Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27568 * 126.41552 * 2 1 4 4 N 1.39149 * 113.16459 * 179.97438 * 3 2 1 5 5 C 1.46498 * 124.44036 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47166 * 270.02582 * 5 4 3 7 7 H 1.09001 * 108.83318 * 54.28935 * 6 5 4 8 8 C 1.52329 * 108.87417 * 172.82798 * 6 5 4 9 9 C 1.54265 * 112.58960 * 120.81372 * 8 6 5 10 10 S 1.83954 * 102.57909 * 24.53330 * 9 8 6 11 11 C 1.54269 * 108.86694 * 295.76945 * 6 5 4 12 12 C 1.34955 * 111.12251 * 359.97438 * 4 3 2 13 13 O 1.21294 * 127.50119 * 179.97438 * 12 4 3 14 14 C 1.51435 * 126.41785 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.60911 * 61.36428 * 14 2 1 16 16 C 1.53004 * 110.60896 * 298.55619 * 14 2 1 17 17 C 1.50701 * 109.47211 * 175.00167 * 16 14 2 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 14 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 14 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 H 1.08998 * 109.47172 * 270.04364 * 1 2 3 26 26 H 1.09002 * 109.46979 * 30.04178 * 1 2 3 27 27 H 1.09001 * 109.47110 * 150.04092 * 1 2 3 28 28 H 1.09002 * 109.47079 * 30.01941 * 5 4 3 29 29 H 1.09001 * 109.47451 * 150.02360 * 5 4 3 30 30 H 1.08995 * 108.87228 * 241.63966 * 8 6 5 31 31 H 1.09004 * 108.86245 * 359.97438 * 8 6 5 32 32 H 1.09000 * 110.78676 * 142.80629 * 9 8 6 33 33 H 1.08994 * 110.78654 * 266.07157 * 9 8 6 34 34 H 1.08999 * 110.78222 * 332.92256 * 11 6 5 35 35 H 1.08995 * 110.78829 * 96.37658 * 11 6 5 36 36 H 1.09000 * 109.47211 * 54.99194 * 16 14 2 37 37 H 1.09007 * 109.46376 * 294.99736 * 16 14 2 38 38 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6937 0.0012 6 6 5.0795 2.0378 -1.4410 7 1 4.1826 2.3543 -1.9735 8 6 6.0770 3.1890 -1.4281 9 6 7.4153 2.8210 -2.1014 10 16 6.9293 1.4632 -3.2433 11 6 5.6450 0.7751 -2.1234 12 6 3.8036 -0.6292 0.0016 13 8 4.8579 -1.2289 0.0018 14 6 2.4060 -1.2186 0.0005 15 1 2.2404 -1.8180 -0.8947 16 6 2.1749 -2.0578 1.2588 17 6 2.9896 -3.3229 1.1756 18 1 3.6099 -3.5098 0.3115 19 6 2.9383 -4.2444 2.1998 20 7 2.1827 -4.0170 3.2519 21 14 3.9422 -5.8161 2.0931 22 1 5.2804 -5.5907 2.6962 23 1 3.2440 -6.9005 2.8293 24 1 4.1005 -6.2068 0.6692 25 1 -0.3633 0.0008 1.0276 26 1 -0.3633 0.8896 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 4.3716 2.5963 0.5154 29 1 5.5698 1.2799 0.5150 30 1 5.6408 4.0393 -1.9522 31 1 6.2694 3.4770 -0.3946 32 1 7.8149 3.6694 -2.6571 33 1 8.1362 2.4701 -1.3631 34 1 6.0909 0.1050 -1.3884 35 1 4.8700 0.2640 -2.6945 36 1 1.1176 -2.3110 1.3376 37 1 2.4782 -1.4873 2.1367 38 1 2.1464 -4.6655 3.9723 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601947763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = -14.322639 kcal Electronic energy + Delta-G solvation = -20358.437270 eV Core-core repulsion = 17327.068761 eV Total energy + Delta-G solvation = -3031.368509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.31741 -38.51354 -38.21252 -35.64505 -34.25585 -32.21355 -31.22529 -29.43830 -28.32972 -27.24629 -25.09513 -23.92894 -21.73654 -21.09778 -20.34025 -18.61428 -18.01480 -17.82186 -17.00876 -16.67607 -16.21511 -16.13279 -15.65018 -15.21997 -14.85002 -14.52515 -14.41807 -14.14282 -14.01742 -13.51865 -13.44754 -13.24698 -13.15217 -12.95021 -12.82713 -12.76044 -12.61470 -12.59938 -12.30405 -12.00988 -11.64719 -11.54985 -11.25941 -10.94292 -10.66165 -10.41019 -9.55657 -8.86051 -8.23989 -6.31372 0.69602 0.81485 1.25386 1.35848 1.38012 1.47115 1.48933 1.64061 2.38791 2.99800 3.12021 3.30483 3.35575 3.57665 3.87217 3.91891 4.01821 4.18177 4.23754 4.28319 4.33423 4.46040 4.61695 4.62484 4.69773 4.78393 4.81846 4.89738 5.00459 5.06278 5.14540 5.26921 5.32986 5.38544 5.58521 5.73891 6.13523 6.72022 6.78880 6.94525 7.36486 8.87185 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.004991 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.344110 B = 5608.293849 C = 6649.236464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.116 3.884 3 N -0.258 5.258 4 N -0.479 5.479 5 C 0.143 3.857 6 C -0.096 4.096 7 H 0.089 0.911 8 C -0.113 4.113 9 C -0.050 4.050 10 S -0.355 6.355 11 C -0.053 4.053 12 C 0.499 3.501 13 O -0.525 6.525 14 C -0.140 4.140 15 H 0.126 0.874 16 C 0.068 3.932 17 C -0.530 4.530 18 H 0.051 0.949 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.952 3.048 22 H -0.284 1.284 23 H -0.273 1.273 24 H -0.268 1.268 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.038 0.962 37 H -0.015 1.015 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 16.791 -8.677 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.064 5.064 4 N -0.299 5.299 5 C 0.021 3.979 6 C -0.118 4.118 7 H 0.107 0.893 8 C -0.153 4.153 9 C -0.198 4.198 10 S -0.129 6.129 11 C -0.201 4.201 12 C 0.287 3.713 13 O -0.398 6.398 14 C -0.163 4.163 15 H 0.143 0.857 16 C 0.030 3.970 17 C -0.568 4.568 18 H 0.069 0.931 19 C -0.187 4.187 20 N -0.566 5.566 21 Si 0.778 3.222 22 H -0.210 1.210 23 H -0.198 1.198 24 H -0.192 1.192 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.004 0.996 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.231 17.154 -9.650 19.808 hybrid contribution 0.428 -1.895 1.297 2.336 sum 2.659 15.259 -8.353 17.598 Atomic orbital electron populations 1.20535 0.81861 1.05757 1.05015 1.25980 0.98979 0.89466 0.93261 1.74547 0.88403 1.26531 1.16961 1.49898 1.03762 1.05770 1.70442 1.21906 0.86963 0.92185 0.96852 1.22141 1.00796 0.93294 0.95529 0.89259 1.21961 0.92055 0.97402 1.03850 1.24304 1.00293 0.96953 0.98206 1.88063 1.51052 1.41706 1.32058 1.24197 0.97281 1.00110 0.98489 1.21539 0.91674 0.83338 0.74722 1.90665 1.32253 1.67037 1.49874 1.21989 0.92088 0.97833 1.04431 0.85666 1.18582 0.97731 0.92307 0.88375 1.21448 1.26401 1.04231 1.04729 0.93118 1.25699 0.96472 1.01537 0.94985 1.70027 1.40545 1.37276 1.08759 0.85636 0.78580 0.79493 0.78493 1.20976 1.19789 1.19230 0.88707 0.87533 0.88225 0.86509 0.90166 0.88104 0.87938 0.85261 0.88571 0.90344 0.90405 0.94403 0.99622 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 10.47 71.24 0.75 -0.79 16 2 C 0.12 3.60 6.93 46.83 0.32 3.93 16 3 N -0.26 -8.16 12.02 -40.85 -0.49 -8.65 16 4 N -0.48 -16.40 3.42 -461.68 -1.58 -17.98 16 5 C 0.14 3.69 5.19 86.38 0.45 4.14 16 6 C -0.10 -2.15 2.86 -10.59 -0.03 -2.18 16 7 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 8 C -0.11 -1.67 5.97 30.80 0.18 -1.48 16 9 C -0.05 -0.82 7.46 72.41 0.54 -0.28 16 10 S -0.36 -9.41 23.26 -56.49 -1.31 -10.73 16 11 C -0.05 -1.54 5.85 72.41 0.42 -1.12 16 12 C 0.50 21.31 6.83 87.94 0.60 21.91 16 13 O -0.52 -25.99 15.26 -3.07 -0.05 -26.04 16 14 C -0.14 -5.66 2.96 -11.74 -0.03 -5.70 16 15 H 0.13 4.89 8.14 -2.38 -0.02 4.87 16 16 C 0.07 3.43 4.49 29.85 0.13 3.56 16 17 C -0.53 -30.31 8.44 25.60 0.22 -30.09 16 18 H 0.05 2.98 7.44 -2.91 -0.02 2.95 16 19 C 0.01 0.66 5.46 84.65 0.46 1.12 16 20 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 21 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 22 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.12 2.37 8.09 -2.39 -0.02 2.35 16 29 H 0.08 2.23 7.94 -2.39 -0.02 2.21 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.12 7.48 -2.38 -0.02 1.10 16 32 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.76 6.09 -2.39 -0.01 2.74 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 37 H -0.01 -0.82 8.12 -2.38 -0.02 -0.84 16 38 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -72.48 325.88 3.94 -68.55 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.04 Total: 8.69 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.01 Total: -6.98 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.79 Total: -81.32 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: -9.41 SS G_CDS: -1.31 Total: -10.73 kcal Total: -72.48 3.94 -68.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601947763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.223 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds