Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 H 1.09001 * 109.46805 * 55.00440 * 3 2 1 5 5 C 1.50706 * 109.46917 * 175.00148 * 3 2 1 6 6 H 1.08003 * 119.99813 * 120.00223 * 5 3 2 7 7 C 1.37875 * 120.00106 * 300.00348 * 5 3 2 8 8 N 1.31520 * 119.99876 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00160 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46900 * 59.99459 * 9 7 5 11 11 H 1.48500 * 109.47426 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46938 * 299.99987 * 9 7 5 13 13 N 1.46494 * 109.47242 * 295.00066 * 3 2 1 14 14 C 1.34780 * 119.99870 * 85.00035 * 13 3 2 15 15 O 1.21277 * 119.99835 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99865 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47518 * 59.99772 * 16 14 13 18 18 C 1.52998 * 109.47180 * 299.99594 * 16 14 13 19 19 C 1.50706 * 109.46871 * 180.02562 * 16 14 13 20 20 N 1.29029 * 124.91082 * 239.99924 * 19 16 14 21 21 C 1.31784 * 117.11934 * 179.97438 * 20 19 16 22 22 C 1.50700 * 122.74599 * 180.02562 * 21 20 19 23 23 C 1.33639 * 114.50435 * 359.97438 * 21 20 19 24 24 S 1.70976 * 124.91946 * 59.69155 * 19 16 14 25 25 H 1.09003 * 109.47218 * 59.99625 * 1 2 3 26 26 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46808 * 299.99685 * 1 2 3 28 28 H 1.08999 * 109.46808 * 240.00315 * 2 1 3 29 29 H 1.08995 * 109.47491 * 120.00195 * 2 1 3 30 30 H 0.96998 * 119.99634 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00633 * 265.00438 * 13 3 2 32 32 H 1.09005 * 109.47120 * 300.00628 * 18 16 14 33 33 H 1.09002 * 109.46792 * 60.00403 * 18 16 14 34 34 H 1.09002 * 109.47539 * 180.02562 * 18 16 14 35 35 H 1.08997 * 109.47868 * 89.99651 * 22 21 20 36 36 H 1.09000 * 109.46822 * 209.99735 * 22 21 20 37 37 H 1.09005 * 109.47405 * 329.98992 * 22 21 20 38 38 H 1.07994 * 126.03803 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8811 1.3817 10 1 6.4995 2.2814 1.3820 11 1 6.3979 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3395 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 1 0.0672 2.6132 -3.4683 18 6 1.0066 4.4822 -2.9538 19 6 -1.3612 3.8864 -2.5228 20 7 -2.3614 3.5451 -3.2631 21 6 -3.5190 4.1230 -3.0126 22 6 -4.7688 3.8188 -3.7977 23 6 -3.4940 5.0001 -2.0047 24 16 -1.8525 5.0454 -1.3659 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.9757 5.2068 -2.1401 33 1 2.0175 4.0858 -3.0490 34 1 0.7179 4.9695 -3.8850 35 1 -5.3024 2.9936 -3.3261 36 1 -5.4087 4.7009 -3.8182 37 1 -4.4993 3.5419 -4.8170 38 1 -4.3324 5.5770 -1.6435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -7.761334 kcal Electronic energy + Delta-G solvation = -20187.977815 eV Core-core repulsion = 17156.893825 eV Total energy + Delta-G solvation = -3031.083990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97040 -38.99733 -35.25264 -34.08754 -32.38452 -31.27553 -30.42779 -27.56767 -26.99641 -25.37231 -23.46542 -22.43604 -20.15801 -19.65411 -19.30207 -17.68386 -16.89414 -15.87096 -15.61780 -15.28044 -14.66383 -14.59212 -14.16645 -13.66830 -13.44046 -12.97417 -12.85649 -12.68303 -12.58213 -12.18073 -12.05955 -11.84833 -11.51042 -11.34119 -11.25303 -11.07669 -10.98967 -10.82259 -10.33977 -10.19078 -9.64150 -9.51300 -9.35259 -9.08101 -8.86474 -8.52086 -8.48823 -7.86012 -6.13706 -4.23525 0.86336 1.58500 2.00003 2.87636 3.24323 3.28617 3.30253 3.31947 3.84658 4.23030 4.38541 4.83880 5.12319 5.16278 5.17333 5.18384 5.28007 5.53010 5.53456 5.66600 5.71022 5.77357 5.93548 6.10053 6.32383 6.39451 6.46115 6.66158 7.04121 7.18554 7.34784 7.41426 7.59923 7.70435 7.87582 7.89236 8.16337 8.60758 8.74247 9.06008 9.43673 10.91491 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031679 B = 0.004220 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.647247 B = 6632.861836 C = 6930.218083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.506 3.494 15 O -0.537 6.537 16 C -0.044 4.044 17 H 0.120 0.880 18 C -0.141 4.141 19 C 0.078 3.922 20 N -0.479 5.479 21 C 0.063 3.937 22 C -0.075 4.075 23 C -0.285 4.285 24 S 0.175 5.825 25 H 0.037 0.963 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 8.539 -10.488 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.288 3.712 15 O -0.415 6.415 16 C -0.069 4.069 17 H 0.137 0.863 18 C -0.200 4.200 19 C -0.200 4.200 20 N -0.194 5.194 21 C -0.070 4.070 22 C -0.135 4.135 23 C -0.425 4.425 24 S 0.432 5.568 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.216 8.563 -9.179 15.573 hybrid contribution 0.452 -0.363 -0.675 0.890 sum -8.764 8.200 -9.854 15.529 Atomic orbital electron populations 1.21834 0.98346 0.98057 1.01187 1.21941 0.92572 0.99819 1.02315 1.18809 0.94206 0.89166 0.80804 0.93196 1.21184 0.90633 1.39222 1.06343 0.92088 1.24879 0.98577 0.94770 0.95377 1.69887 1.35232 1.37463 1.09306 0.86520 0.84866 0.78314 0.77467 1.20178 1.21153 1.20154 1.46424 1.14141 1.55624 1.18680 1.19926 0.83203 0.79837 0.88222 1.90715 1.51141 1.59578 1.40108 1.19985 0.87985 0.99202 0.99773 0.86262 1.21848 0.98727 0.96924 1.02503 1.26235 0.98411 0.99336 0.96003 1.66089 0.98573 1.26044 1.28715 1.20174 0.94192 0.95730 0.96928 1.20307 0.91778 1.01978 0.99400 1.26868 1.02140 1.09446 1.04038 1.84020 1.01781 1.37572 1.33462 0.94346 0.95890 0.93188 0.95004 0.88263 0.92491 0.77830 0.91670 0.90266 0.91330 0.90870 0.91050 0.90827 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.49 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.35 11.30 55.43 0.63 -23.73 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.70 -13.89 4.91 -54.93 -0.27 -14.16 16 14 C 0.51 9.68 5.67 -10.98 -0.06 9.62 16 15 O -0.54 -12.09 12.32 5.56 0.07 -12.03 16 16 C -0.04 -0.67 3.16 -92.92 -0.29 -0.96 16 17 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 18 C -0.14 -1.69 8.99 37.16 0.33 -1.35 16 19 C 0.08 1.25 5.57 -13.45 -0.07 1.18 16 20 N -0.48 -7.80 10.53 -8.05 -0.08 -7.88 16 21 C 0.06 0.88 6.74 -84.22 -0.57 0.32 16 22 C -0.08 -0.76 10.31 36.01 0.37 -0.39 16 23 C -0.29 -3.71 11.13 29.12 0.32 -3.39 16 24 S 0.17 2.58 21.81 -107.50 -2.34 0.24 16 25 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.61 7.96 -40.82 -0.32 6.29 16 32 H 0.06 0.81 7.94 -51.93 -0.41 0.39 16 33 H 0.08 0.85 7.56 -51.93 -0.39 0.46 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -30.44 325.07 -7.93 -38.37 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.45 Total: 5.93 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.35 Total: -6.87 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.27 Total: -45.77 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.34 Total: 0.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.44 -7.93 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.607 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds