Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27568 * 126.41552 * 2 1 4 4 N 1.39149 * 113.16459 * 179.97438 * 3 2 1 5 5 C 1.46498 * 124.44036 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47166 * 270.02582 * 5 4 3 7 7 H 1.09001 * 108.83318 * 54.28935 * 6 5 4 8 8 C 1.52329 * 108.87417 * 172.82798 * 6 5 4 9 9 C 1.54265 * 112.58960 * 120.81372 * 8 6 5 10 10 S 1.83954 * 102.57909 * 24.53330 * 9 8 6 11 11 C 1.54269 * 108.86694 * 295.76945 * 6 5 4 12 12 C 1.34955 * 111.12251 * 359.97438 * 4 3 2 13 13 O 1.21294 * 127.50119 * 179.97438 * 12 4 3 14 14 C 1.51435 * 126.41785 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.60911 * 61.36428 * 14 2 1 16 16 C 1.53004 * 110.60896 * 298.55619 * 14 2 1 17 17 C 1.50701 * 109.47211 * 175.00167 * 16 14 2 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 14 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 14 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 H 1.08998 * 109.47172 * 270.04364 * 1 2 3 26 26 H 1.09002 * 109.46979 * 30.04178 * 1 2 3 27 27 H 1.09001 * 109.47110 * 150.04092 * 1 2 3 28 28 H 1.09002 * 109.47079 * 30.01941 * 5 4 3 29 29 H 1.09001 * 109.47451 * 150.02360 * 5 4 3 30 30 H 1.08995 * 108.87228 * 241.63966 * 8 6 5 31 31 H 1.09004 * 108.86245 * 359.97438 * 8 6 5 32 32 H 1.09000 * 110.78676 * 142.80629 * 9 8 6 33 33 H 1.08994 * 110.78654 * 266.07157 * 9 8 6 34 34 H 1.08999 * 110.78222 * 332.92256 * 11 6 5 35 35 H 1.08995 * 110.78829 * 96.37658 * 11 6 5 36 36 H 1.09000 * 109.47211 * 54.99194 * 16 14 2 37 37 H 1.09007 * 109.46376 * 294.99736 * 16 14 2 38 38 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6937 0.0012 6 6 5.0795 2.0378 -1.4410 7 1 4.1826 2.3543 -1.9735 8 6 6.0770 3.1890 -1.4281 9 6 7.4153 2.8210 -2.1014 10 16 6.9293 1.4632 -3.2433 11 6 5.6450 0.7751 -2.1234 12 6 3.8036 -0.6292 0.0016 13 8 4.8579 -1.2289 0.0018 14 6 2.4060 -1.2186 0.0005 15 1 2.2404 -1.8180 -0.8947 16 6 2.1749 -2.0578 1.2588 17 6 2.9896 -3.3229 1.1756 18 1 3.6099 -3.5098 0.3115 19 6 2.9383 -4.2444 2.1998 20 7 2.1827 -4.0170 3.2519 21 14 3.9422 -5.8161 2.0931 22 1 5.2804 -5.5907 2.6962 23 1 3.2440 -6.9005 2.8293 24 1 4.1005 -6.2068 0.6692 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 4.3716 2.5963 0.5154 29 1 5.5698 1.2799 0.5150 30 1 5.6408 4.0393 -1.9522 31 1 6.2694 3.4770 -0.3946 32 1 7.8149 3.6694 -2.6571 33 1 8.1362 2.4701 -1.3631 34 1 6.0909 0.1050 -1.3884 35 1 4.8700 0.2640 -2.6945 36 1 1.1176 -2.3110 1.3376 37 1 2.4782 -1.4873 2.1367 38 1 2.1464 -4.6655 3.9723 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601947763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = 5.405846 kcal Electronic energy + Delta-G solvation = -20357.581779 eV Core-core repulsion = 17327.068761 eV Total energy + Delta-G solvation = -3030.513018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85437 -37.31269 -36.78945 -33.86641 -32.69578 -30.42843 -30.26382 -28.35246 -26.79763 -25.73761 -23.86889 -22.24900 -20.27691 -20.01758 -18.94223 -17.00161 -16.70843 -16.30788 -15.57686 -15.18275 -14.87661 -14.47975 -14.30487 -13.95315 -13.67176 -13.23409 -13.16790 -12.91427 -12.43701 -12.27797 -12.18139 -11.96118 -11.80387 -11.60623 -11.52887 -11.38800 -11.24037 -10.86700 -10.76733 -10.58624 -10.26172 -9.96732 -9.57058 -9.39276 -8.83422 -8.39722 -8.16744 -7.78816 -6.05470 -4.06913 1.80500 2.12537 2.22099 2.77600 3.15669 3.34063 3.39829 3.44913 4.27226 4.39632 4.44567 4.52465 4.66911 4.76922 4.86532 5.04671 5.22063 5.30828 5.33269 5.43231 5.46841 5.48061 5.59561 5.68475 5.75214 5.81080 5.88381 5.93825 6.03969 6.10426 6.34750 6.59588 6.80431 7.38976 7.43274 7.92610 8.13569 8.25761 8.48833 8.98147 9.57810 11.05775 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.004991 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.344110 B = 5608.293849 C = 6649.236464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.103 3.897 3 N -0.260 5.260 4 N -0.484 5.484 5 C 0.150 3.850 6 C -0.109 4.109 7 H 0.089 0.911 8 C -0.118 4.118 9 C -0.065 4.065 10 S -0.310 6.310 11 C -0.058 4.058 12 C 0.511 3.489 13 O -0.484 6.484 14 C -0.133 4.133 15 H 0.121 0.879 16 C 0.056 3.944 17 C -0.515 4.515 18 H 0.064 0.936 19 C 0.060 3.940 20 N -0.898 5.898 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.018 0.982 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.443 14.871 -8.323 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 N -0.066 5.066 4 N -0.305 5.305 5 C 0.027 3.973 6 C -0.130 4.130 7 H 0.107 0.893 8 C -0.157 4.157 9 C -0.213 4.213 10 S -0.084 6.084 11 C -0.205 4.205 12 C 0.299 3.701 13 O -0.354 6.354 14 C -0.157 4.157 15 H 0.139 0.861 16 C 0.017 3.983 17 C -0.553 4.553 18 H 0.082 0.918 19 C -0.141 4.141 20 N -0.537 5.537 21 Si 0.723 3.277 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.649 15.192 -9.287 18.002 hybrid contribution 0.293 -1.338 1.185 1.811 sum 2.942 13.854 -8.103 16.317 Atomic orbital electron populations 1.20294 0.85346 1.03538 1.04038 1.25465 0.97310 0.91888 0.94303 1.74489 0.88998 1.26917 1.16244 1.49771 1.02616 1.06320 1.71785 1.21566 0.88174 0.92242 0.95336 1.22188 0.99975 0.93557 0.97316 0.89292 1.21966 0.93196 0.98452 1.02113 1.24115 0.99748 0.98310 0.99114 1.87935 1.50791 1.39228 1.30406 1.24386 0.97650 0.99359 0.99148 1.21418 0.92036 0.81887 0.74786 1.90701 1.31039 1.65846 1.47786 1.22097 0.90762 0.96437 1.06385 0.86134 1.18886 0.98571 0.93239 0.87556 1.21161 1.26294 1.02738 1.05111 0.91826 1.24946 0.95437 0.98532 0.95212 1.69947 1.39409 1.36156 1.08193 0.86529 0.80219 0.82668 0.78259 1.20658 1.21270 1.19733 0.89313 0.90590 0.89557 0.89358 0.89314 0.90260 0.90230 0.87861 0.89189 0.87482 0.88451 0.94406 0.96325 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.47 36.01 0.38 -0.49 16 2 C 0.10 1.67 6.93 -78.73 -0.55 1.12 16 3 N -0.26 -4.30 12.02 35.53 0.43 -3.87 16 4 N -0.48 -8.35 3.42 -59.89 -0.21 -8.55 16 5 C 0.15 2.03 5.19 -4.04 -0.02 2.01 16 6 C -0.11 -1.29 2.86 -90.30 -0.26 -1.55 16 7 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 8 C -0.12 -1.06 5.97 -26.41 -0.16 -1.22 16 9 C -0.06 -0.62 7.46 37.82 0.28 -0.33 16 10 S -0.31 -4.16 23.26 -107.50 -2.50 -6.66 16 11 C -0.06 -0.82 5.85 37.82 0.22 -0.60 16 12 C 0.51 10.59 6.83 -10.43 -0.07 10.52 16 13 O -0.48 -11.41 15.26 5.54 0.08 -11.32 16 14 C -0.13 -2.66 2.96 -92.08 -0.27 -2.93 16 15 H 0.12 2.31 8.14 -51.93 -0.42 1.88 16 16 C 0.06 1.36 4.49 -27.88 -0.13 1.24 16 17 C -0.51 -14.35 8.44 -34.44 -0.29 -14.64 16 18 H 0.06 1.81 7.44 -52.49 -0.39 1.42 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 21 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 29 H 0.09 1.24 7.94 -51.93 -0.41 0.83 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.60 7.48 -51.93 -0.39 0.21 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 1.78 6.09 -51.93 -0.32 1.46 16 35 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -32.35 325.88 -8.24 -40.59 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.71 Total: -1.28 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.96 Total: -5.27 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.96 Total: -38.04 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.50 Total: -6.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.35 -8.24 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601947763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.994 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds