Wall clock time and date at job start Tue Mar 31 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46806 * 2 1 4 4 N 1.29026 * 124.91371 * 89.96305 * 3 2 1 5 5 C 1.31783 * 117.12673 * 179.75261 * 4 3 2 6 6 C 1.33642 * 114.49803 * 0.51601 * 5 4 3 7 7 C 1.50703 * 126.04139 * 179.79020 * 6 5 4 8 8 N 1.46897 * 109.46987 * 89.71676 * 7 6 5 9 9 C 1.47899 * 111.00068 * 290.12747 * 8 7 6 10 10 C 1.53997 * 107.05889 * 145.84368 * 9 8 7 11 11 C 1.54593 * 105.13807 * 358.77516 * 10 9 8 12 12 O 1.42904 * 110.72258 * 96.40366 * 11 10 9 13 13 C 1.50705 * 110.72583 * 219.68092 * 11 10 9 14 14 H 1.07993 * 119.99953 * 118.54560 * 13 11 10 15 15 C 1.37878 * 119.99835 * 298.55374 * 13 11 10 16 16 N 1.31514 * 120.00255 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99873 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47393 * 89.99416 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99665 * 17 15 13 20 20 H 1.48501 * 109.47020 * 329.99469 * 17 15 13 21 21 C 1.48538 * 111.00123 * 47.52589 * 8 7 6 22 22 S 1.70978 * 124.92076 * 270.00415 * 3 2 1 23 23 H 1.08999 * 109.46845 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46996 * 299.99415 * 1 2 3 25 25 H 1.08991 * 109.47346 * 59.99640 * 1 2 3 26 26 H 1.08996 * 109.47280 * 240.00390 * 2 1 3 27 27 H 1.08999 * 109.47340 * 120.00022 * 2 1 3 28 28 H 1.07996 * 122.75957 * 180.33143 * 5 4 3 29 29 H 1.08999 * 109.46889 * 329.71999 * 7 6 5 30 30 H 1.08997 * 109.46972 * 209.71756 * 7 6 5 31 31 H 1.09004 * 109.91646 * 26.49394 * 9 8 7 32 32 H 1.09001 * 110.08341 * 265.29071 * 9 8 7 33 33 H 1.09004 * 110.30998 * 117.69119 * 10 9 8 34 34 H 1.08998 * 110.30811 * 239.85930 * 10 9 8 35 35 H 0.96700 * 114.00523 * 61.45046 * 12 11 10 36 36 H 0.96994 * 120.00103 * 180.02562 * 16 15 13 37 37 H 1.09007 * 110.66246 * 318.71191 * 21 8 7 38 38 H 1.08993 * 110.66671 * 81.67342 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2778 2.1174 1.0580 5 6 2.7178 3.3466 0.8795 6 6 2.8406 3.7109 -0.4005 7 6 3.3140 5.0518 -0.8993 8 7 4.7738 5.0264 -1.0615 9 6 5.4521 4.9705 0.2516 10 6 6.7242 4.1226 0.0672 11 6 6.7038 3.6809 -1.4142 12 8 7.5041 4.5543 -2.2134 13 6 7.1689 2.2540 -1.5517 14 1 6.5031 1.5055 -1.9550 15 6 8.4446 1.9043 -1.1626 16 7 9.2556 2.8159 -0.6718 17 14 9.0209 0.1356 -1.3324 18 1 9.6428 -0.0565 -2.6672 19 1 10.0184 -0.1639 -0.2739 20 1 7.8596 -0.7792 -1.1913 21 6 5.2070 3.8085 -1.7932 22 16 2.3584 2.3437 -1.4019 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.9567 4.0068 1.7001 29 1 3.0418 5.8239 -0.1796 30 1 2.8455 5.2684 -1.8593 31 1 4.7980 4.5033 0.9879 32 1 5.7197 5.9756 0.5777 33 1 7.6114 4.7222 0.2710 34 1 6.6966 3.2517 0.7221 35 1 8.4383 4.5700 -1.9641 36 1 10.1531 2.5699 -0.3984 37 1 4.6483 2.9364 -1.4533 38 1 5.0899 3.9437 -2.8684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592521819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:33 Heat of formation + Delta-G solvation = -25.686674 kcal Electronic energy + Delta-G solvation = -20687.210783 eV Core-core repulsion = 17655.349493 eV Total energy + Delta-G solvation = -3031.861291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07927 -39.85797 -36.88700 -34.86164 -34.18472 -32.65068 -30.00545 -29.88222 -27.43250 -26.48378 -24.96210 -23.55380 -21.85164 -21.58543 -20.03105 -19.10119 -18.95380 -17.06504 -16.94452 -16.51372 -16.43140 -15.73682 -15.41330 -15.33447 -14.96381 -14.80039 -14.41468 -14.15798 -13.68790 -13.46242 -13.20612 -13.16110 -12.94676 -12.75465 -12.54822 -12.51166 -12.32911 -12.22081 -12.07089 -11.97141 -11.68815 -11.09596 -10.63181 -10.60796 -10.16324 -10.07545 -9.83074 -9.32062 -8.23491 -6.38729 -0.29486 0.37455 0.76973 1.36727 1.38509 1.47328 1.81759 2.35475 3.01005 3.13184 3.22104 3.83671 3.93616 3.99114 4.03809 4.15906 4.24183 4.30750 4.35384 4.44624 4.63721 4.69092 4.73918 4.80701 4.85576 4.96725 5.01916 5.06924 5.17775 5.21103 5.30957 5.46853 5.54633 5.71389 5.85592 6.08993 6.22895 6.66431 6.73948 7.32772 7.46351 8.82081 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.006527 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.324402 B = 4289.077130 C = 5363.610684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C 0.039 3.961 4 N -0.500 5.500 5 C 0.033 3.967 6 C -0.257 4.257 7 C 0.119 3.881 8 N -0.504 5.504 9 C 0.037 3.963 10 C -0.118 4.118 11 C 0.241 3.759 12 O -0.589 6.589 13 C -0.560 4.560 14 H 0.050 0.950 15 C 0.031 3.969 16 N -0.910 5.910 17 Si 0.953 3.047 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.272 1.272 21 C 0.052 3.948 22 S 0.135 5.865 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.183 0.817 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.371 0.629 36 H 0.268 0.732 37 H 0.059 0.941 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.569 -1.650 1.464 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.093 4.093 3 C -0.239 4.239 4 N -0.215 5.215 5 C -0.119 4.119 6 C -0.380 4.380 7 C -0.011 4.011 8 N -0.226 5.226 9 C -0.090 4.090 10 C -0.157 4.157 11 C 0.201 3.799 12 O -0.396 6.396 13 C -0.598 4.598 14 H 0.069 0.931 15 C -0.170 4.170 16 N -0.549 5.549 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.076 4.076 22 S 0.391 5.609 23 H 0.108 0.892 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.199 0.801 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.219 0.781 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.995 -1.448 0.403 16.065 hybrid contribution 1.395 -1.094 1.533 2.344 sum -14.600 -2.541 1.936 14.945 Atomic orbital electron populations 1.21719 0.91901 1.03754 1.02200 1.20410 0.97947 0.86007 1.04915 1.27620 1.02231 1.02970 0.91049 1.66273 1.16037 1.06596 1.32549 1.21895 1.01059 0.92622 0.96276 1.26898 1.10726 1.03624 0.96708 1.21114 0.87546 0.89683 1.02749 1.65129 1.05031 1.37191 1.15237 1.22929 0.95192 1.00180 0.90742 1.22677 0.96235 0.97318 0.99505 1.19561 0.87027 0.87066 0.86284 1.86134 1.23781 1.67824 1.61893 1.21821 0.99439 0.95229 1.43314 0.93136 1.25655 0.96558 1.01280 0.93460 1.69814 1.07775 1.34800 1.42526 0.85634 0.78099 0.80378 0.78033 1.19911 1.20538 1.19629 1.23290 0.95214 0.91133 0.97985 1.83936 1.58863 1.05586 1.12564 0.89234 0.92987 0.92134 0.88391 0.88948 0.80062 0.86645 0.88485 0.93026 0.90017 0.93355 0.94648 0.78059 0.92227 0.92290 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.05 -1.09 6.52 29.85 0.19 -0.89 16 3 C 0.04 1.10 6.64 88.52 0.59 1.69 16 4 N -0.50 -15.96 10.54 -191.44 -2.02 -17.98 16 5 C 0.03 1.01 9.90 83.66 0.83 1.83 16 6 C -0.26 -7.64 4.25 24.64 0.10 -7.53 16 7 C 0.12 3.39 6.03 85.56 0.52 3.90 16 8 N -0.50 -18.74 5.54 -887.57 -4.91 -23.65 16 9 C 0.04 1.41 6.46 86.45 0.56 1.97 16 10 C -0.12 -5.63 5.26 31.47 0.17 -5.46 16 11 C 0.24 12.24 0.95 -10.34 -0.01 12.23 16 12 O -0.59 -31.80 13.09 -148.98 -1.95 -33.75 16 13 C -0.56 -30.75 8.14 25.60 0.21 -30.54 16 14 H 0.05 2.78 7.78 -2.91 -0.02 2.76 16 15 C 0.03 1.68 5.28 84.65 0.45 2.13 16 16 N -0.91 -49.65 11.02 21.45 0.24 -49.42 16 17 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.05 2.26 5.34 86.65 0.46 2.72 16 22 S 0.13 3.80 21.31 -56.49 -1.20 2.60 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 28 H 0.18 4.86 7.42 -2.91 -0.02 4.84 16 29 H 0.12 2.68 8.08 -2.39 -0.02 2.66 16 30 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.79 5.31 -2.39 -0.01 1.77 16 32 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.05 2.42 7.99 -2.39 -0.02 2.40 16 34 H 0.03 1.80 7.84 -2.39 -0.02 1.78 16 35 H 0.37 20.37 7.48 -74.06 -0.55 19.82 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.06 2.52 4.58 -2.98 -0.01 2.51 16 38 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -62.15 316.94 -2.54 -64.69 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.51 Total: 32.08 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.78 Total: -19.46 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -6.70 Total: -91.05 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.95 Total: -33.75 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.20 Total: 2.60 kcal Total: -62.15 -2.54 -64.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592521819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.004 kcal (2) G-P(sol) polarization free energy of solvation -62.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds