Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 H 1.09001 * 109.46805 * 55.00440 * 3 2 1 5 5 C 1.50706 * 109.46917 * 175.00148 * 3 2 1 6 6 H 1.08003 * 119.99813 * 120.00223 * 5 3 2 7 7 C 1.37875 * 120.00106 * 300.00348 * 5 3 2 8 8 N 1.31520 * 119.99876 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00160 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46900 * 59.99459 * 9 7 5 11 11 H 1.48500 * 109.47426 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46938 * 299.99987 * 9 7 5 13 13 N 1.46494 * 109.47242 * 295.00066 * 3 2 1 14 14 C 1.34780 * 119.99870 * 85.00035 * 13 3 2 15 15 O 1.21277 * 119.99835 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99865 * 180.02562 * 14 13 3 17 17 H 1.08995 * 109.47518 * 59.99772 * 16 14 13 18 18 C 1.52998 * 109.47180 * 299.99594 * 16 14 13 19 19 C 1.50706 * 109.46871 * 180.02562 * 16 14 13 20 20 N 1.29029 * 124.91082 * 239.99924 * 19 16 14 21 21 C 1.31784 * 117.11934 * 179.97438 * 20 19 16 22 22 C 1.50700 * 122.74599 * 180.02562 * 21 20 19 23 23 C 1.33639 * 114.50435 * 359.97438 * 21 20 19 24 24 S 1.70976 * 124.91946 * 59.69155 * 19 16 14 25 25 H 1.09003 * 109.47218 * 59.99625 * 1 2 3 26 26 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46808 * 299.99685 * 1 2 3 28 28 H 1.08999 * 109.46808 * 240.00315 * 2 1 3 29 29 H 1.08995 * 109.47491 * 120.00195 * 2 1 3 30 30 H 0.96998 * 119.99634 * 180.02562 * 8 7 5 31 31 H 0.96997 * 120.00633 * 265.00438 * 13 3 2 32 32 H 1.09005 * 109.47120 * 300.00628 * 18 16 14 33 33 H 1.09002 * 109.46792 * 60.00403 * 18 16 14 34 34 H 1.09002 * 109.47539 * 180.02562 * 18 16 14 35 35 H 1.08997 * 109.47868 * 89.99651 * 22 21 20 36 36 H 1.09000 * 109.46822 * 209.99735 * 22 21 20 37 37 H 1.09005 * 109.47405 * 329.98992 * 22 21 20 38 38 H 1.07994 * 126.03803 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8811 1.3817 10 1 6.4995 2.2814 1.3820 11 1 6.3979 0.2175 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3395 2.6319 -0.4343 16 6 0.0362 3.3378 -2.6547 17 1 0.0672 2.6132 -3.4683 18 6 1.0066 4.4822 -2.9538 19 6 -1.3612 3.8864 -2.5228 20 7 -2.3614 3.5451 -3.2631 21 6 -3.5190 4.1230 -3.0126 22 6 -4.7688 3.8188 -3.7977 23 6 -3.4940 5.0001 -2.0047 24 16 -1.8525 5.0454 -1.3659 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.9757 5.2068 -2.1401 33 1 2.0175 4.0858 -3.0490 34 1 0.7179 4.9695 -3.8850 35 1 -5.3024 2.9936 -3.3261 36 1 -5.4087 4.7009 -3.8182 37 1 -4.4993 3.5419 -4.8170 38 1 -4.3324 5.5770 -1.6435 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -27.469085 kcal Electronic energy + Delta-G solvation = -20188.832408 eV Core-core repulsion = 17156.893825 eV Total energy + Delta-G solvation = -3031.938582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25713 -40.39561 -37.04383 -35.37236 -34.22565 -32.81093 -31.76008 -28.92488 -28.49270 -26.45774 -25.23057 -23.92320 -21.83811 -21.03089 -20.71968 -19.12256 -18.31886 -17.41355 -17.26309 -16.71962 -16.32485 -15.77711 -15.60310 -15.14786 -14.69543 -14.53995 -14.08884 -14.00263 -13.64671 -13.44188 -13.31809 -13.22481 -13.07127 -12.89877 -12.83988 -12.63518 -12.52271 -12.18056 -12.10031 -12.05483 -11.58653 -11.04982 -10.76410 -10.64514 -10.50305 -10.20270 -9.63934 -9.57170 -8.13766 -6.30918 -0.25004 0.48870 0.90643 1.47257 1.48562 1.56172 1.75825 1.79598 2.36324 2.57609 3.07045 3.16110 3.70428 3.97957 4.07716 4.25006 4.33003 4.40886 4.48125 4.55296 4.74325 4.76553 4.78402 4.79625 4.87169 5.00037 5.06909 5.15586 5.25023 5.39543 5.43054 5.56287 5.63343 5.79940 5.93171 6.17816 6.76763 6.77727 6.95719 7.35207 7.55210 8.91307 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031679 B = 0.004220 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.647247 B = 6632.861836 C = 6930.218083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.697 5.697 14 C 0.504 3.496 15 O -0.574 6.574 16 C -0.034 4.034 17 H 0.134 0.866 18 C -0.137 4.137 19 C 0.057 3.943 20 N -0.496 5.496 21 C 0.042 3.958 22 C -0.072 4.072 23 C -0.272 4.272 24 S 0.150 5.850 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 9.237 -12.372 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.346 5.346 14 C 0.289 3.711 15 O -0.454 6.454 16 C -0.058 4.058 17 H 0.152 0.848 18 C -0.195 4.195 19 C -0.220 4.220 20 N -0.212 5.212 21 C -0.090 4.090 22 C -0.131 4.131 23 C -0.411 4.411 24 S 0.407 5.593 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.240 0.760 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.192 9.275 -11.115 17.148 hybrid contribution 0.336 -0.550 -0.076 0.649 sum -8.856 8.726 -11.191 16.727 Atomic orbital electron populations 1.21659 0.97274 0.98904 1.00053 1.21799 0.93405 0.99487 1.01325 1.18361 0.93662 0.88938 0.81282 0.98106 1.21555 0.91339 1.38898 1.06707 0.90737 1.25746 1.03138 0.94415 0.95072 1.70047 1.37088 1.38392 1.09848 0.85454 0.79308 0.78473 0.77438 1.19549 1.21490 1.18959 1.46145 1.15063 1.55632 1.17733 1.20619 0.82224 0.78971 0.89311 1.90697 1.52088 1.60691 1.41944 1.19925 0.88504 1.00217 0.97194 0.84831 1.21878 0.98610 0.95729 1.03284 1.26377 0.98820 1.00180 0.96671 1.66124 0.99347 1.26502 1.29227 1.20807 0.94705 0.95808 0.97726 1.20419 0.90454 1.03453 0.98801 1.27244 1.01750 1.09044 1.03043 1.84079 1.03765 1.37610 1.33880 0.94132 0.93930 0.95559 0.94049 0.90971 0.92691 0.75951 0.92455 0.88871 0.89024 0.90445 0.88271 0.90717 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.28 14.03 2.24 44.25 0.10 14.12 16 4 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 5 C -0.55 -28.06 8.73 25.60 0.22 -27.84 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.92 -51.78 11.30 21.45 0.24 -51.54 16 9 Si 0.97 41.26 29.54 68.60 2.03 43.29 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 N -0.70 -27.47 4.91 -446.09 -2.19 -29.66 16 14 C 0.50 19.30 5.67 87.66 0.50 19.80 16 15 O -0.57 -26.48 12.32 -3.02 -0.04 -26.52 16 16 C -0.03 -0.98 3.16 -12.28 -0.04 -1.02 16 17 H 0.13 3.47 8.14 -2.39 -0.02 3.45 16 18 C -0.14 -3.01 8.99 71.98 0.65 -2.37 16 19 C 0.06 1.78 5.57 88.52 0.49 2.28 16 20 N -0.50 -15.55 10.53 -179.39 -1.89 -17.44 16 21 C 0.04 1.10 6.74 41.52 0.28 1.38 16 22 C -0.07 -1.28 10.31 71.24 0.73 -0.55 16 23 C -0.27 -6.57 11.13 66.78 0.74 -5.82 16 24 S 0.15 4.38 21.81 -56.49 -1.23 3.15 16 25 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 3.97 5.95 -2.39 -0.01 3.95 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.41 13.25 7.96 -92.71 -0.74 12.51 16 32 H 0.06 1.36 7.94 -2.38 -0.02 1.34 16 33 H 0.09 1.78 7.56 -2.39 -0.02 1.76 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.18 8.12 -2.39 -0.02 1.17 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.20 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -67.06 325.07 2.15 -64.91 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.33 Total: 23.25 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 4.91 Total: -9.44 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.84 Total: -98.64 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.23 Total: 3.15 kcal Total: -67.06 2.15 -64.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.440 kcal (2) G-P(sol) polarization free energy of solvation -67.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds