Wall clock time and date at job start Tue Mar 31 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47012 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47153 * 60.02100 * 6 5 4 9 9 C 1.50697 * 109.47042 * 300.02250 * 6 5 4 10 10 O 1.21290 * 120.00242 * 0.02562 * 9 6 5 11 11 N 1.34771 * 120.00245 * 179.97438 * 9 6 5 12 12 C 1.46504 * 120.00305 * 180.02562 * 11 9 6 13 13 C 1.52998 * 109.47147 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47029 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47314 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99866 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00332 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99994 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47596 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47273 * 120.00213 * 19 17 15 22 22 H 1.48498 * 109.47134 * 239.99906 * 19 17 15 23 23 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 25 25 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 26 26 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 27 27 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 28 28 H 1.09000 * 109.47285 * 59.99826 * 8 6 5 29 29 H 1.09002 * 109.47537 * 180.02562 * 8 6 5 30 30 H 1.09005 * 109.47377 * 300.00217 * 8 6 5 31 31 H 0.97002 * 119.99736 * 0.02562 * 11 9 6 32 32 H 1.09002 * 109.46954 * 299.99660 * 12 11 9 33 33 H 1.08996 * 109.47510 * 59.99958 * 12 11 9 34 34 H 1.08992 * 109.47342 * 299.99745 * 13 12 11 35 35 H 1.09005 * 109.47171 * 60.00128 * 13 12 11 36 36 H 1.09000 * 109.47343 * 300.00169 * 14 13 12 37 37 H 1.08996 * 109.47378 * 60.00012 * 14 13 12 38 38 H 0.96992 * 120.00063 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9388 -3.0710 -0.0008 8 6 5.3627 -2.0463 1.2495 9 6 5.3504 -2.0462 -1.2302 10 8 5.1889 -1.1469 -2.0279 11 7 6.3057 -2.9726 -1.4434 12 6 7.1487 -2.8938 -2.6390 13 6 8.1432 -4.0565 -2.6394 14 6 9.0232 -3.9745 -3.8883 15 6 10.0023 -5.1201 -3.8890 16 1 9.9977 -5.8349 -3.0794 17 6 10.9047 -5.2551 -4.9227 18 7 10.9107 -4.3844 -5.9083 19 14 12.1188 -6.6747 -4.9232 20 1 11.9083 -7.5066 -3.7112 21 1 11.9093 -7.5049 -6.1365 22 1 13.5045 -6.1409 -4.9219 23 7 2.2200 -1.1083 -0.0010 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8390 2.1309 0.0037 28 1 4.7358 -2.1047 2.1392 29 1 6.0716 -2.8744 1.2491 30 1 5.9075 -1.1022 1.2502 31 1 6.4351 -3.6916 -0.8053 32 1 6.5227 -2.9514 -3.5294 33 1 7.6932 -1.9495 -2.6381 34 1 8.7692 -3.9994 -1.7490 35 1 7.5983 -5.0006 -2.6406 36 1 8.3968 -4.0318 -4.7785 37 1 9.5680 -3.0305 -3.8876 38 1 11.5452 -4.4795 -6.6357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:53 Heat of formation + Delta-G solvation = -40.144070 kcal Electronic energy + Delta-G solvation = -18952.575547 eV Core-core repulsion = 15920.087336 eV Total energy + Delta-G solvation = -3032.488211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34146 -40.44856 -37.03205 -35.51604 -35.12697 -33.04087 -31.91833 -28.65521 -28.50802 -26.51659 -25.34446 -23.62233 -22.32307 -21.13922 -20.78007 -18.83123 -18.46154 -17.88359 -17.19484 -16.82082 -16.49071 -16.12918 -15.80773 -15.51656 -14.91513 -14.66859 -14.25555 -14.08524 -13.86635 -13.72773 -13.47895 -13.37232 -13.22721 -12.90952 -12.77052 -12.59328 -12.54065 -12.33761 -12.15958 -11.67025 -11.58681 -11.22503 -10.94417 -10.69773 -10.55876 -10.30125 -10.12751 -9.63137 -8.19409 -6.30649 -0.29924 0.43935 0.84457 1.42221 1.42450 1.49710 1.55544 1.69089 2.14845 2.42758 2.96995 3.14702 3.52714 3.85945 4.01063 4.15593 4.20960 4.23317 4.29233 4.37917 4.55834 4.73663 4.76057 4.77520 4.84479 4.94936 4.95912 4.99484 5.15350 5.18184 5.36005 5.39593 5.53306 5.71564 5.85043 6.22474 6.48511 6.73327 6.87523 7.14753 7.39129 8.92981 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.044538 B = 0.002626 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.522583 B =10660.703383 C =10790.774402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.042 3.958 3 C -0.270 4.270 4 S 0.154 5.846 5 C 0.049 3.951 6 C -0.031 4.031 7 H 0.142 0.858 8 C -0.140 4.140 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.705 5.705 12 C 0.130 3.870 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.538 4.538 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.257 1.257 21 H -0.281 1.281 22 H -0.280 1.280 23 N -0.495 5.495 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.203 0.797 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.418 0.582 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.068 0.932 36 H -0.010 1.010 37 H -0.008 1.008 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.630 7.668 18.589 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C -0.409 4.409 4 S 0.410 5.590 5 C -0.228 4.228 6 C -0.056 4.056 7 H 0.159 0.841 8 C -0.198 4.198 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.007 3.993 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.207 1.207 22 H -0.206 1.206 23 N -0.211 5.211 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.220 0.780 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.256 0.744 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.008 0.992 37 H 0.011 0.989 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.910 8.364 17.873 25.988 hybrid contribution -0.069 -0.722 -0.623 0.956 sum -16.980 7.642 17.250 25.383 Atomic orbital electron populations 1.20427 0.85028 1.04373 1.03477 1.20790 0.99712 0.86362 1.02210 1.27266 0.95008 1.05134 1.13490 1.84023 1.07517 1.02006 1.65423 1.26465 0.93810 0.98689 1.03881 1.19918 0.93418 0.97304 0.94934 0.84058 1.21932 0.99372 1.04339 0.94195 1.20752 0.80623 0.81542 0.87422 1.90736 1.70475 1.35969 1.48327 1.45841 1.34536 1.29744 1.25585 1.21256 0.91948 0.99288 0.86855 1.21597 0.96252 0.96592 0.99489 1.18955 0.93889 0.95701 0.92993 1.21718 1.17128 1.11532 1.07233 0.91403 1.26035 0.99808 0.99205 0.95202 1.70119 1.38064 1.37935 1.11552 0.85366 0.78192 0.78822 0.78458 1.18075 1.20713 1.20624 1.66110 1.04694 1.33137 1.17126 0.90419 0.90710 0.88354 0.77963 0.89163 0.88132 0.92132 0.74393 0.93472 0.92896 0.90937 0.91318 0.99157 0.98916 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.31 71.23 0.73 -0.34 16 2 C 0.04 0.91 6.74 41.52 0.28 1.19 16 3 C -0.27 -5.34 11.13 66.78 0.74 -4.60 16 4 S 0.15 3.59 21.82 -56.49 -1.23 2.35 16 5 C 0.05 1.23 5.57 88.52 0.49 1.72 16 6 C -0.03 -0.64 3.15 -12.29 -0.04 -0.68 16 7 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 8 C -0.14 -1.93 8.99 71.98 0.65 -1.29 16 9 C 0.51 14.29 7.11 87.66 0.62 14.92 16 10 O -0.58 -21.29 15.20 -3.06 -0.05 -21.34 16 11 N -0.71 -18.10 5.45 -463.06 -2.52 -20.62 16 12 C 0.13 4.44 5.67 86.38 0.49 4.93 16 13 C -0.10 -3.76 5.27 30.59 0.16 -3.59 16 14 C 0.02 1.14 4.97 29.85 0.15 1.29 16 15 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.18 16 18 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 19 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 N -0.49 -12.99 10.53 -179.40 -1.89 -14.88 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.10 0.89 8.12 -2.39 -0.02 0.87 16 27 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.95 7.56 -2.39 -0.02 0.93 16 30 H 0.06 0.93 7.93 -2.38 -0.02 0.91 16 31 H 0.42 7.59 7.89 -92.71 -0.73 6.86 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.96 337.64 1.92 -72.04 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.32 Total: 9.38 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.98 Total: -15.68 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -4.13 Total: -92.28 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.23 Total: 2.35 kcal Total: -73.96 1.92 -72.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.897 kcal (2) G-P(sol) polarization free energy of solvation -73.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds