Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 H 1.08996 * 109.46989 * 177.84283 * 3 2 1 5 5 C 1.50699 * 109.47049 * 57.84337 * 3 2 1 6 6 H 1.07996 * 119.99742 * 240.00243 * 5 3 2 7 7 C 1.37877 * 120.00088 * 59.99817 * 5 3 2 8 8 N 1.31512 * 119.99931 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00157 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46730 * 89.99932 * 9 7 5 11 11 H 1.48495 * 109.47031 * 210.00116 * 9 7 5 12 12 H 1.48501 * 109.46720 * 330.00404 * 9 7 5 13 13 N 1.46901 * 109.47219 * 297.84341 * 3 2 1 14 14 C 1.46895 * 110.99885 * 274.39540 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.91929 * 14 13 3 16 16 C 1.38264 * 119.97481 * 259.99645 * 15 14 13 17 17 C 1.38170 * 120.02829 * 179.97438 * 16 15 14 18 18 C 1.38485 * 119.97540 * 0.02562 * 17 16 15 19 19 F 1.35099 * 120.02744 * 179.97438 * 18 17 16 20 20 C 1.38435 * 119.94543 * 0.02562 * 18 17 16 21 21 C 1.38223 * 119.97651 * 359.70053 * 20 18 17 22 22 N 1.47996 * 119.99079 * 180.29686 * 21 20 18 23 23 O 1.21801 * 120.00271 * 0.27668 * 22 21 20 24 24 O 1.21805 * 120.00137 * 180.27342 * 22 21 20 25 25 H 1.08988 * 109.47263 * 54.54250 * 1 2 3 26 26 H 1.09004 * 109.46975 * 294.53406 * 1 2 3 27 27 H 1.09006 * 109.46489 * 174.54486 * 1 2 3 28 28 H 1.08995 * 109.47368 * 120.00349 * 2 1 3 29 29 H 1.09003 * 109.47085 * 240.00740 * 2 1 3 30 30 H 0.97004 * 120.00327 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00312 * 150.43666 * 13 3 2 32 32 H 1.09002 * 109.47243 * 296.91701 * 14 13 3 33 33 H 1.09001 * 109.47481 * 56.91670 * 14 13 3 34 34 H 1.08001 * 119.98849 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.01552 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.01429 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1293 1.4428 0.0387 5 6 1.4945 2.1682 1.2029 6 1 0.8776 3.0448 1.0708 7 6 1.7828 1.7130 2.4720 8 7 2.5343 0.6458 2.6328 9 14 1.1060 2.6120 3.9630 10 1 -0.2156 2.0412 4.3273 11 1 2.0442 2.4555 5.1033 12 1 0.9513 4.0539 3.6434 13 7 1.5933 2.1199 -1.2246 14 6 2.5248 1.8716 -2.3331 15 6 1.9959 2.5174 -3.5878 16 6 1.3387 1.7529 -4.5340 17 6 0.8529 2.3440 -5.6845 18 6 1.0250 3.7026 -5.8902 19 9 0.5509 4.2815 -7.0150 20 6 1.6841 4.4669 -4.9426 21 6 2.1643 3.8744 -3.7898 22 7 2.8632 4.6924 -2.7736 23 8 3.0109 5.8884 -2.9508 24 8 3.2908 4.1696 -1.7599 25 1 -0.3633 0.5961 -0.8370 26 1 -0.3633 0.4267 0.9349 27 1 -0.3632 -1.0231 -0.0977 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 2.7369 0.3252 3.5256 31 1 1.4737 3.1093 -1.0676 32 1 3.4997 2.2943 -2.0901 33 1 2.6236 0.7976 -2.4911 34 1 1.2042 0.6934 -4.3733 35 1 0.3392 1.7467 -6.4233 36 1 1.8186 5.5266 -5.1016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595531349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -34.113376 kcal Electronic energy + Delta-G solvation = -22359.380641 eV Core-core repulsion = 18760.940765 eV Total energy + Delta-G solvation = -3598.439876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.16603 -43.37221 -40.48167 -38.25094 -37.54388 -34.83662 -33.20664 -33.03674 -31.43194 -28.62483 -27.68374 -25.80807 -24.91141 -24.04151 -22.92103 -20.96097 -20.41249 -19.74906 -18.69628 -18.43611 -17.84658 -17.53333 -16.97840 -16.84907 -16.61453 -15.93952 -15.44682 -15.29094 -14.84480 -14.72215 -14.03357 -13.93041 -13.67702 -13.48000 -13.07412 -12.88814 -12.76222 -12.61259 -12.54534 -12.37971 -12.33202 -12.10340 -11.81245 -11.53246 -11.25042 -10.77034 -10.74881 -10.50562 -10.09672 -9.03151 -8.06929 -6.17009 -1.37164 -0.30169 0.16905 0.29303 1.41613 1.43209 1.52540 2.04865 2.44954 2.79268 3.22316 3.22864 3.27893 3.61444 3.66801 3.85518 3.97882 4.32989 4.53150 4.57417 4.67221 4.74732 4.78590 4.84813 4.98402 5.02916 5.17426 5.34518 5.40811 5.43639 5.60202 5.73457 5.88559 5.93015 6.30078 6.37323 6.46495 6.74400 6.99741 7.50210 8.98143 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.004884 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.573348 B = 5731.894616 C = 6441.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.226 3.774 4 H -0.032 1.032 5 C -0.520 4.520 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.661 5.661 14 C 0.075 3.925 15 C -0.017 4.017 16 C -0.068 4.068 17 C -0.072 4.072 18 C 0.100 3.900 19 F -0.123 7.123 20 C -0.096 4.096 21 C -0.034 4.034 22 N 0.031 4.969 23 O -0.161 6.161 24 O -0.195 6.195 25 H 0.055 0.945 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.322 0.678 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.185 0.815 35 H 0.197 0.803 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 1.152 -19.577 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.118 3.882 4 H -0.014 1.014 5 C -0.558 4.558 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.291 5.291 14 C -0.054 4.054 15 C -0.019 4.019 16 C -0.087 4.087 17 C -0.090 4.090 18 C 0.080 3.920 19 F -0.101 7.101 20 C -0.116 4.116 21 C -0.119 4.119 22 N 0.543 4.457 23 O -0.380 6.380 24 O -0.399 6.399 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.203 0.797 35 H 0.214 0.786 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.423 0.128 -20.067 20.549 hybrid contribution 0.966 1.650 1.673 2.541 sum -3.457 1.778 -18.394 18.800 Atomic orbital electron populations 1.21305 0.96055 0.98575 1.00511 1.21310 0.96223 0.97054 0.98947 1.18894 0.91347 0.92304 0.85683 1.01439 1.21351 1.31238 1.11593 0.91647 0.93580 1.25503 0.95414 0.95732 1.01143 1.69995 1.38339 1.24243 1.22692 0.85710 0.78308 0.79000 0.79543 1.19976 1.20967 1.20057 1.60980 1.46323 1.15404 1.06412 1.21276 0.95167 1.00785 0.88144 1.20119 0.94438 0.89997 0.97362 1.21352 0.94173 1.02438 0.90719 1.22025 0.96311 0.92332 0.98376 1.17256 0.99022 0.91751 0.83991 1.91585 1.85927 1.84755 1.47842 1.20928 0.96579 1.03246 0.90808 1.20770 1.07573 0.91643 0.91870 1.43946 0.98917 1.01194 1.01659 1.94455 1.61341 0.98529 1.83641 1.94653 1.53120 1.74224 1.17912 0.92595 0.95595 0.94333 0.92526 0.94946 0.93041 0.86127 0.93568 0.88683 0.79746 0.78606 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 9.46 71.98 0.68 -3.82 16 2 C -0.10 -4.48 5.57 30.60 0.17 -4.31 16 3 C 0.23 11.27 2.30 44.17 0.10 11.37 16 4 H -0.03 -1.82 7.83 -2.39 -0.02 -1.84 16 5 C -0.52 -28.69 7.33 25.60 0.19 -28.50 16 6 H 0.05 2.58 7.61 -2.91 -0.02 2.56 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -52.46 11.34 21.45 0.24 -52.21 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.66 -27.28 5.39 -499.46 -2.69 -29.97 16 14 C 0.08 2.53 4.70 85.56 0.40 2.93 16 15 C -0.02 -0.44 5.42 -19.86 -0.11 -0.55 16 16 C -0.07 -1.12 9.67 22.26 0.22 -0.90 16 17 C -0.07 -0.86 10.03 22.31 0.22 -0.64 16 18 C 0.10 1.62 7.30 22.38 0.16 1.78 16 19 F -0.12 -1.95 17.27 44.97 0.78 -1.18 16 20 C -0.10 -2.01 9.53 22.31 0.21 -1.80 16 21 C -0.03 -0.95 6.84 36.37 0.25 -0.70 16 22 N 0.03 1.08 4.45 -46.49 -0.21 0.87 16 23 O -0.16 -5.55 18.45 18.88 0.35 -5.20 16 24 O -0.19 -8.06 13.77 18.88 0.26 -7.80 16 25 H 0.06 2.20 7.51 -2.39 -0.02 2.18 16 26 H 0.02 1.20 7.36 -2.39 -0.02 1.18 16 27 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 2.99 6.13 -2.39 -0.01 2.98 16 29 H 0.03 1.32 7.41 -2.39 -0.02 1.30 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.32 14.36 6.64 -89.70 -0.60 13.77 16 32 H 0.05 1.78 5.87 -2.39 -0.01 1.77 16 33 H 0.09 2.88 7.24 -2.39 -0.02 2.86 16 34 H 0.19 2.11 8.04 -2.91 -0.02 2.08 16 35 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.17 3.21 7.61 -2.91 -0.02 3.19 16 Total: -1.00 -65.34 308.73 4.23 -61.11 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.53 Total: 11.29 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 2.95 Total: -23.49 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.65 Total: -81.31 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.61 Total: -13.01 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.34 4.23 -61.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.999 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds