Wall clock time and date at job start Tue Mar 31 2020 05:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47441 * 2 1 4 4 C 1.50704 * 109.46880 * 119.99905 * 2 1 3 5 5 N 1.29946 * 126.28801 * 300.01977 * 4 2 1 6 6 O 1.21292 * 110.25405 * 179.68860 * 5 4 2 7 7 C 1.33645 * 109.80863 * 0.47039 * 6 5 4 8 8 C 1.50701 * 126.54997 * 179.80631 * 7 6 5 9 9 S 1.81403 * 109.46979 * 269.68312 * 8 7 6 10 10 C 1.81398 * 103.00179 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47321 * 180.02562 * 10 9 8 12 12 C 1.50698 * 115.54961 * 65.33102 * 11 10 9 13 13 H 1.08001 * 120.00069 * 265.65247 * 12 11 10 14 14 C 1.37875 * 120.00162 * 85.65107 * 12 11 10 15 15 N 1.31513 * 119.99999 * 353.68778 * 14 12 11 16 16 Si 1.86800 * 120.00236 * 173.68886 * 14 12 11 17 17 H 1.48501 * 109.47365 * 90.00050 * 16 14 12 18 18 H 1.48497 * 109.46985 * 210.00310 * 16 14 12 19 19 H 1.48508 * 109.46810 * 329.99885 * 16 14 12 20 20 C 1.52998 * 117.49640 * 279.66069 * 11 10 9 21 21 C 1.52997 * 117.49974 * 211.00416 * 11 10 9 22 22 N 1.31123 * 106.89865 * 359.53794 * 7 6 5 23 23 H 1.09000 * 109.47218 * 300.00231 * 1 2 3 24 24 H 1.08996 * 109.46686 * 60.00367 * 1 2 3 25 25 H 1.08998 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47218 * 239.99769 * 2 1 3 27 27 H 1.09003 * 109.47078 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46657 * 299.99912 * 3 2 1 29 29 H 1.08993 * 109.47396 * 59.99509 * 3 2 1 30 30 H 1.09000 * 109.47083 * 149.68788 * 8 7 6 31 31 H 1.08996 * 109.47179 * 29.68311 * 8 7 6 32 32 H 1.09000 * 109.47118 * 59.99838 * 10 9 8 33 33 H 1.09006 * 109.47011 * 300.00292 * 10 9 8 34 34 H 0.96997 * 120.00385 * 175.01444 * 15 14 12 35 35 H 1.08997 * 117.50098 * 0.02562 * 20 11 10 36 36 H 1.09001 * 117.49700 * 145.02015 * 20 11 10 37 37 H 1.09002 * 117.49963 * 214.98021 * 21 11 10 38 38 H 1.09005 * 117.50027 * 359.97148 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3360 -1.1512 3.2216 7 6 2.9990 -2.0783 2.5236 8 6 3.8057 -3.2196 3.0873 9 16 5.5259 -2.6901 3.3140 10 6 6.3240 -4.1734 3.9873 11 6 7.8056 -3.8858 4.2387 12 6 8.0970 -2.8575 5.3010 13 1 8.2499 -1.8245 5.0252 14 6 8.1684 -3.2352 6.6250 15 7 7.8609 -4.4649 6.9755 16 14 8.7020 -2.0004 7.9212 17 1 7.5097 -1.2878 8.4466 18 1 9.3828 -2.7123 9.0324 19 1 9.6377 -1.0195 7.3148 20 6 8.7509 -3.9479 3.0373 21 6 8.7856 -5.0521 4.0967 22 7 2.8087 -1.8084 1.2547 23 1 -0.3634 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.7731 -4.0630 2.3976 31 1 3.3883 -3.5197 4.0483 32 1 6.2283 -4.9927 3.2748 33 1 5.8437 -4.4502 4.9259 34 1 7.9800 -4.7515 7.8945 35 1 8.3173 -4.1932 2.0678 36 1 9.5839 -3.2452 3.0154 37 1 9.6413 -5.0755 4.7715 38 1 8.3748 -6.0245 3.8247 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596336399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:08 Heat of formation + Delta-G solvation = 62.420881 kcal Electronic energy + Delta-G solvation = -19244.817577 eV Core-core repulsion = 16216.776916 eV Total energy + Delta-G solvation = -3028.040661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.70413 -38.39868 -37.93230 -35.98838 -33.97075 -33.64766 -30.17979 -29.27229 -28.17884 -27.32775 -25.66397 -24.32216 -22.88826 -21.43622 -20.94241 -19.30412 -18.73408 -18.12860 -16.99624 -16.60226 -16.15770 -16.10340 -15.69360 -15.25826 -15.06238 -14.75375 -14.53917 -14.45142 -13.79340 -13.37980 -13.28908 -13.22219 -12.97786 -12.81633 -12.71463 -12.64625 -12.36481 -12.32380 -12.18155 -11.98433 -11.89923 -11.53453 -11.31478 -10.78805 -10.66527 -10.42108 -9.84734 -8.51676 -8.09650 -6.18799 -0.29953 0.72421 1.30416 1.41653 1.45134 1.52906 1.62384 1.80401 2.45640 2.47565 2.94754 3.19780 3.57264 3.67599 3.91293 4.01871 4.02399 4.18417 4.22354 4.39357 4.46223 4.64291 4.67046 4.68011 4.69939 4.71424 4.82499 4.88992 4.97583 5.01344 5.04623 5.21160 5.26364 5.27944 5.61277 5.66881 5.80323 6.40885 6.84772 7.02439 7.49413 8.98231 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.003733 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.195233 B = 7498.535964 C = 7959.743617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.174 3.826 5 N -0.398 5.398 6 O 0.068 5.932 7 C 0.210 3.790 8 C -0.009 4.009 9 S -0.245 6.245 10 C -0.015 4.015 11 C 0.026 3.974 12 C -0.499 4.499 13 H 0.043 0.957 14 C 0.035 3.965 15 N -0.901 5.901 16 Si 0.937 3.063 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.275 1.275 20 C -0.186 4.186 21 C -0.146 4.146 22 N -0.486 5.486 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.113 0.887 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.260 0.740 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 3.643 -12.545 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.099 4.099 5 N -0.108 5.108 6 O 0.013 5.987 7 C -0.010 4.010 8 C -0.158 4.158 9 S -0.019 6.019 10 C -0.163 4.163 11 C 0.025 3.975 12 C -0.536 4.536 13 H 0.062 0.938 14 C -0.166 4.166 15 N -0.539 5.539 16 Si 0.763 3.237 17 H -0.205 1.205 18 H -0.207 1.207 19 H -0.200 1.200 20 C -0.223 4.223 21 C -0.186 4.186 22 N -0.222 5.222 23 H 0.071 0.929 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.131 0.869 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.021 5.153 -12.781 18.959 hybrid contribution 0.219 -0.827 1.645 1.854 sum -12.801 4.326 -11.136 17.510 Atomic orbital electron populations 1.21823 0.91398 1.02579 1.03802 1.19847 0.97518 0.95656 0.89680 1.21844 1.00883 0.93414 1.03830 1.26562 0.95657 0.92278 0.95403 1.74555 1.18970 1.13855 1.03404 1.85303 1.48043 1.29842 1.35524 1.27900 0.93888 0.93398 0.85853 1.21788 0.94026 0.93300 1.06658 1.87441 1.03559 1.26644 1.84221 1.22937 0.98747 0.93518 1.01091 1.18529 0.86441 0.97611 0.94955 1.20546 1.48633 0.93540 0.90927 0.93828 1.25459 0.94796 0.96685 0.99627 1.70055 1.47198 1.18091 1.18508 0.85901 0.78467 0.79842 0.79480 1.20504 1.20735 1.19993 1.23019 1.03281 1.02361 0.93670 1.22515 1.02181 0.92919 1.00934 1.71939 1.17323 1.15069 1.17823 0.92865 0.88274 0.92663 0.86927 0.93409 0.88103 0.92895 0.83776 0.84785 0.90285 0.91323 0.93066 0.88828 0.90895 0.92000 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.18 71.98 0.66 -1.41 16 2 C -0.01 -0.13 3.39 -11.54 -0.04 -0.17 16 3 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 4 C 0.17 4.81 6.72 138.46 0.93 5.74 16 5 N -0.40 -12.20 12.16 -60.34 -0.73 -12.93 16 6 O 0.07 2.16 11.31 74.82 0.85 3.01 16 7 C 0.21 6.27 7.77 88.38 0.69 6.95 16 8 C -0.01 -0.24 6.57 71.24 0.47 0.22 16 9 S -0.25 -9.12 21.41 -56.49 -1.21 -10.33 16 10 C -0.01 -0.59 5.80 71.98 0.42 -0.17 16 11 C 0.03 1.21 1.34 -52.93 -0.07 1.14 16 12 C -0.50 -26.44 8.49 25.60 0.22 -26.22 16 13 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 14 C 0.04 1.87 5.39 84.65 0.46 2.32 16 15 N -0.90 -48.85 12.90 21.45 0.28 -48.58 16 16 Si 0.94 42.98 29.55 68.60 2.03 45.01 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.19 -7.59 9.96 30.62 0.30 -7.29 16 21 C -0.15 -6.34 9.40 30.62 0.29 -6.05 16 22 N -0.49 -14.63 11.55 -303.21 -3.50 -18.13 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.13 3.13 8.14 -2.39 -0.02 3.12 16 32 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.26 13.60 8.32 -92.71 -0.77 12.82 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -60.94 341.59 3.72 -57.22 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.04 Total: 11.42 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 4.98 Total: -26.68 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -3.96 Total: -79.64 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.85 Total: 3.01 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.21 Total: -10.33 kcal Total: -60.94 3.72 -57.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596336399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.645 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds