Wall clock time and date at job start Tue Mar 31 2020 05:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47012 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47153 * 60.02100 * 6 5 4 9 9 C 1.50697 * 109.47042 * 300.02250 * 6 5 4 10 10 O 1.21290 * 120.00242 * 0.02562 * 9 6 5 11 11 N 1.34771 * 120.00245 * 179.97438 * 9 6 5 12 12 C 1.46504 * 120.00305 * 180.02562 * 11 9 6 13 13 C 1.52998 * 109.47147 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47029 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47314 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99866 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00332 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99994 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47596 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47273 * 120.00213 * 19 17 15 22 22 H 1.48498 * 109.47134 * 239.99906 * 19 17 15 23 23 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 25 25 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 26 26 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 27 27 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 28 28 H 1.09000 * 109.47285 * 59.99826 * 8 6 5 29 29 H 1.09002 * 109.47537 * 180.02562 * 8 6 5 30 30 H 1.09005 * 109.47377 * 300.00217 * 8 6 5 31 31 H 0.97002 * 119.99736 * 0.02562 * 11 9 6 32 32 H 1.09002 * 109.46954 * 299.99660 * 12 11 9 33 33 H 1.08996 * 109.47510 * 59.99958 * 12 11 9 34 34 H 1.08992 * 109.47342 * 299.99745 * 13 12 11 35 35 H 1.09005 * 109.47171 * 60.00128 * 13 12 11 36 36 H 1.09000 * 109.47343 * 300.00169 * 14 13 12 37 37 H 1.08996 * 109.47378 * 60.00012 * 14 13 12 38 38 H 0.96992 * 120.00063 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9388 -3.0710 -0.0008 8 6 5.3627 -2.0463 1.2495 9 6 5.3504 -2.0462 -1.2302 10 8 5.1889 -1.1469 -2.0279 11 7 6.3057 -2.9726 -1.4434 12 6 7.1487 -2.8938 -2.6390 13 6 8.1432 -4.0565 -2.6394 14 6 9.0232 -3.9745 -3.8883 15 6 10.0023 -5.1201 -3.8890 16 1 9.9977 -5.8349 -3.0794 17 6 10.9047 -5.2551 -4.9227 18 7 10.9107 -4.3844 -5.9083 19 14 12.1188 -6.6747 -4.9232 20 1 11.9083 -7.5066 -3.7112 21 1 11.9093 -7.5049 -6.1365 22 1 13.5045 -6.1409 -4.9219 23 7 2.2200 -1.1083 -0.0010 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8390 2.1309 0.0037 28 1 4.7358 -2.1047 2.1392 29 1 6.0716 -2.8744 1.2491 30 1 5.9075 -1.1022 1.2502 31 1 6.4351 -3.6916 -0.8053 32 1 6.5227 -2.9514 -3.5294 33 1 7.6932 -1.9495 -2.6381 34 1 8.7692 -3.9994 -1.7490 35 1 7.5983 -5.0006 -2.6406 36 1 8.3968 -4.0318 -4.7785 37 1 9.5680 -3.0305 -3.8876 38 1 11.5452 -4.4795 -6.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:54 Heat of formation + Delta-G solvation = -17.511498 kcal Electronic energy + Delta-G solvation = -18951.594125 eV Core-core repulsion = 15920.087336 eV Total energy + Delta-G solvation = -3031.506789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33463 -39.41032 -35.54002 -34.55370 -33.31792 -31.57401 -30.82758 -27.79867 -26.86779 -25.69769 -23.77457 -22.37101 -20.75882 -19.99590 -19.81363 -17.82115 -16.87667 -16.51505 -16.02139 -15.58011 -15.04509 -14.90785 -14.47272 -14.28402 -13.78110 -13.70265 -13.27039 -13.00347 -12.77624 -12.48393 -12.32410 -12.23029 -11.93011 -11.82240 -11.66811 -11.33632 -10.93861 -10.76801 -10.59334 -10.01350 -9.90423 -9.78116 -9.52368 -9.30325 -9.12213 -8.86622 -8.76442 -8.39530 -6.03903 -4.07054 0.58009 1.29866 1.70938 2.58112 2.63721 3.23163 3.28648 3.36364 3.39754 3.82265 4.42042 4.45386 4.68076 4.76430 4.93773 5.02604 5.11158 5.31939 5.32083 5.36008 5.42710 5.48754 5.65281 5.70638 5.73351 5.75152 6.07687 6.12014 6.40042 6.55889 6.77480 6.96427 7.57780 7.61351 7.61814 7.73262 7.94779 8.24136 8.35938 8.99892 9.57359 11.07455 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.044538 B = 0.002626 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.522583 B =10660.703383 C =10790.774402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.064 3.936 3 C -0.277 4.277 4 S 0.172 5.828 5 C 0.067 3.933 6 C -0.039 4.039 7 H 0.126 0.874 8 C -0.144 4.144 9 C 0.512 3.488 10 O -0.532 6.532 11 N -0.719 5.719 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.474 5.474 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.175 0.825 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.400 0.600 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 8.676 16.555 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.417 4.417 4 S 0.429 5.571 5 C -0.211 4.211 6 C -0.064 4.064 7 H 0.144 0.856 8 C -0.203 4.203 9 C 0.295 3.705 10 O -0.409 6.409 11 N -0.369 5.369 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.189 5.189 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.192 0.808 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.410 9.402 15.791 24.639 hybrid contribution -0.166 -1.103 0.033 1.116 sum -16.576 8.299 15.824 24.373 Atomic orbital electron populations 1.20331 0.87245 1.03103 1.02922 1.20211 0.98130 0.86525 1.02078 1.26910 0.96122 1.03924 1.14735 1.84002 1.05994 1.01878 1.65259 1.26151 0.93529 0.98009 1.03363 1.19883 0.93819 0.97092 0.95641 0.85606 1.21883 0.99313 1.03763 0.95295 1.20161 0.80848 0.82529 0.86952 1.90754 1.69294 1.34238 1.46589 1.46118 1.35255 1.29145 1.26429 1.21695 0.92296 1.00697 0.85917 1.21893 0.96605 0.95331 1.02041 1.19035 0.93785 0.97510 0.91107 1.21235 1.16850 1.10912 1.07019 0.92573 1.25038 0.97583 0.96323 0.95577 1.69973 1.36903 1.35736 1.10654 0.86523 0.81054 0.82378 0.77955 1.19749 1.20991 1.20998 1.66068 1.04284 1.31945 1.16585 0.90721 0.90684 0.90868 0.80800 0.90719 0.90235 0.91515 0.76607 0.91654 0.91572 0.92636 0.92656 0.96273 0.96257 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.31 36.00 0.37 -0.25 16 2 C 0.06 0.74 6.74 -84.22 -0.57 0.17 16 3 C -0.28 -2.93 11.13 29.12 0.32 -2.61 16 4 S 0.17 2.04 21.82 -107.50 -2.35 -0.31 16 5 C 0.07 0.87 5.57 -13.46 -0.07 0.79 16 6 C -0.04 -0.44 3.15 -92.93 -0.29 -0.73 16 7 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 8 C -0.14 -1.16 8.99 37.15 0.33 -0.82 16 9 C 0.51 7.33 7.11 -10.99 -0.08 7.25 16 10 O -0.53 -9.71 15.20 5.55 0.08 -9.63 16 11 N -0.72 -9.70 5.45 -60.29 -0.33 -10.03 16 12 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 13 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 19 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 N -0.47 -6.42 10.53 -8.06 -0.08 -6.50 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.51 7.56 -51.93 -0.39 0.11 16 30 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 31 H 0.40 4.16 7.89 -40.82 -0.32 3.83 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -33.58 337.64 -8.31 -41.88 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.74 Total: -1.42 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.70 Total: -9.45 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.32 Total: -42.48 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.35 Total: -0.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.58 -8.31 -41.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.373 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds