Wall clock time and date at job start Tue Mar 31 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46806 * 2 1 4 4 N 1.29026 * 124.91371 * 89.96305 * 3 2 1 5 5 C 1.31783 * 117.12673 * 179.75261 * 4 3 2 6 6 C 1.33642 * 114.49803 * 0.51601 * 5 4 3 7 7 C 1.50703 * 126.04139 * 179.79020 * 6 5 4 8 8 N 1.46897 * 109.46987 * 89.71676 * 7 6 5 9 9 C 1.47899 * 111.00068 * 290.12747 * 8 7 6 10 10 C 1.53997 * 107.05889 * 145.84368 * 9 8 7 11 11 C 1.54593 * 105.13807 * 358.77516 * 10 9 8 12 12 O 1.42904 * 110.72258 * 96.40366 * 11 10 9 13 13 C 1.50705 * 110.72583 * 219.68092 * 11 10 9 14 14 H 1.07993 * 119.99953 * 118.54560 * 13 11 10 15 15 C 1.37878 * 119.99835 * 298.55374 * 13 11 10 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99873 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47393 * 89.99416 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99665 * 17 15 13 20 20 H 1.48501 * 109.47020 * 329.99469 * 17 15 13 21 21 C 1.48538 * 111.00123 * 47.52589 * 8 7 6 22 22 S 1.70978 * 124.92076 * 270.00415 * 3 2 1 23 23 H 1.08999 * 109.46845 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46996 * 299.99415 * 1 2 3 25 25 H 1.08991 * 109.47346 * 59.99640 * 1 2 3 26 26 H 1.08996 * 109.47280 * 240.00390 * 2 1 3 27 27 H 1.08999 * 109.47340 * 120.00022 * 2 1 3 28 28 H 1.07996 * 122.75957 * 180.33143 * 5 4 3 29 29 H 1.08999 * 109.46889 * 329.71999 * 7 6 5 30 30 H 1.08997 * 109.46972 * 209.71756 * 7 6 5 31 31 H 1.09004 * 109.91646 * 26.49394 * 9 8 7 32 32 H 1.09001 * 110.08341 * 265.29071 * 9 8 7 33 33 H 1.09004 * 110.30998 * 117.69119 * 10 9 8 34 34 H 1.08998 * 110.30811 * 239.85930 * 10 9 8 35 35 H 0.96700 * 114.00523 * 61.45046 * 12 11 10 36 36 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 37 37 H 1.09007 * 110.66246 * 318.71191 * 21 8 7 38 38 H 1.08993 * 110.66671 * 81.67342 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2778 2.1174 1.0580 5 6 2.7178 3.3466 0.8795 6 6 2.8406 3.7109 -0.4005 7 6 3.3140 5.0518 -0.8993 8 7 4.7738 5.0264 -1.0615 9 6 5.4521 4.9705 0.2516 10 6 6.7242 4.1226 0.0672 11 6 6.7038 3.6809 -1.4142 12 8 7.5041 4.5543 -2.2134 13 6 7.1689 2.2540 -1.5517 14 1 6.5031 1.5055 -1.9550 15 6 8.4446 1.9043 -1.1626 16 7 9.2556 2.8159 -0.6718 17 14 9.0209 0.1356 -1.3324 18 1 9.6428 -0.0565 -2.6672 19 1 10.0184 -0.1639 -0.2739 20 1 7.8596 -0.7792 -1.1913 21 6 5.2070 3.8085 -1.7932 22 16 2.3584 2.3437 -1.4019 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.9567 4.0068 1.7001 29 1 3.0418 5.8239 -0.1796 30 1 2.8455 5.2684 -1.8593 31 1 4.7980 4.5033 0.9879 32 1 5.7197 5.9756 0.5777 33 1 7.6114 4.7222 0.2710 34 1 6.6966 3.2517 0.7221 35 1 8.4383 4.5700 -1.9641 36 1 10.1531 2.5699 -0.3984 37 1 4.6483 2.9364 -1.4533 38 1 5.0899 3.9437 -2.8684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592521819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:33 Heat of formation + Delta-G solvation = -4.385752 kcal Electronic energy + Delta-G solvation = -20686.287106 eV Core-core repulsion = 17655.349493 eV Total energy + Delta-G solvation = -3030.937614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80108 -38.27247 -35.15533 -33.80888 -32.10626 -31.14946 -28.58920 -28.07453 -26.08893 -24.86429 -23.58743 -22.48042 -20.28647 -19.78860 -18.75056 -17.81119 -17.06252 -15.44316 -15.25409 -15.09872 -14.78941 -14.43893 -14.18079 -13.86454 -13.68786 -13.36777 -13.01907 -12.56392 -12.19117 -12.11116 -11.74140 -11.69740 -11.39054 -11.27657 -11.22698 -10.99738 -10.73748 -10.66553 -10.44327 -10.35268 -9.82442 -9.44311 -9.15574 -8.88178 -8.65763 -8.56699 -8.09637 -7.80617 -6.19622 -4.27391 0.87584 1.52255 1.94062 3.01043 3.22534 3.29500 3.32447 4.21187 4.30186 4.66109 4.90992 5.05943 5.09373 5.11628 5.14730 5.28589 5.56036 5.67740 5.71339 5.73310 5.82475 5.89933 5.99579 6.00929 6.07203 6.19112 6.34911 6.46726 6.58305 6.87034 7.04947 7.36839 7.50868 7.52444 7.60555 7.82732 7.91094 8.19475 8.74649 9.41193 9.56052 10.87576 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.006527 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.324402 B = 4289.077130 C = 5363.610684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.038 3.962 4 N -0.473 5.473 5 C 0.040 3.960 6 C -0.243 4.243 7 C 0.118 3.882 8 N -0.498 5.498 9 C 0.028 3.972 10 C -0.127 4.127 11 C 0.259 3.741 12 O -0.581 6.581 13 C -0.535 4.535 14 H 0.059 0.941 15 C 0.072 3.928 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.041 3.959 22 S 0.132 5.868 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.170 0.830 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.377 0.623 36 H 0.266 0.734 37 H 0.057 0.943 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 -1.114 1.363 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.239 4.239 4 N -0.187 5.187 5 C -0.112 4.112 6 C -0.366 4.366 7 C -0.013 4.013 8 N -0.220 5.220 9 C -0.100 4.100 10 C -0.166 4.166 11 C 0.218 3.782 12 O -0.388 6.388 13 C -0.574 4.574 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.086 4.086 22 S 0.387 5.613 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.187 0.813 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.679 -0.920 0.307 14.711 hybrid contribution 1.014 -1.234 1.564 2.236 sum -13.664 -2.154 1.871 13.959 Atomic orbital electron populations 1.21752 0.93772 1.02261 1.02482 1.20187 0.96398 0.87952 1.04277 1.26981 1.03585 1.01888 0.91487 1.66219 1.14739 1.06037 1.31715 1.21620 1.01383 0.92458 0.95708 1.26892 1.09810 1.03272 0.96587 1.21002 0.90252 0.89007 1.01072 1.65196 1.02357 1.38716 1.15695 1.23023 0.96878 1.00019 0.90042 1.22901 0.94759 0.97954 1.00976 1.19300 0.85463 0.87989 0.85415 1.86142 1.24011 1.67436 1.61253 1.21567 0.98926 0.94196 1.42686 0.92288 1.24979 0.96497 0.97746 0.93827 1.69731 1.07644 1.33423 1.42542 0.86526 0.78572 0.84592 0.77945 1.20373 1.21083 1.19861 1.23500 0.97296 0.89697 0.98127 1.83986 1.59064 1.05698 1.12585 0.91592 0.92113 0.92480 0.89701 0.88968 0.81262 0.89303 0.89851 0.94612 0.91672 0.91497 0.92258 0.77404 0.92391 0.92554 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.89 37.16 0.37 -0.94 16 2 C -0.05 -0.54 6.52 -27.88 -0.18 -0.72 16 3 C 0.04 0.57 6.64 -13.46 -0.09 0.48 16 4 N -0.47 -7.82 10.54 -11.86 -0.13 -7.95 16 5 C 0.04 0.64 9.90 -19.18 -0.19 0.45 16 6 C -0.24 -3.81 4.25 -35.92 -0.15 -3.97 16 7 C 0.12 1.81 6.03 -4.98 -0.03 1.78 16 8 N -0.50 -9.64 5.54 -231.89 -1.28 -10.92 16 9 C 0.03 0.55 6.46 -2.75 -0.02 0.53 16 10 C -0.13 -3.00 5.26 -25.37 -0.13 -3.13 16 11 C 0.26 6.52 0.95 -89.91 -0.09 6.44 16 12 O -0.58 -15.46 13.09 -35.23 -0.46 -15.92 16 13 C -0.54 -14.55 8.14 -34.44 -0.28 -14.83 16 14 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 15 C 0.07 1.93 5.28 -17.82 -0.09 1.83 16 16 N -0.89 -24.16 11.02 55.43 0.61 -23.55 16 17 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.04 0.91 5.34 -1.90 -0.01 0.90 16 22 S 0.13 1.94 21.31 -107.50 -2.29 -0.35 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.17 2.42 7.42 -52.49 -0.39 2.04 16 29 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.65 5.31 -51.93 -0.28 0.37 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.65 7.99 -51.93 -0.41 1.23 16 34 H 0.06 1.49 7.84 -51.93 -0.41 1.08 16 35 H 0.38 10.09 7.48 45.56 0.34 10.43 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.06 1.22 4.58 -50.98 -0.23 0.98 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -29.28 316.94 -9.42 -38.69 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.72 Total: 10.49 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.90 Total: -11.18 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.80 Total: -42.43 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.46 Total: -15.92 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.29 Total: -0.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.28 -9.42 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.307 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds