Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 C 1.50703 * 109.46760 * 240.00356 * 2 1 3 5 5 H 1.08001 * 119.99352 * 241.32016 * 4 2 1 6 6 C 1.37874 * 120.00538 * 61.31800 * 4 2 1 7 7 N 1.31507 * 120.00372 * 194.00668 * 6 4 2 8 8 Si 1.86804 * 119.99507 * 14.01077 * 6 4 2 9 9 H 1.48494 * 109.47185 * 84.54266 * 8 6 4 10 10 H 1.48506 * 109.46902 * 204.54109 * 8 6 4 11 11 H 1.48501 * 109.47057 * 324.54058 * 8 6 4 12 12 C 1.52995 * 109.47275 * 120.00070 * 2 1 3 13 13 S 1.81001 * 109.47178 * 299.99706 * 12 2 1 14 14 C 1.76203 * 99.99947 * 179.97438 * 13 12 2 15 15 N 1.32556 * 119.22421 * 359.73577 * 14 13 12 16 16 C 1.32257 * 120.73538 * 179.71507 * 15 14 13 17 17 C 1.38626 * 119.20356 * 0.54355 * 16 15 14 18 18 C 1.50693 * 120.71577 * 179.70992 * 17 16 15 19 19 C 1.53009 * 109.47059 * 270.02027 * 18 17 16 20 20 O 1.42897 * 109.46984 * 180.02562 * 19 18 17 21 21 C 1.38622 * 118.56796 * 359.72725 * 17 16 15 22 22 N 1.32259 * 119.20150 * 0.02562 * 21 17 16 23 23 H 1.09005 * 109.46770 * 309.41189 * 1 2 3 24 24 H 1.08999 * 109.47451 * 69.40827 * 1 2 3 25 25 H 1.09003 * 109.47357 * 189.41201 * 1 2 3 26 26 H 1.08998 * 109.47115 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46868 * 300.00539 * 3 2 1 28 28 H 1.08999 * 109.47088 * 59.99683 * 3 2 1 29 29 H 0.96999 * 120.00627 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47561 * 59.99839 * 12 2 1 31 31 H 1.08999 * 109.47206 * 179.97438 * 12 2 1 32 32 H 1.07997 * 120.39908 * 180.27146 * 16 15 14 33 33 H 1.08997 * 109.47335 * 30.02089 * 18 17 16 34 34 H 1.09004 * 109.46945 * 150.02432 * 18 17 16 35 35 H 1.08997 * 109.47097 * 300.00207 * 19 18 17 36 36 H 1.08994 * 109.47149 * 59.99916 * 19 18 17 37 37 H 0.96698 * 113.99800 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.40210 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6354 -1.6008 -1.1316 6 6 1.7218 -0.2237 -2.4826 7 7 1.9146 -0.9731 -3.5459 8 14 1.0272 1.5004 -2.6686 9 1 2.1414 2.4812 -2.7092 10 1 0.2461 1.5861 -3.9287 11 1 0.1418 1.8044 -1.5158 12 6 2.0400 -0.7212 1.2492 13 16 1.4368 0.1320 2.7271 14 6 2.1522 -0.8811 3.9787 15 7 2.8849 -1.9273 3.6242 16 6 3.4405 -2.7045 4.5387 17 6 3.2394 -2.4203 5.8805 18 6 3.8509 -3.2870 6.9510 19 6 2.8797 -4.4127 7.3124 20 8 3.4593 -5.2341 8.3279 21 6 2.4633 -1.3219 6.2164 22 7 1.9404 -0.5823 5.2527 23 1 -0.3633 0.6525 0.7940 24 1 -0.3634 0.3614 -0.9620 25 1 -0.3634 -1.0138 0.1681 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6966 -0.6306 -4.4268 30 1 1.6767 -1.7490 1.2493 31 1 3.1300 -0.7216 1.2489 32 1 4.0401 -3.5529 4.2437 33 1 4.7831 -3.7156 6.5829 34 1 4.0529 -2.6833 7.8358 35 1 1.9475 -3.9841 7.6804 36 1 2.6776 -5.0163 6.4277 37 1 2.8973 -5.9698 8.6071 38 1 2.2870 -1.0736 7.2526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601097467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = -0.967487 kcal Electronic energy + Delta-G solvation = -19367.862737 eV Core-core repulsion = 16337.073351 eV Total energy + Delta-G solvation = -3030.789387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92868 -37.43864 -36.47184 -34.14373 -33.75614 -31.86760 -29.33604 -27.07657 -26.34089 -24.95947 -24.68659 -24.58865 -21.99637 -19.49801 -18.16710 -17.88252 -17.71334 -16.17349 -15.51636 -15.38485 -15.22636 -15.10203 -14.39084 -14.22038 -13.67408 -13.60994 -13.40991 -13.07681 -12.77390 -12.34102 -12.04082 -11.98378 -11.86899 -11.36725 -11.04669 -10.91462 -10.74497 -10.38230 -10.30903 -10.13276 -10.08837 -9.95661 -9.82464 -9.25096 -9.00911 -8.69760 -8.46171 -7.39452 -6.15587 -4.13060 0.68693 1.06463 1.58471 2.70483 3.26549 3.34954 3.40246 3.53848 3.86914 4.19744 4.36461 4.45770 4.50609 4.64088 4.74385 4.90441 4.99849 5.15386 5.15621 5.49114 5.61599 5.71279 5.80432 5.84422 6.12856 6.19368 6.41807 6.45712 6.56453 6.61124 6.71919 6.87498 6.91398 7.19730 7.19916 7.40264 7.68896 7.89890 8.43242 8.88356 9.48211 10.97265 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036943 B = 0.003530 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.742932 B = 7929.698333 C = 8388.128245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 C -0.153 4.153 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.881 3.119 9 H -0.284 1.284 10 H -0.304 1.304 11 H -0.247 1.247 12 C -0.066 4.066 13 S -0.007 6.007 14 C 0.295 3.705 15 N -0.517 5.517 16 C 0.171 3.829 17 C -0.219 4.219 18 C -0.063 4.063 19 C 0.079 3.921 20 O -0.576 6.576 21 C 0.166 3.834 22 N -0.507 5.507 23 H 0.031 0.969 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.265 0.735 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.382 0.618 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -4.017 20.601 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.049 3.951 3 C -0.210 4.210 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.173 1.173 12 C -0.214 4.214 13 S 0.232 5.768 14 C -0.079 4.079 15 N -0.234 5.234 16 C 0.001 3.999 17 C -0.228 4.228 18 C -0.102 4.102 19 C 0.001 3.999 20 O -0.381 6.381 21 C -0.004 4.004 22 N -0.223 5.223 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.184 0.816 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.229 0.771 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.246 -1.973 19.596 19.696 hybrid contribution 0.474 -1.201 0.404 1.353 sum 0.720 -3.174 20.000 20.263 Atomic orbital electron populations 1.22373 0.97470 1.00236 1.00366 1.18401 0.92671 0.92009 0.92049 1.22452 1.01315 0.98124 0.99135 1.20718 1.34178 1.12320 0.87748 0.90527 1.24936 0.94597 0.97298 0.95699 1.69936 1.48177 1.35925 0.98736 0.87348 0.79573 0.85586 0.76182 1.21181 1.23286 1.17255 1.23918 1.04048 1.02021 0.91448 1.85982 1.61071 1.33964 0.95754 1.25604 0.93646 0.93801 0.94805 1.68980 1.10751 1.05545 1.38119 1.23178 0.92512 0.95927 0.88308 1.21262 1.04474 1.00458 0.96629 1.20199 0.98372 0.94931 0.96679 1.22174 0.95389 0.91898 0.90391 1.86440 1.48294 1.45009 1.58392 1.23140 0.89193 0.88936 0.99110 1.68616 1.23133 1.30724 0.99829 0.95017 0.92332 0.93240 0.92622 0.93832 0.94180 0.92504 0.89267 0.89365 0.81556 0.89810 0.89895 0.93459 0.93339 0.77110 0.81612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 7.41 37.16 0.28 -2.88 16 2 C 0.05 1.16 0.52 -155.66 -0.08 1.08 16 3 C -0.15 -3.28 7.46 37.16 0.28 -3.00 16 4 C -0.51 -13.75 8.62 -34.44 -0.30 -14.05 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.17 5.32 -17.82 -0.09 2.07 16 7 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 8 Si 0.88 21.35 22.79 -169.99 -3.87 17.48 16 9 H -0.28 -6.85 7.10 56.52 0.40 -6.45 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 11 H -0.25 -5.54 4.65 56.52 0.26 -5.27 16 12 C -0.07 -1.32 3.73 37.15 0.14 -1.18 16 13 S -0.01 -0.13 19.49 -107.50 -2.10 -2.22 16 14 C 0.29 4.99 7.85 -90.84 -0.71 4.28 16 15 N -0.52 -8.36 9.14 -13.44 -0.12 -8.48 16 16 C 0.17 2.09 11.00 -17.23 -0.19 1.90 16 17 C -0.22 -2.26 5.17 -104.34 -0.54 -2.80 16 18 C -0.06 -0.48 5.76 -27.88 -0.16 -0.65 16 19 C 0.08 0.57 7.03 37.16 0.26 0.83 16 20 O -0.58 -4.30 13.66 -35.23 -0.48 -4.78 16 21 C 0.17 1.91 11.00 -17.23 -0.19 1.72 16 22 N -0.51 -7.79 10.40 -13.44 -0.14 -7.93 16 23 H 0.03 0.61 7.29 -51.93 -0.38 0.23 16 24 H 0.06 1.32 4.30 -51.93 -0.22 1.09 16 25 H 0.05 1.03 8.12 -51.93 -0.42 0.60 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.04 0.97 2.25 -51.93 -0.12 0.86 16 28 H 0.04 0.77 6.91 -51.93 -0.36 0.41 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.83 8.11 -51.91 -0.42 1.41 16 31 H 0.09 1.80 8.11 -51.92 -0.42 1.38 16 32 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 1.20 9.12 45.56 0.42 1.61 16 38 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 316.41 15.07 4.77 4.77 Total: -1.00 -31.97 316.41 -7.06 -39.03 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.57 Total: 0.65 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.31 Total: -12.67 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.51 Total: -42.25 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.48 Total: -4.78 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.87 Total: 17.48 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.10 Total: -2.22 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.97 -7.06 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601097467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.059 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds