Wall clock time and date at job start Tue Mar 31 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 H 1.09000 * 109.47341 * 54.78607 * 3 2 1 5 5 C 1.50699 * 109.47001 * 174.78512 * 3 2 1 6 6 H 1.07999 * 120.00090 * 119.99849 * 5 3 2 7 7 C 1.37874 * 120.00050 * 300.00085 * 5 3 2 8 8 N 1.31514 * 120.00100 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47189 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46976 * 119.99947 * 9 7 5 12 12 H 1.48502 * 109.47141 * 239.99690 * 9 7 5 13 13 N 1.46901 * 109.47147 * 294.77980 * 3 2 1 14 14 C 1.46899 * 110.99809 * 158.08473 * 13 3 2 15 15 C 1.50701 * 109.47013 * 174.79418 * 14 13 3 16 16 C 1.38263 * 119.97150 * 253.95434 * 15 14 13 17 17 C 1.38185 * 120.02133 * 179.72626 * 16 15 14 18 18 C 1.38473 * 119.97510 * 0.55073 * 17 16 15 19 19 F 1.35099 * 120.02513 * 179.75073 * 18 17 16 20 20 C 1.38440 * 119.94740 * 359.72463 * 18 17 16 21 21 C 1.38217 * 119.97661 * 359.97438 * 20 18 17 22 22 N 1.47998 * 119.98805 * 180.02562 * 21 20 18 23 23 O 1.21803 * 120.00266 * 4.64427 * 22 21 20 24 24 O 1.21802 * 120.00236 * 184.64572 * 22 21 20 25 25 H 1.09003 * 109.46895 * 175.72797 * 1 2 3 26 26 H 1.08998 * 109.46970 * 55.72237 * 1 2 3 27 27 H 1.09004 * 109.47042 * 295.72648 * 1 2 3 28 28 H 1.08994 * 109.47145 * 119.99972 * 2 1 3 29 29 H 1.08996 * 109.46845 * 239.99999 * 2 1 3 30 30 H 0.96999 * 120.00305 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00607 * 282.04365 * 13 3 2 32 32 H 1.09006 * 109.47564 * 294.79669 * 14 13 3 33 33 H 1.08995 * 109.47249 * 54.79516 * 14 13 3 34 34 H 1.07999 * 119.98900 * 0.02562 * 16 15 14 35 35 H 1.08001 * 120.00796 * 180.25438 * 17 16 15 36 36 H 1.08007 * 120.01177 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5415 1.4445 0.1291 6 1 4.1495 1.8881 -0.6454 7 6 4.1389 0.8800 1.2361 8 7 3.3985 0.3402 2.1795 9 14 6.0001 0.8818 1.3959 10 1 6.5981 1.5455 0.2097 11 1 6.3907 1.6190 2.6244 12 1 6.4910 -0.5172 1.4809 13 7 1.6559 2.0977 -1.2575 14 6 1.6475 3.5590 -1.1085 15 6 1.3753 4.1987 -2.4455 16 6 2.3999 4.8201 -3.1353 17 6 2.1527 5.4021 -4.3640 18 6 0.8758 5.3727 -4.8991 19 9 0.6319 5.9458 -6.0980 20 6 -0.1504 4.7552 -4.2049 21 6 0.1005 4.1683 -2.9789 22 7 -0.9963 3.5076 -2.2367 23 8 -2.0996 3.4065 -2.7427 24 8 -0.7957 3.0650 -1.1199 25 1 -0.3633 -1.0249 -0.0766 26 1 -0.3633 0.5788 -0.8492 27 1 -0.3633 0.4461 0.9258 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8189 -0.0573 2.9581 31 1 2.2622 1.8147 -2.0126 32 1 0.8690 3.8479 -0.4022 33 1 2.6166 3.8920 -0.7370 34 1 3.3947 4.8465 -2.7159 35 1 2.9540 5.8839 -4.9046 36 1 -1.1466 4.7313 -4.6214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595531350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:25 Heat of formation + Delta-G solvation = -20.951036 kcal Electronic energy + Delta-G solvation = -22401.054823 eV Core-core repulsion = 18803.185709 eV Total energy + Delta-G solvation = -3597.869114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.32947 -41.89327 -39.41104 -36.53776 -35.88252 -33.16177 -32.12235 -31.57351 -30.05837 -27.05324 -26.18556 -24.45321 -22.91263 -22.50616 -21.59992 -19.50485 -19.18371 -18.35425 -17.17097 -16.97792 -16.66601 -16.50155 -15.99532 -15.79995 -14.89319 -14.44488 -14.05261 -13.94662 -13.44191 -12.98490 -12.84969 -12.49576 -12.19732 -12.01208 -11.58347 -11.24654 -11.11779 -11.06685 -10.96494 -10.70692 -10.64021 -10.41834 -10.06556 -9.83066 -9.57536 -9.49913 -9.13885 -8.99774 -8.40199 -7.34457 -6.02949 -4.16918 -0.10427 0.61428 1.46502 1.62802 3.01060 3.21768 3.31013 3.31599 3.71876 4.20042 4.34243 4.36413 4.42624 4.63360 4.97606 5.21681 5.34803 5.42078 5.46635 5.59911 5.75769 6.15164 6.21237 6.27782 6.51400 6.65927 6.76026 6.85058 7.18197 7.33805 7.42582 7.59914 7.77164 8.00550 8.04161 8.10307 8.27305 8.57091 8.94716 9.50836 10.96909 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.005291 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.956124 B = 5291.128489 C = 6490.519048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.221 3.779 4 H 0.040 0.960 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.887 3.113 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.672 5.672 14 C 0.086 3.914 15 C -0.015 4.015 16 C -0.088 4.088 17 C -0.105 4.105 18 C 0.091 3.909 19 F -0.129 7.129 20 C -0.099 4.099 21 C -0.001 4.001 22 N 0.026 4.974 23 O -0.203 6.203 24 O -0.078 6.078 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.322 0.678 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.905 9.983 -11.285 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.114 3.886 4 H 0.058 0.942 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.715 3.285 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.301 5.301 14 C -0.043 4.043 15 C -0.017 4.017 16 C -0.107 4.107 17 C -0.124 4.124 18 C 0.071 3.929 19 F -0.107 7.107 20 C -0.119 4.119 21 C -0.085 4.085 22 N 0.548 4.452 23 O -0.405 6.405 24 O -0.311 6.311 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.108 0.892 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.159 10.183 -11.486 15.672 hybrid contribution 1.785 0.087 -0.008 1.787 sum -1.374 10.270 -11.494 15.475 Atomic orbital electron populations 1.21702 0.98421 0.98199 1.01107 1.21476 0.92577 0.98813 1.01410 1.19127 0.92513 0.91334 0.85643 0.94205 1.21878 0.92804 1.38713 1.05505 0.92986 1.24913 0.97745 0.94970 0.95729 1.69889 1.34668 1.37950 1.09308 0.86635 0.86203 0.77785 0.77859 1.20094 1.21038 1.20970 1.61033 1.57122 1.02001 1.09941 1.21215 1.02088 0.91290 0.89679 1.20389 0.89781 0.93381 0.98144 1.21143 0.99822 0.96301 0.93406 1.21552 0.95664 0.98856 0.96339 1.17208 0.93536 0.99017 0.83116 1.91552 1.94965 1.82265 1.41940 1.20832 1.01391 0.96683 0.92991 1.20623 0.88534 1.04458 0.94860 1.43332 1.01212 0.99309 1.01333 1.94504 1.10195 1.63902 1.71881 1.94659 1.88031 1.45164 1.03243 0.96069 0.92730 0.94166 0.89160 0.95521 0.92852 0.86236 0.88156 0.93142 0.82575 0.83120 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 37.16 0.37 -2.54 16 2 C -0.10 -2.46 5.45 -26.73 -0.15 -2.61 16 3 C 0.22 5.19 1.96 -68.86 -0.13 5.05 16 4 H 0.04 1.04 7.91 -51.93 -0.41 0.63 16 5 C -0.55 -13.93 8.17 -34.44 -0.28 -14.21 16 6 H 0.05 1.29 7.78 -52.49 -0.41 0.88 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.49 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -13.13 4.59 -109.22 -0.50 -13.63 16 14 C 0.09 1.46 4.65 -4.98 -0.02 1.43 16 15 C -0.01 -0.21 5.34 -104.62 -0.56 -0.76 16 16 C -0.09 -0.93 9.66 -39.59 -0.38 -1.32 16 17 C -0.11 -0.96 10.03 -39.51 -0.40 -1.36 16 18 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 19 F -0.13 -1.35 17.27 2.25 0.04 -1.31 16 20 C -0.10 -1.19 9.54 -39.52 -0.38 -1.57 16 21 C 0.00 -0.02 6.84 -79.97 -0.55 -0.56 16 22 N 0.03 0.44 4.45 33.95 0.15 0.59 16 23 O -0.20 -3.53 18.46 -29.46 -0.54 -4.08 16 24 O -0.08 -1.47 13.86 -29.46 -0.41 -1.87 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 1.15 6.87 -51.93 -0.36 0.79 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.32 6.23 8.42 -39.29 -0.33 5.90 16 32 H 0.10 1.80 6.18 -51.93 -0.32 1.48 16 33 H 0.05 0.87 7.59 -51.93 -0.39 0.47 16 34 H 0.16 1.41 7.99 -52.49 -0.42 0.99 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.16 1.75 7.62 -52.48 -0.40 1.35 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -27.72 311.95 -7.99 -35.71 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.18 Total: 4.17 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.86 Total: -16.03 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.28 Total: -36.54 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.95 Total: -5.95 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.72 -7.99 -35.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.763 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds