Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 C 1.50697 * 109.46613 * 179.97438 * 3 2 1 5 5 N 1.31131 * 126.55168 * 90.25812 * 4 3 2 6 6 C 1.34492 * 105.61572 * 180.11980 * 5 4 3 7 7 C 1.50704 * 126.28601 * 179.90258 * 6 5 4 8 8 S 1.81399 * 109.47040 * 269.70690 * 7 6 5 9 9 C 1.81407 * 102.99928 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47012 * 180.02562 * 9 8 7 11 11 C 1.50702 * 115.54987 * 65.33166 * 10 9 8 12 12 H 1.07993 * 120.00062 * 265.65443 * 11 10 9 13 13 C 1.37874 * 119.99562 * 85.65724 * 11 10 9 14 14 N 1.31517 * 120.00437 * 353.69397 * 13 11 10 15 15 Si 1.86805 * 119.99704 * 173.69087 * 13 11 10 16 16 H 1.48494 * 109.47050 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46776 * 120.00094 * 15 13 11 18 18 H 1.48496 * 109.47326 * 239.99619 * 15 13 11 19 19 C 1.53003 * 117.49633 * 279.66527 * 10 9 8 20 20 C 1.52997 * 117.49950 * 211.00787 * 10 9 8 21 21 N 1.29945 * 107.42348 * 359.63360 * 6 5 4 22 22 O 1.21302 * 110.25294 * 0.23036 * 21 6 5 23 23 H 1.09003 * 109.47042 * 300.00113 * 1 2 3 24 24 H 1.08996 * 109.46833 * 60.00251 * 1 2 3 25 25 H 1.09001 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47042 * 239.99887 * 2 1 3 27 27 H 1.08996 * 109.46833 * 119.99749 * 2 1 3 28 28 H 1.08995 * 109.47076 * 60.00260 * 3 2 1 29 29 H 1.08997 * 109.46797 * 299.99946 * 3 2 1 30 30 H 1.09000 * 109.46939 * 149.70598 * 7 6 5 31 31 H 1.08996 * 109.47074 * 29.71095 * 7 6 5 32 32 H 1.08996 * 109.46926 * 299.99878 * 9 8 7 33 33 H 1.08997 * 109.46818 * 60.00412 * 9 8 7 34 34 H 0.97001 * 120.00310 * 174.98044 * 14 13 11 35 35 H 1.08996 * 117.49788 * 359.97438 * 19 10 9 36 36 H 1.08999 * 117.49712 * 145.02101 * 19 10 9 37 37 H 1.08995 * 117.50133 * 214.98228 * 20 10 9 38 38 H 1.09005 * 117.49770 * 359.96984 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3284 1.4470 -1.0524 6 6 5.5843 1.4421 -0.5713 7 6 6.8517 1.4424 -1.3867 8 16 7.3609 -0.2677 -1.7133 9 6 8.8772 -0.0629 -2.6880 10 6 9.4404 -1.4386 -3.0502 11 6 8.5823 -2.2712 -3.9675 12 1 7.8925 -2.9924 -3.5548 13 6 8.6780 -2.1122 -5.3337 14 7 9.4241 -1.1513 -5.8333 15 14 7.7480 -3.2619 -6.4752 16 1 6.9865 -4.2499 -5.6696 17 1 6.8064 -2.4744 -7.3111 18 1 8.7112 -3.9746 -7.3523 19 6 10.2515 -2.1736 -1.9811 20 6 10.9582 -1.5648 -3.1948 21 7 5.5042 1.4429 0.7256 22 8 4.3424 1.4432 1.0746 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.6385 1.9568 -0.8349 31 1 6.6756 1.9560 -2.3318 32 1 8.6508 0.4884 -3.6006 33 1 9.6132 0.4889 -2.1032 34 1 9.5499 -1.0840 -6.7928 35 1 10.3842 -1.6769 -1.0201 36 1 10.1648 -3.2594 -1.9417 37 1 11.3363 -2.2503 -3.9532 38 1 11.5556 -0.6676 -3.0324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596334333.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 75.254656 kcal Electronic energy + Delta-G solvation = -19115.408153 eV Core-core repulsion = 16087.924006 eV Total energy + Delta-G solvation = -3027.484146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.56968 -36.59268 -36.30415 -35.62544 -32.51477 -31.93522 -29.33643 -27.91177 -27.60827 -25.31558 -23.70075 -22.46826 -21.19933 -21.12479 -19.23102 -18.10914 -17.49981 -16.26105 -15.69973 -15.38365 -15.19002 -14.62736 -14.22067 -13.85361 -13.76332 -13.47099 -13.36753 -12.91591 -12.79105 -12.22787 -12.06964 -11.85271 -11.79647 -11.61664 -11.20891 -11.07447 -10.98914 -10.97337 -10.87254 -10.46913 -10.23931 -9.91865 -9.67583 -9.28369 -8.82857 -8.44508 -8.04186 -6.88821 -6.04832 -4.10041 1.10174 1.78535 2.75191 2.79645 3.30161 3.33401 3.38936 3.44263 3.62426 4.03597 4.43010 4.57391 4.64640 4.69381 5.07046 5.16909 5.24332 5.27365 5.33834 5.37400 5.39758 5.55356 5.71782 5.78733 5.81862 5.93234 5.94625 6.04617 6.18234 6.37145 6.50458 6.71886 6.78733 7.05086 7.37820 7.47154 7.89010 8.21154 8.38696 8.92258 9.56548 11.04347 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.004106 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.964586 B = 6818.191935 C = 7888.286965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.024 4.024 4 C 0.172 3.828 5 N -0.466 5.466 6 C 0.201 3.799 7 C -0.022 4.022 8 S -0.212 6.212 9 C -0.028 4.028 10 C 0.054 3.946 11 C -0.485 4.485 12 H 0.063 0.937 13 C 0.072 3.928 14 N -0.881 5.881 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.205 4.205 20 C -0.146 4.146 21 N -0.375 5.375 22 O 0.077 5.923 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.103 6.724 11.004 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.063 4.063 4 C -0.049 4.049 5 N -0.199 5.199 6 C -0.072 4.072 7 C -0.171 4.171 8 S 0.015 5.985 9 C -0.176 4.176 10 C 0.052 3.948 11 C -0.522 4.522 12 H 0.081 0.919 13 C -0.130 4.130 14 N -0.518 5.518 15 Si 0.716 3.284 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.243 4.243 20 C -0.186 4.186 21 N -0.083 5.083 22 O 0.017 5.983 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.801 5.969 11.230 18.045 hybrid contribution 0.202 0.613 -1.153 1.322 sum -12.599 6.582 10.077 17.424 Atomic orbital electron populations 1.21741 0.94376 1.02462 1.02147 1.21569 0.96694 0.94277 1.03813 1.20284 0.80106 1.00112 1.05773 1.28834 0.98622 0.96573 0.80828 1.71906 1.00045 1.19313 1.28663 1.24879 0.94284 1.00268 0.87809 1.21503 0.91998 1.02620 1.01030 1.87196 1.36733 1.03915 1.70654 1.23193 0.92536 1.02608 0.99289 1.18438 0.90424 0.90269 0.95640 1.20426 1.21832 1.20132 0.89833 0.91933 1.24937 0.95310 0.94739 0.98054 1.70015 1.39329 1.30132 1.12354 0.86589 0.79857 0.81097 0.80872 1.19610 1.20975 1.21033 1.23035 1.09196 0.99297 0.92742 1.22578 0.96480 1.00830 0.98691 1.74648 0.97111 1.21008 1.15514 1.85280 1.11455 1.65736 1.35793 0.92362 0.92232 0.92021 0.90581 0.91078 0.88143 0.87261 0.88286 0.87403 0.89446 0.93097 0.93106 0.91370 0.90217 0.89704 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.17 2.16 7.77 -13.06 -0.10 2.06 16 5 N -0.47 -7.47 11.55 -9.87 -0.11 -7.58 16 6 C 0.20 3.42 7.48 -156.37 -1.17 2.25 16 7 C -0.02 -0.39 6.57 36.01 0.24 -0.15 16 8 S -0.21 -4.45 21.41 -107.50 -2.30 -6.75 16 9 C -0.03 -0.62 5.80 37.16 0.22 -0.41 16 10 C 0.05 1.33 1.34 -155.66 -0.21 1.12 16 11 C -0.48 -13.21 8.49 -34.44 -0.29 -13.50 16 12 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 13 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 14 N -0.88 -24.59 12.90 55.43 0.71 -23.87 16 15 Si 0.89 21.33 29.55 -169.99 -5.02 16.30 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C -0.21 -4.52 9.96 -26.69 -0.27 -4.79 16 20 C -0.15 -3.37 9.40 -26.70 -0.25 -3.62 16 21 N -0.38 -6.21 12.16 30.90 0.38 -5.83 16 22 O 0.08 1.08 11.31 18.10 0.20 1.28 16 23 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 33 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 34 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -30.51 342.27 -8.76 -39.26 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.88 Total: -0.90 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.89 Total: -17.07 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.98 Total: -37.29 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.20 Total: 1.28 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.30 Total: -6.75 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.51 -8.76 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596334333.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.515 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds