Wall clock time and date at job start Tue Mar 31 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47441 * 2 1 4 4 C 1.50704 * 109.46880 * 119.99905 * 2 1 3 5 5 N 1.29946 * 126.28801 * 300.01977 * 4 2 1 6 6 O 1.21292 * 110.25405 * 179.68860 * 5 4 2 7 7 C 1.33645 * 109.80863 * 0.47039 * 6 5 4 8 8 C 1.50701 * 126.54997 * 179.80631 * 7 6 5 9 9 S 1.81403 * 109.46979 * 269.68312 * 8 7 6 10 10 C 1.81398 * 103.00179 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47321 * 180.02562 * 10 9 8 12 12 C 1.50698 * 115.54961 * 65.33102 * 11 10 9 13 13 H 1.08001 * 120.00069 * 265.65247 * 12 11 10 14 14 C 1.37875 * 120.00162 * 85.65107 * 12 11 10 15 15 N 1.31513 * 119.99999 * 353.68778 * 14 12 11 16 16 Si 1.86800 * 120.00236 * 173.68886 * 14 12 11 17 17 H 1.48501 * 109.47365 * 90.00050 * 16 14 12 18 18 H 1.48497 * 109.46985 * 210.00310 * 16 14 12 19 19 H 1.48508 * 109.46810 * 329.99885 * 16 14 12 20 20 C 1.52998 * 117.49640 * 279.66069 * 11 10 9 21 21 C 1.52997 * 117.49974 * 211.00416 * 11 10 9 22 22 N 1.31123 * 106.89865 * 359.53794 * 7 6 5 23 23 H 1.09000 * 109.47218 * 300.00231 * 1 2 3 24 24 H 1.08996 * 109.46686 * 60.00367 * 1 2 3 25 25 H 1.08998 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47218 * 239.99769 * 2 1 3 27 27 H 1.09003 * 109.47078 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46657 * 299.99912 * 3 2 1 29 29 H 1.08993 * 109.47396 * 59.99509 * 3 2 1 30 30 H 1.09000 * 109.47083 * 149.68788 * 8 7 6 31 31 H 1.08996 * 109.47179 * 29.68311 * 8 7 6 32 32 H 1.09000 * 109.47118 * 59.99838 * 10 9 8 33 33 H 1.09006 * 109.47011 * 300.00292 * 10 9 8 34 34 H 0.96997 * 120.00385 * 175.01444 * 15 14 12 35 35 H 1.08997 * 117.50098 * 0.02562 * 20 11 10 36 36 H 1.09001 * 117.49700 * 145.02015 * 20 11 10 37 37 H 1.09002 * 117.49963 * 214.98021 * 21 11 10 38 38 H 1.09005 * 117.50027 * 359.97148 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3360 -1.1512 3.2216 7 6 2.9990 -2.0783 2.5236 8 6 3.8057 -3.2196 3.0873 9 16 5.5259 -2.6901 3.3140 10 6 6.3240 -4.1734 3.9873 11 6 7.8056 -3.8858 4.2387 12 6 8.0970 -2.8575 5.3010 13 1 8.2499 -1.8245 5.0252 14 6 8.1684 -3.2352 6.6250 15 7 7.8609 -4.4649 6.9755 16 14 8.7020 -2.0004 7.9212 17 1 7.5097 -1.2878 8.4466 18 1 9.3828 -2.7123 9.0324 19 1 9.6377 -1.0195 7.3148 20 6 8.7509 -3.9479 3.0373 21 6 8.7856 -5.0521 4.0967 22 7 2.8087 -1.8084 1.2547 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.7731 -4.0630 2.3976 31 1 3.3883 -3.5197 4.0483 32 1 6.2283 -4.9927 3.2748 33 1 5.8437 -4.4502 4.9259 34 1 7.9800 -4.7515 7.8945 35 1 8.3173 -4.1932 2.0678 36 1 9.5839 -3.2452 3.0154 37 1 9.6413 -5.0755 4.7715 38 1 8.3748 -6.0245 3.8247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596336399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:08 Heat of formation + Delta-G solvation = 77.883471 kcal Electronic energy + Delta-G solvation = -19244.147069 eV Core-core repulsion = 16216.776916 eV Total energy + Delta-G solvation = -3027.370152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.53135 -36.94452 -36.63444 -34.91706 -32.56760 -31.97461 -28.94527 -27.65756 -27.47883 -25.35143 -24.62147 -23.20382 -21.16179 -20.31438 -19.25769 -18.10446 -17.56288 -16.36551 -15.46050 -15.21481 -14.98540 -14.66358 -14.34374 -14.00362 -13.67547 -13.62182 -13.36739 -12.95981 -12.52369 -12.34689 -11.95310 -11.86553 -11.80583 -11.56600 -11.33042 -11.19758 -11.01244 -10.92957 -10.92380 -10.49924 -10.29494 -9.95797 -9.74830 -9.35812 -8.87463 -8.47533 -8.09365 -7.01336 -6.08700 -4.14272 0.96284 1.95108 2.51994 2.82512 3.24567 3.29915 3.36925 3.41189 3.52225 4.00333 4.40062 4.62988 4.78002 4.78986 5.04813 5.15437 5.20489 5.32466 5.32663 5.38982 5.51219 5.54527 5.60784 5.80533 5.87408 5.89821 5.93677 6.07857 6.12666 6.32117 6.45501 6.67301 6.74656 7.01710 7.33071 7.43538 7.85234 8.20108 8.34170 8.88057 9.52789 11.00293 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.003733 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.195233 B = 7498.535964 C = 7959.743617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.146 4.146 4 C 0.173 3.827 5 N -0.382 5.382 6 O 0.083 5.917 7 C 0.214 3.786 8 C -0.027 4.027 9 S -0.203 6.203 10 C -0.029 4.029 11 C 0.053 3.947 12 C -0.487 4.487 13 H 0.062 0.938 14 C 0.074 3.926 15 N -0.881 5.881 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.205 4.205 21 C -0.145 4.145 22 N -0.474 5.474 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 3.590 -11.070 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.204 4.204 4 C -0.100 4.100 5 N -0.090 5.090 6 O 0.025 5.975 7 C -0.007 4.007 8 C -0.176 4.176 9 S 0.024 5.976 10 C -0.177 4.177 11 C 0.051 3.949 12 C -0.525 4.525 13 H 0.080 0.920 14 C -0.130 4.130 15 N -0.518 5.518 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.242 4.242 21 C -0.185 4.185 22 N -0.209 5.209 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.941 5.106 -11.322 17.229 hybrid contribution -0.075 -0.864 1.262 1.531 sum -12.016 4.242 -10.060 16.235 Atomic orbital electron populations 1.21843 0.93017 1.02478 1.02877 1.19539 0.96231 0.95449 0.91058 1.21852 1.01780 0.93918 1.02828 1.25798 0.96805 0.92845 0.94599 1.74553 1.18115 1.13494 1.02837 1.85323 1.47602 1.29533 1.35075 1.27729 0.93854 0.93343 0.85726 1.21761 0.97764 0.93185 1.04842 1.87402 0.99576 1.26192 1.84440 1.23250 1.00649 0.92439 1.01350 1.18427 0.84491 0.97602 0.94347 1.20385 1.48821 0.93599 0.89703 0.91960 1.24929 0.94456 0.95378 0.98196 1.69994 1.46351 1.17111 1.18311 0.86662 0.78984 0.81530 0.81286 1.20453 1.21252 1.19830 1.23042 1.04378 1.03534 0.93274 1.22583 1.03119 0.91979 1.00801 1.71915 1.16882 1.14374 1.17714 0.91873 0.91135 0.92350 0.88060 0.92057 0.91148 0.91852 0.86337 0.86681 0.92764 0.89231 0.92994 0.91267 0.90211 0.89693 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.38 9.18 37.16 0.34 -1.03 16 4 C 0.17 2.48 6.72 -156.37 -1.05 1.43 16 5 N -0.38 -5.97 12.16 30.90 0.38 -5.59 16 6 O 0.08 1.34 11.31 18.10 0.20 1.54 16 7 C 0.21 3.31 7.77 -13.06 -0.10 3.21 16 8 C -0.03 -0.38 6.57 36.01 0.24 -0.15 16 9 S -0.20 -3.86 21.41 -107.50 -2.30 -6.16 16 10 C -0.03 -0.59 5.80 37.16 0.22 -0.37 16 11 C 0.05 1.24 1.34 -155.66 -0.21 1.03 16 12 C -0.49 -12.80 8.49 -34.44 -0.29 -13.09 16 13 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 15 N -0.88 -23.78 12.90 55.43 0.71 -23.06 16 16 Si 0.89 20.79 29.55 -169.99 -5.02 15.76 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.20 -4.31 9.96 -26.70 -0.27 -4.57 16 21 C -0.14 -3.20 9.40 -26.70 -0.25 -3.45 16 22 N -0.47 -7.45 11.55 -9.87 -0.11 -7.56 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.12 1.48 8.14 -51.92 -0.42 1.06 16 31 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.05 0.99 8.09 -51.92 -0.42 0.57 16 33 H 0.09 1.98 8.14 -51.92 -0.42 1.55 16 34 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -28.46 341.59 -8.32 -36.79 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.88 Total: -0.47 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.44 Total: -16.39 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.98 Total: -36.21 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.30 Total: -6.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.46 -8.32 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596336399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.671 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds