Wall clock time and date at job start Tue Mar 31 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47440 * 2 1 4 4 C 1.53005 * 109.47221 * 239.99875 * 2 1 3 5 5 C 1.50707 * 109.47004 * 120.00173 * 2 1 3 6 6 N 1.30070 * 126.20654 * 59.97506 * 5 2 1 7 7 N 1.28651 * 109.56224 * 180.02562 * 6 5 2 8 8 C 1.31143 * 109.31283 * 359.97438 * 7 6 5 9 9 S 1.76202 * 126.38344 * 180.02562 * 8 7 6 10 10 C 1.80995 * 99.99826 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.46926 * 184.52340 * 10 9 8 12 12 C 1.50710 * 115.55018 * 40.13127 * 11 10 9 13 13 H 1.07998 * 119.99652 * 270.14587 * 12 11 10 14 14 C 1.37869 * 119.99949 * 90.15149 * 12 11 10 15 15 N 1.31515 * 120.00212 * 173.61416 * 14 12 11 16 16 Si 1.86803 * 120.00090 * 353.60860 * 14 12 11 17 17 H 1.48502 * 109.47129 * 91.59575 * 16 14 12 18 18 H 1.48507 * 109.47375 * 211.59274 * 16 14 12 19 19 H 1.48494 * 109.47155 * 331.59616 * 16 14 12 20 20 C 1.53004 * 117.50128 * 254.42414 * 11 10 9 21 21 C 1.53003 * 117.50139 * 185.79809 * 11 10 9 22 22 O 1.34642 * 107.23585 * 0.26208 * 8 7 6 23 23 H 1.08998 * 109.47095 * 300.00015 * 1 2 3 24 24 H 1.09001 * 109.46830 * 59.99612 * 1 2 3 25 25 H 1.08998 * 109.47472 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.47202 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47367 * 299.99472 * 3 2 1 28 28 H 1.09001 * 109.47484 * 59.99996 * 3 2 1 29 29 H 1.09000 * 109.47111 * 300.00098 * 4 2 1 30 30 H 1.08998 * 109.47014 * 60.00003 * 4 2 1 31 31 H 1.09000 * 109.47153 * 180.02562 * 4 2 1 32 32 H 1.08995 * 109.47191 * 64.52428 * 10 9 8 33 33 H 1.09004 * 109.47253 * 304.51881 * 10 9 8 34 34 H 0.97002 * 120.00606 * 179.97438 * 15 14 12 35 35 H 1.08994 * 117.49422 * 359.97438 * 20 11 10 36 36 H 1.08993 * 117.50185 * 145.01935 * 20 11 10 37 37 H 1.08991 * 117.50141 * 214.97678 * 21 11 10 38 38 H 1.08998 * 117.49319 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 7 1.7932 -1.9472 1.5551 7 7 2.3775 -2.2211 2.6680 8 6 3.0160 -1.1584 3.0957 9 16 3.9660 -1.0345 4.5745 10 6 3.7661 -2.7143 5.2181 11 6 4.4322 -2.8168 6.5916 12 6 4.2445 -1.6256 7.4955 13 1 4.9533 -0.8111 7.4696 14 6 3.1681 -1.5756 8.3556 15 7 3.0711 -0.5995 9.2316 16 14 1.8474 -2.8943 8.2764 17 1 2.1873 -3.9924 9.2166 18 1 0.5373 -2.3062 8.6552 19 1 1.7675 -3.4325 6.8948 20 6 5.7634 -3.5663 6.6772 21 6 4.4916 -4.1982 7.2468 22 8 2.8060 -0.1782 2.1969 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 4.2328 -3.4233 4.5342 33 1 2.7046 -2.9440 5.3110 34 1 2.3136 -0.5641 9.8365 35 1 6.1643 -3.9867 5.7550 36 1 6.5037 -3.1978 7.3872 37 1 4.3954 -4.2454 8.3314 38 1 4.0557 -5.0339 6.6993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594885934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:27 Heat of formation + Delta-G solvation = 51.331320 kcal Electronic energy + Delta-G solvation = -19828.118693 eV Core-core repulsion = 16799.597153 eV Total energy + Delta-G solvation = -3028.521540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.76835 -37.26513 -37.13510 -35.82917 -32.23569 -30.50163 -28.21450 -27.63741 -27.58687 -25.59773 -24.08939 -23.31775 -21.74328 -20.11396 -19.39761 -17.92290 -17.09052 -16.51424 -16.08612 -15.43225 -15.02353 -14.33818 -14.21872 -13.93791 -13.91737 -13.27065 -12.73035 -12.64737 -12.58369 -12.34997 -12.12213 -12.09178 -11.96151 -11.66660 -11.40483 -11.28047 -11.19877 -10.93591 -10.77685 -10.55772 -10.33723 -10.10380 -9.93867 -9.75526 -9.17104 -8.71962 -8.55945 -7.24028 -6.24888 -4.29091 1.14210 1.34998 2.60984 2.67321 2.98382 3.23154 3.33912 3.37661 4.15274 4.32252 4.56398 4.56853 4.75956 4.82530 5.02802 5.25608 5.32353 5.33255 5.43722 5.48655 5.53953 5.54253 5.56681 5.62531 5.75541 5.75617 5.92903 5.98078 6.00156 6.02879 6.05602 6.28726 6.38560 6.59278 6.82232 7.01422 7.55661 8.31134 8.51682 8.77184 9.37704 10.85651 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.004503 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.259326 B = 6216.246864 C = 6428.864916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.037 3.963 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.148 3.852 6 N -0.276 5.276 7 N -0.311 5.311 8 C 0.129 3.871 9 S 0.117 5.883 10 C -0.081 4.081 11 C 0.004 3.996 12 C -0.493 4.493 13 H 0.085 0.915 14 C 0.090 3.910 15 N -0.883 5.883 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.256 1.256 20 C -0.174 4.174 21 C -0.187 4.187 22 O -0.209 6.209 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 1.143 -17.107 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.035 3.965 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.068 4.068 6 N -0.123 5.123 7 N -0.163 5.163 8 C -0.186 4.186 9 S 0.351 5.649 10 C -0.230 4.230 11 C 0.001 3.999 12 C -0.533 4.533 13 H 0.103 0.897 14 C -0.115 4.115 15 N -0.519 5.519 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.218 1.218 19 H -0.181 1.181 20 C -0.211 4.211 21 C -0.226 4.226 22 O -0.090 6.090 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.767 0.953 -16.560 16.681 hybrid contribution -1.084 -0.625 -0.255 1.277 sum -2.851 0.329 -16.815 17.058 Atomic orbital electron populations 1.21922 0.91582 1.03548 1.02782 1.19106 0.96431 0.94655 0.86317 1.21934 1.02043 0.93452 1.03114 1.21913 1.01609 1.01205 0.94984 1.27809 0.94767 0.90808 0.93440 1.73934 1.18510 1.12266 1.07543 1.74900 1.12263 1.23066 1.06038 1.31374 1.03212 0.84664 0.99318 1.86824 1.55595 1.19259 1.03258 1.23730 1.05856 0.93081 1.00330 1.19069 0.96566 0.93130 0.91127 1.20184 1.11567 1.02454 1.19059 0.89695 1.24925 0.97321 0.95352 0.93933 1.69882 1.30473 1.32155 1.19347 0.86960 0.81174 0.82142 0.79725 1.20081 1.21753 1.18087 1.22943 0.91645 1.04972 1.01587 1.23010 1.02789 0.96422 1.00423 1.84967 1.55463 1.40262 1.28312 0.92032 0.90781 0.91129 0.91699 0.90892 0.91612 0.91143 0.90789 0.92126 0.90440 0.88737 0.92225 0.90586 0.89001 0.88846 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.46 37.15 0.31 -1.02 16 2 C 0.04 0.40 0.99 -155.66 -0.15 0.25 16 3 C -0.15 -1.36 8.05 37.15 0.30 -1.06 16 4 C -0.14 -1.26 8.46 37.16 0.31 -0.94 16 5 C 0.15 2.35 6.57 -13.02 -0.09 2.27 16 6 N -0.28 -5.11 12.20 32.59 0.40 -4.71 16 7 N -0.31 -6.35 11.63 30.29 0.35 -5.99 16 8 C 0.13 2.54 8.53 52.47 0.45 2.99 16 9 S 0.12 2.33 21.16 -107.50 -2.28 0.06 16 10 C -0.08 -1.67 5.17 37.16 0.19 -1.48 16 11 C 0.00 0.09 1.12 -155.65 -0.17 -0.09 16 12 C -0.49 -12.77 8.14 -34.44 -0.28 -13.05 16 13 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 14 C 0.09 2.43 5.46 -17.82 -0.10 2.34 16 15 N -0.88 -25.55 13.96 55.43 0.77 -24.78 16 16 Si 0.87 20.96 25.13 -169.99 -4.27 16.69 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.26 -5.94 5.34 56.52 0.30 -5.64 16 20 C -0.17 -3.32 9.88 -26.72 -0.26 -3.58 16 21 C -0.19 -3.76 7.67 -26.73 -0.20 -3.96 16 22 O -0.21 -3.72 10.35 3.51 0.04 -3.69 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.45 7.95 -51.92 -0.41 1.03 16 33 H 0.09 2.07 6.27 -51.91 -0.33 1.75 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 36 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.09 1.97 7.24 -51.93 -0.38 1.59 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -29.63 327.96 -5.58 -35.21 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.84 Total: -0.39 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 0.31 Total: -17.34 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 1.52 Total: -35.49 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.27 Total: 16.69 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.28 Total: 0.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.63 -5.58 -35.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594885934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.537 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds