70750 5.81823 5.85763 5.89495 6.02720 6.04600 6.11057 6.18229 6.41777 6.46478 6.65740 6.85866 7.06734 7.41885 7.49358 7.55405 7.64879 7.83178 7.98726 8.18067 8.74688 9.41024 9.52479 10.87326 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.007098 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.379624 B = 3943.710910 C = 5022.094790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.041 3.959 4 N -0.469 5.469 5 C 0.046 3.954 6 C -0.241 4.241 7 C 0.123 3.877 8 N -0.511 5.511 9 C 0.039 3.961 10 C -0.140 4.140 11 C 0.255 3.745 12 O -0.580 6.580 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.043 3.957 22 S 0.116 5.884 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.172 0.828 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.377 0.623 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 -0.928 -2.499 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.237 4.237 4 N -0.183 5.183 5 C -0.106 4.106 6 C -0.364 4.364 7 C -0.008 4.008 8 N -0.233 5.233 9 C -0.089 4.089 10 C -0.179 4.179 11 C 0.215 3.785 12 O -0.388 6.388 13 C -0.570 4.570 14 H 0.076 0.924 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.084 4.084 22 S 0.370 5.630 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.189 0.811 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.154 -0.476 -3.011 14.479 hybrid contribution 0.772 -1.521 1.266 2.124 sum -13.382 -1.997 -1.745 13.643 Atomic orbital electron populations 1.21750 0.93815 1.02197 1.02462 1.20179 0.96351 0.88046 1.04222 1.26943 1.03605 1.01803 0.91308 1.66206 1.14471 1.06047 1.31609 1.21604 1.00804 0.92398 0.95788 1.26900 1.09801 1.03083 0.96611 1.21033 0.89707 0.89116 1.00984 1.64050 1.03526 1.50067 1.05620 1.22927 0.97931 0.94366 0.93663 1.23216 0.97896 0.96236 1.00575 1.19574 0.83425 0.85440 0.90098 1.86140 1.29341 1.39401 1.83888 1.21458 1.19491 1.14673 1.01428 0.92358 1.24967 0.95654 0.97071 0.95278 1.69725 1.25268 1.38276 1.20220 0.86581 0.78263 0.81290 0.81484 1.20194 1.21106 1.20002 1.23396 0.95650 0.98233 0.91114 1.83794 1.59959 1.06187 1.13026 0.91649 0.92075 0.92547 0.89845 0.88940 0.81098 0.89021 0.90280 0.91416 0.94511 0.92785 0.90536 0.77445 0.92372 0.91200 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.90 37.16 0.37 -0.99 16 2 C -0.05 -0.56 6.52 -27.88 -0.18 -0.74 16 3 C 0.04 0.63 6.64 -13.46 -0.09 0.55 16 4 N -0.47 -8.14 10.54 -11.86 -0.13 -8.26 16 5 C 0.05 0.77 9.16 -19.18 -0.18 0.59 16 6 C -0.24 -3.87 4.63 -35.92 -0.17 -4.03 16 7 C 0.12 1.89 5.82 -4.98 -0.03 1.86 16 8 N -0.51 -9.81 5.41 -232.38 -1.26 -11.07 16 9 C 0.04 0.76 6.46 -2.84 -0.02 0.74 16 10 C -0.14 -3.26 5.36 -24.91 -0.13 -3.40 16 11 C 0.25 6.40 0.88 -89.38 -0.08 6.32 16 12 O -0.58 -15.35 13.16 -35.23 -0.46 -15.81 16 13 C -0.53 -14.55 8.28 -34.44 -0.29 -14.84 16 14 H 0.06 1.62 7.79 -52.48 -0.41 1.21 16 15 C 0.07 1.96 5.29 -17.82 -0.09 1.86 16 16 N -0.90 -24.17 10.75 55.43 0.60 -23.57 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 C 0.04 0.94 5.68 -2.04 -0.01 0.93 16 22 S 0.12 1.72 21.81 -107.50 -2.35 -0.63 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.17 2.63 7.89 -52.49 -0.41 2.22 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.65 5.97 -51.93 -0.31 0.34 16 33 H 0.05 1.32 8.03 -51.93 -0.42 0.90 16 34 H 0.08 1.90 7.53 -51.93 -0.39 1.51 16 35 H 0.38 10.01 7.56 45.56 0.34 10.35 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 38 H 0.06 1.35 4.27 -51.92 -0.22 1.13 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -29.27 317.67 -9.48 -38.74 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.75 Total: 10.79 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.90 Total: -11.15 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.79 Total: -42.91 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.46 Total: -15.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.35 Total: -0.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.27 -9.48 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.249 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds