Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 H 1.08996 * 109.46989 * 177.84283 * 3 2 1 5 5 C 1.50699 * 109.47049 * 57.84337 * 3 2 1 6 6 H 1.07996 * 119.99742 * 240.00243 * 5 3 2 7 7 C 1.37877 * 120.00088 * 59.99817 * 5 3 2 8 8 N 1.31512 * 119.99931 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00157 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46730 * 89.99932 * 9 7 5 11 11 H 1.48495 * 109.47031 * 210.00116 * 9 7 5 12 12 H 1.48501 * 109.46720 * 330.00404 * 9 7 5 13 13 N 1.46901 * 109.47219 * 297.84341 * 3 2 1 14 14 C 1.46895 * 110.99885 * 274.39540 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.91929 * 14 13 3 16 16 C 1.38264 * 119.97481 * 259.99645 * 15 14 13 17 17 C 1.38170 * 120.02829 * 179.97438 * 16 15 14 18 18 C 1.38485 * 119.97540 * 0.02562 * 17 16 15 19 19 F 1.35099 * 120.02744 * 179.97438 * 18 17 16 20 20 C 1.38435 * 119.94543 * 0.02562 * 18 17 16 21 21 C 1.38223 * 119.97651 * 359.70053 * 20 18 17 22 22 N 1.47996 * 119.99079 * 180.29686 * 21 20 18 23 23 O 1.21801 * 120.00271 * 0.27668 * 22 21 20 24 24 O 1.21805 * 120.00137 * 180.27342 * 22 21 20 25 25 H 1.08988 * 109.47263 * 54.54250 * 1 2 3 26 26 H 1.09004 * 109.46975 * 294.53406 * 1 2 3 27 27 H 1.09006 * 109.46489 * 174.54486 * 1 2 3 28 28 H 1.08995 * 109.47368 * 120.00349 * 2 1 3 29 29 H 1.09003 * 109.47085 * 240.00740 * 2 1 3 30 30 H 0.97004 * 120.00327 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00312 * 150.43666 * 13 3 2 32 32 H 1.09002 * 109.47243 * 296.91701 * 14 13 3 33 33 H 1.09001 * 109.47481 * 56.91670 * 14 13 3 34 34 H 1.08001 * 119.98849 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.01552 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.01429 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 0.0387 5 6 1.4945 2.1682 1.2029 6 1 0.8776 3.0448 1.0708 7 6 1.7828 1.7130 2.4720 8 7 2.5343 0.6458 2.6328 9 14 1.1060 2.6120 3.9630 10 1 -0.2156 2.0412 4.3273 11 1 2.0442 2.4555 5.1033 12 1 0.9513 4.0539 3.6434 13 7 1.5933 2.1199 -1.2246 14 6 2.5248 1.8716 -2.3331 15 6 1.9959 2.5174 -3.5878 16 6 1.3387 1.7529 -4.5340 17 6 0.8529 2.3440 -5.6845 18 6 1.0250 3.7026 -5.8902 19 9 0.5509 4.2815 -7.0150 20 6 1.6841 4.4669 -4.9426 21 6 2.1643 3.8744 -3.7898 22 7 2.8632 4.6924 -2.7736 23 8 3.0109 5.8884 -2.9508 24 8 3.2908 4.1696 -1.7599 25 1 -0.3633 0.5961 -0.8370 26 1 -0.3633 0.4267 0.9349 27 1 -0.3632 -1.0231 -0.0977 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 2.7369 0.3252 3.5256 31 1 1.4737 3.1093 -1.0676 32 1 3.4997 2.2943 -2.0901 33 1 2.6236 0.7976 -2.4911 34 1 1.2042 0.6934 -4.3733 35 1 0.3392 1.7467 -6.4233 36 1 1.8186 5.5266 -5.1016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595531349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -17.944059 kcal Electronic energy + Delta-G solvation = -22358.679487 eV Core-core repulsion = 18760.940765 eV Total energy + Delta-G solvation = -3597.738722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.35971 -42.13906 -39.47957 -36.79142 -35.99276 -33.23981 -32.20515 -31.37018 -29.98688 -27.14075 -26.19110 -24.35760 -23.15212 -22.99038 -21.82125 -19.39619 -19.04118 -18.53584 -17.40369 -16.93920 -16.81146 -16.50538 -16.03529 -15.56147 -14.87655 -14.44824 -14.32021 -13.83420 -13.63203 -13.25792 -12.68971 -12.49695 -12.29855 -12.10181 -11.78737 -11.39870 -11.28152 -10.95688 -10.90418 -10.72600 -10.64641 -10.40024 -10.08445 -9.89402 -9.74398 -9.41767 -9.14885 -8.76843 -8.43615 -7.33286 -5.98679 -4.02722 -0.24375 0.58605 1.29243 1.42001 2.95083 3.33463 3.40166 3.44477 3.67123 4.13405 4.28944 4.36955 4.45807 4.59523 4.90742 5.26413 5.32846 5.36184 5.51438 5.54463 5.59668 6.02625 6.07410 6.18135 6.47918 6.57612 6.65928 6.82045 7.17232 7.24147 7.46651 7.70011 7.74911 7.80978 7.84782 8.20794 8.32618 8.60970 9.02865 9.61306 11.07684 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.004884 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.573348 B = 5731.894616 C = 6441.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.219 3.781 4 H 0.008 0.992 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.072 3.928 15 C -0.002 4.002 16 C -0.077 4.077 17 C -0.102 4.102 18 C 0.091 3.909 19 F -0.128 7.128 20 C -0.095 4.095 21 C -0.018 4.018 22 N 0.026 4.974 23 O -0.172 6.172 24 O -0.126 6.126 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.087 0.913 29 H 0.009 0.991 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 1.776 -16.898 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.026 0.974 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.302 5.302 14 C -0.057 4.057 15 C -0.004 4.004 16 C -0.096 4.096 17 C -0.120 4.120 18 C 0.071 3.929 19 F -0.106 7.106 20 C -0.115 4.115 21 C -0.102 4.102 22 N 0.545 4.455 23 O -0.383 6.383 24 O -0.345 6.345 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.106 0.894 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.561 0.826 -17.453 17.660 hybrid contribution 0.416 1.381 1.091 1.809 sum -2.146 2.207 -16.363 16.650 Atomic orbital electron populations 1.21446 0.97584 0.97045 1.01607 1.21462 0.95010 0.98245 0.99386 1.19134 0.93909 0.91225 0.84535 0.97396 1.21100 1.31500 1.11783 0.90234 0.92500 1.24832 0.95063 0.95022 0.98741 1.69873 1.37459 1.23227 1.22293 0.86583 0.78667 0.80234 0.82468 1.20785 1.21293 1.19921 1.61065 1.45578 1.16439 1.07123 1.21372 0.96521 0.99968 0.87864 1.20284 0.92528 0.89993 0.97632 1.21059 0.95674 1.01515 0.91391 1.21602 0.98672 0.92964 0.98807 1.17191 0.99956 0.91267 0.84504 1.91557 1.86160 1.84670 1.48242 1.20796 0.96749 1.02501 0.91431 1.20681 1.06092 0.91663 0.91773 1.43506 0.99415 1.01147 1.01461 1.94512 1.62233 0.97673 1.83896 1.94632 1.50035 1.74030 1.15772 0.93663 0.92846 0.96870 0.89450 0.97226 0.93000 0.85061 0.91357 0.89922 0.82379 0.82962 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.46 37.16 0.35 -2.22 16 2 C -0.10 -2.36 5.57 -26.73 -0.15 -2.51 16 3 C 0.22 5.27 2.30 -68.86 -0.16 5.11 16 4 H 0.01 0.22 7.83 -51.93 -0.41 -0.18 16 5 C -0.51 -13.54 7.33 -34.44 -0.25 -13.79 16 6 H 0.06 1.54 7.61 -52.49 -0.40 1.14 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.89 -24.83 11.34 55.43 0.63 -24.20 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.67 -13.54 5.39 -109.22 -0.59 -14.13 16 14 C 0.07 1.19 4.70 -4.98 -0.02 1.17 16 15 C 0.00 -0.03 5.42 -104.62 -0.57 -0.60 16 16 C -0.08 -0.79 9.67 -39.60 -0.38 -1.17 16 17 C -0.10 -0.88 10.03 -39.52 -0.40 -1.28 16 18 C 0.09 0.92 7.30 -39.42 -0.29 0.63 16 19 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 20 C -0.09 -1.10 9.53 -39.51 -0.38 -1.48 16 21 C -0.02 -0.26 6.84 -79.97 -0.55 -0.80 16 22 N 0.03 0.45 4.45 33.95 0.15 0.60 16 23 O -0.17 -2.92 18.45 -29.46 -0.54 -3.46 16 24 O -0.13 -2.42 13.77 -29.46 -0.41 -2.83 16 25 H 0.04 0.93 7.51 -51.94 -0.39 0.54 16 26 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 2.27 6.13 -51.93 -0.32 1.95 16 29 H 0.01 0.19 7.41 -51.93 -0.38 -0.19 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.33 7.08 6.64 -39.29 -0.26 6.82 16 32 H 0.07 1.23 5.87 -51.93 -0.30 0.93 16 33 H 0.08 1.28 7.24 -51.93 -0.38 0.91 16 34 H 0.16 1.32 8.04 -52.49 -0.42 0.89 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.16 1.68 7.61 -52.49 -0.40 1.28 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -28.62 308.73 -8.00 -36.62 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.02 Total: 2.99 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.88 Total: -15.27 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.19 Total: -37.74 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.95 Total: -6.29 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.62 -8.00 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.676 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds