Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47437 * 120.00696 * 2 1 3 5 5 N 1.31130 * 126.55582 * 120.01539 * 4 2 1 6 6 C 1.34496 * 105.62030 * 179.97438 * 5 4 2 7 7 C 1.50690 * 126.28980 * 179.97438 * 6 5 4 8 8 S 1.81402 * 109.47285 * 270.04540 * 7 6 5 9 9 C 1.81398 * 103.00300 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47156 * 179.97438 * 9 8 7 11 11 C 1.50707 * 115.54588 * 65.33414 * 10 9 8 12 12 H 1.07995 * 120.00182 * 265.64849 * 11 10 9 13 13 C 1.37879 * 119.99915 * 85.65606 * 11 10 9 14 14 N 1.31515 * 119.99811 * 353.69285 * 13 11 10 15 15 Si 1.86802 * 119.99895 * 173.68706 * 13 11 10 16 16 H 1.48500 * 109.47310 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46700 * 119.99756 * 15 13 11 18 18 H 1.48495 * 109.47658 * 239.99830 * 15 13 11 19 19 C 1.52995 * 117.50168 * 279.66469 * 10 9 8 20 20 C 1.52995 * 117.50177 * 211.00206 * 10 9 8 21 21 N 1.29951 * 107.42136 * 0.02562 * 6 5 4 22 22 O 1.21301 * 110.25059 * 359.97438 * 21 6 5 23 23 H 1.09001 * 109.47270 * 299.99483 * 1 2 3 24 24 H 1.09002 * 109.47591 * 59.99768 * 1 2 3 25 25 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46630 * 240.00500 * 2 1 3 27 27 H 1.08994 * 109.46969 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47169 * 300.00598 * 3 2 1 29 29 H 1.09006 * 109.46446 * 60.00569 * 3 2 1 30 30 H 1.09001 * 109.47465 * 30.04492 * 7 6 5 31 31 H 1.08998 * 109.47115 * 150.05018 * 7 6 5 32 32 H 1.09004 * 109.46701 * 300.00119 * 9 8 7 33 33 H 1.09004 * 109.46977 * 60.00077 * 9 8 7 34 34 H 0.97008 * 119.99525 * 174.97996 * 14 13 11 35 35 H 1.09000 * 117.50134 * 359.97438 * 19 10 9 36 36 H 1.09001 * 117.50118 * 145.01872 * 19 10 9 37 37 H 1.08999 * 117.50003 * 214.98707 * 20 10 9 38 38 H 1.09004 * 117.49839 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 2.7895 -1.7807 1.2597 6 6 2.9822 -2.0524 2.5628 7 6 3.7890 -3.1936 3.1261 8 16 2.7165 -4.6391 3.3516 9 6 3.8483 -5.8859 4.0262 10 6 3.0833 -7.1869 4.2766 11 6 2.5495 -7.8741 3.0461 12 1 1.5362 -7.6899 2.7214 13 6 3.3550 -8.7382 2.3350 14 7 4.6238 -8.8685 2.6556 15 14 2.6439 -9.7239 0.9164 16 1 1.2036 -9.3980 0.7600 17 1 3.3669 -9.3823 -0.3350 18 1 2.7962 -11.1743 1.1959 19 6 2.2498 -7.2814 5.5561 20 6 3.5543 -8.0724 5.4320 21 7 2.3437 -1.1506 3.2467 22 8 1.7916 -0.3702 2.5001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 4.5955 -3.4436 2.4367 31 1 4.2106 -2.9006 4.0876 32 1 4.6535 -6.0685 3.3146 33 1 4.2682 -5.5252 4.9653 34 1 5.1728 -9.5287 2.2040 35 1 2.2467 -6.4167 6.2198 36 1 1.3155 -7.8408 5.5081 37 1 3.4780 -9.1519 5.3023 38 1 4.4096 -7.7282 6.0135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596339460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = 77.884800 kcal Electronic energy + Delta-G solvation = -19264.023627 eV Core-core repulsion = 16236.653532 eV Total energy + Delta-G solvation = -3027.370095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.57147 -36.59223 -36.51922 -35.85114 -31.97956 -31.93285 -29.16169 -27.61469 -27.60200 -25.31352 -24.39286 -23.32743 -21.12588 -20.52795 -19.19579 -18.12172 -17.36618 -16.25990 -16.11634 -15.28471 -14.78881 -14.62533 -14.17007 -13.82973 -13.69012 -13.51581 -13.34536 -12.82157 -12.61178 -12.48211 -12.07767 -11.85063 -11.80745 -11.62720 -11.39547 -11.22271 -10.99075 -10.96005 -10.87135 -10.46707 -10.24247 -9.92995 -9.67414 -9.28226 -8.82694 -8.44339 -8.04062 -6.88677 -6.04692 -4.09837 1.11066 1.79239 2.75158 2.78774 3.30349 3.33400 3.39115 3.44481 3.58497 4.02128 4.43210 4.50091 4.59545 4.66662 5.06204 5.21821 5.24510 5.29849 5.37085 5.38837 5.42323 5.47543 5.61616 5.76153 5.80840 5.85229 5.93319 6.05590 6.18390 6.37248 6.50603 6.71990 6.78859 7.05179 7.37932 7.47257 7.89198 8.21676 8.38847 8.92430 9.56718 11.04492 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.021054 B = 0.003960 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.605263 B = 7068.877683 C = 7853.368006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.001 3.999 3 C -0.150 4.150 4 C 0.177 3.823 5 N -0.467 5.467 6 C 0.200 3.800 7 C -0.022 4.022 8 S -0.212 6.212 9 C -0.028 4.028 10 C 0.054 3.946 11 C -0.485 4.485 12 H 0.063 0.937 13 C 0.072 3.928 14 N -0.881 5.881 15 Si 0.888 3.112 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.205 4.205 20 C -0.146 4.146 21 N -0.375 5.375 22 O 0.079 5.921 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 18.150 -3.715 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 C -0.208 4.208 4 C -0.044 4.044 5 N -0.200 5.200 6 C -0.073 4.073 7 C -0.171 4.171 8 S 0.015 5.985 9 C -0.176 4.176 10 C 0.052 3.948 11 C -0.522 4.522 12 H 0.081 0.919 13 C -0.131 4.131 14 N -0.518 5.518 15 Si 0.716 3.284 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.243 4.243 20 C -0.186 4.186 21 N -0.083 5.083 22 O 0.020 5.980 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.139 17.707 -3.333 18.487 hybrid contribution 1.119 -0.555 -0.522 1.353 sum -3.020 17.152 -3.854 17.837 Atomic orbital electron populations 1.21921 0.92138 1.03478 1.03462 1.19832 0.97079 0.95682 0.89311 1.21910 1.01888 0.93502 1.03520 1.28826 0.94362 0.92390 0.88848 1.71920 1.16571 1.12585 1.18888 1.24877 0.99310 0.97414 0.85689 1.21501 0.99188 0.92911 1.03539 1.87198 1.19063 1.05659 1.86588 1.23195 0.98780 0.95309 1.00346 1.18437 0.96591 0.90623 0.89129 1.20429 0.98417 1.25427 1.07959 0.91934 1.24939 0.94432 0.96855 0.96826 1.70020 1.05151 1.33854 1.42798 0.86587 0.79582 0.79761 0.82473 1.19603 1.20976 1.21036 1.23034 0.95554 1.02090 1.03584 1.22578 0.94875 0.98257 1.02867 1.74654 1.12200 1.04372 1.17055 1.85255 1.54313 1.42979 1.15502 0.91456 0.90481 0.91546 0.86584 0.91867 0.90475 0.91474 0.87405 0.88277 0.89441 0.93099 0.93112 0.91371 0.90216 0.89703 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 2 C 0.00 0.01 3.39 -91.78 -0.31 -0.30 16 3 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16 4 C 0.18 2.28 7.02 -13.06 -0.09 2.19 16 5 N -0.47 -7.62 11.55 -9.87 -0.11 -7.73 16 6 C 0.20 3.45 7.48 -156.37 -1.17 2.28 16 7 C -0.02 -0.39 6.57 36.00 0.24 -0.15 16 8 S -0.21 -4.47 21.41 -107.50 -2.30 -6.77 16 9 C -0.03 -0.62 5.80 37.16 0.22 -0.41 16 10 C 0.05 1.33 1.34 -155.66 -0.21 1.12 16 11 C -0.48 -13.24 8.49 -34.44 -0.29 -13.53 16 12 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 13 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 14 N -0.88 -24.62 12.90 55.43 0.71 -23.90 16 15 Si 0.89 21.36 29.55 -169.99 -5.02 16.34 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.21 -4.53 9.96 -26.70 -0.27 -4.80 16 20 C -0.15 -3.37 9.40 -26.70 -0.25 -3.62 16 21 N -0.38 -6.26 12.16 30.90 0.38 -5.88 16 22 O 0.08 1.12 11.31 18.09 0.20 1.33 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 1.78 8.14 -51.92 -0.42 1.35 16 31 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 32 H 0.09 2.11 8.14 -51.92 -0.42 1.68 16 33 H 0.05 1.03 8.09 -51.92 -0.42 0.61 16 34 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 37 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -30.56 341.59 -8.43 -38.99 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.88 Total: -0.92 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -1.55 Total: -16.59 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.98 Total: -37.52 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -4.47 SS G_CDS: -2.30 Total: -6.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.56 -8.43 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596339460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.873 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds