Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27569 * 126.41826 * 2 1 4 4 N 1.39149 * 113.16515 * 179.97438 * 3 2 1 5 5 C 1.46498 * 124.44023 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46687 * 270.01942 * 5 4 3 7 7 H 1.09002 * 109.60077 * 305.32249 * 6 5 4 8 8 C 1.52941 * 109.60206 * 184.99788 * 6 5 4 9 9 C 1.53706 * 112.49190 * 209.97011 * 8 6 5 10 10 S 1.83393 * 104.96740 * 2.82715 * 9 8 6 11 11 C 1.55151 * 109.60180 * 65.46588 * 6 5 4 12 12 C 1.34950 * 111.12064 * 0.26308 * 4 3 2 13 13 O 1.21300 * 127.50093 * 179.71318 * 12 4 3 14 14 C 1.51442 * 126.41339 * 179.97438 * 2 1 3 15 15 H 1.08996 * 110.60942 * 298.54894 * 14 2 1 16 16 C 1.53003 * 110.60610 * 61.36305 * 14 2 1 17 17 C 1.50708 * 109.46617 * 185.00089 * 16 14 2 18 18 H 1.08001 * 119.99872 * 359.97438 * 17 16 14 19 19 C 1.37880 * 119.99716 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99751 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99800 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47182 * 90.00412 * 21 19 17 23 23 H 1.48501 * 109.46669 * 210.00116 * 21 19 17 24 24 H 1.48495 * 109.47150 * 329.99986 * 21 19 17 25 25 H 1.09004 * 109.47019 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47553 * 120.02110 * 1 2 3 27 27 H 1.09002 * 109.47346 * 240.02626 * 1 2 3 28 28 H 1.08992 * 109.47311 * 150.02186 * 5 4 3 29 29 H 1.08997 * 109.46828 * 30.01830 * 5 4 3 30 30 H 1.09007 * 108.88899 * 330.76380 * 8 6 5 31 31 H 1.09003 * 108.88697 * 89.31689 * 8 6 5 32 32 H 1.09004 * 110.33880 * 121.69903 * 9 8 6 33 33 H 1.09001 * 110.33740 * 243.84524 * 9 8 6 34 34 H 1.09006 * 111.12854 * 279.27716 * 11 6 5 35 35 H 1.08997 * 111.13496 * 43.45600 * 11 6 5 36 36 H 1.08998 * 109.47061 * 304.99307 * 16 14 2 37 37 H 1.08996 * 109.47182 * 65.00062 * 16 14 2 38 38 H 0.97001 * 119.99890 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.7022 1.6936 0.0012 6 6 5.0796 2.0375 -1.4411 7 1 5.3199 1.1233 -1.9841 8 6 6.2914 2.9706 -1.4459 9 6 6.2997 3.9174 -2.6567 10 16 4.7435 3.5509 -3.5552 11 6 3.8899 2.7527 -2.1341 12 6 3.8035 -0.6292 -0.0048 13 8 4.8578 -1.2290 -0.0106 14 6 2.4060 -1.2187 0.0005 15 1 2.2413 -1.8165 0.8970 16 6 2.1733 -2.0601 -1.2560 17 6 2.9880 -3.3251 -1.1715 18 1 3.6099 -3.5102 -0.3081 19 6 2.9403 -4.2456 -2.1969 20 7 3.6517 -5.3493 -2.1233 21 14 1.8652 -3.9251 -3.6904 22 1 2.6497 -3.1930 -4.7171 23 1 1.4001 -5.2186 -4.2523 24 1 0.6913 -3.1089 -3.2894 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5141 -0.8898 27 1 -0.3634 -0.5134 0.8902 28 1 5.5698 1.2798 0.5150 29 1 4.3717 2.5961 0.5154 30 1 6.2821 3.5657 -0.5327 31 1 7.2001 2.3688 -1.4648 32 1 6.3105 4.9558 -2.3256 33 1 7.1624 3.7136 -3.2910 34 1 3.1450 2.0343 -2.4763 35 1 3.4419 3.4973 -1.4762 36 1 1.1159 -2.3134 -1.3330 37 1 2.4756 -1.4913 -2.1353 38 1 3.6178 -5.9971 -2.8445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601947766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = 9.045091 kcal Electronic energy + Delta-G solvation = -20449.688099 eV Core-core repulsion = 17419.332891 eV Total energy + Delta-G solvation = -3030.355209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91007 -37.21821 -36.87665 -33.95066 -32.69129 -30.78473 -30.33664 -28.51602 -26.80360 -25.95400 -23.78180 -21.93826 -20.41997 -20.03304 -19.07185 -17.05456 -16.78098 -16.32514 -15.71322 -15.49415 -14.74462 -14.47617 -14.26462 -14.00549 -13.66739 -13.35886 -13.17772 -13.12042 -12.60206 -12.38777 -12.17995 -12.08151 -11.91568 -11.86683 -11.59637 -11.43697 -11.31212 -10.95625 -10.74021 -10.54378 -10.08925 -10.00098 -9.69553 -9.45965 -8.88878 -8.55860 -8.26191 -7.78267 -6.04855 -4.04200 1.76368 2.02805 2.24629 2.68545 3.12291 3.28043 3.34609 3.36089 4.24755 4.38655 4.41143 4.48570 4.59485 4.77761 4.80376 5.05696 5.17381 5.24722 5.31429 5.34878 5.44627 5.48649 5.54270 5.62222 5.62543 5.70660 5.82912 5.86679 5.93865 6.08275 6.18926 6.47722 6.71925 6.89417 7.02272 7.64279 8.05685 8.44254 8.48740 9.04282 9.54203 11.08445 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.005525 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.484241 B = 5067.051737 C = 5503.062029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.097 3.903 3 N -0.254 5.254 4 N -0.485 5.485 5 C 0.156 3.844 6 C -0.114 4.114 7 H 0.093 0.907 8 C -0.121 4.121 9 C -0.066 4.066 10 S -0.310 6.310 11 C -0.044 4.044 12 C 0.509 3.491 13 O -0.474 6.474 14 C -0.123 4.123 15 H 0.127 0.873 16 C 0.019 3.981 17 C -0.518 4.518 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.872 3.128 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.265 1.265 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.013 0.987 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 18.372 3.817 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 N -0.061 5.061 4 N -0.306 5.306 5 C 0.033 3.967 6 C -0.136 4.136 7 H 0.111 0.889 8 C -0.161 4.161 9 C -0.214 4.214 10 S -0.083 6.083 11 C -0.192 4.192 12 C 0.296 3.704 13 O -0.343 6.343 14 C -0.147 4.147 15 H 0.144 0.856 16 C -0.019 4.019 17 C -0.556 4.556 18 H 0.099 0.901 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.699 3.301 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.189 1.189 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.398 19.156 2.567 19.378 hybrid contribution 0.065 -0.946 0.168 0.963 sum -1.333 18.210 2.734 18.462 Atomic orbital electron populations 1.20320 0.85368 1.03619 1.04134 1.25455 0.97292 0.91894 0.94938 1.74488 0.89082 1.26847 1.15652 1.49780 1.02531 1.06335 1.71962 1.21332 0.88147 0.92016 0.95219 1.22580 0.93171 1.00261 0.97569 0.88895 1.21906 0.99002 0.97252 0.97903 1.23870 0.97189 1.02134 0.98187 1.87899 1.17945 1.79161 1.23332 1.24340 0.99093 1.00925 0.94848 1.21381 0.91972 0.81848 0.75215 1.90769 1.31001 1.65655 1.46871 1.21830 0.91046 0.96154 1.05621 0.85552 1.19345 0.98438 0.94880 0.89233 1.21025 1.26580 1.00931 1.07066 0.90076 1.24947 0.95249 0.94950 0.97856 1.69901 1.40663 1.09712 1.33186 0.86910 0.81543 0.77859 0.83788 1.20308 1.21107 1.18930 0.90511 0.89274 0.89506 0.89070 0.89467 0.90615 0.89844 0.89260 0.88415 0.87775 0.88857 0.94578 0.96899 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.46 36.01 0.38 -0.43 16 2 C 0.10 1.46 6.93 -78.72 -0.55 0.92 16 3 N -0.25 -3.90 11.79 35.53 0.42 -3.48 16 4 N -0.48 -8.04 3.32 -59.89 -0.20 -8.24 16 5 C 0.16 2.03 5.43 -4.04 -0.02 2.01 16 6 C -0.11 -1.46 2.76 -89.51 -0.25 -1.70 16 7 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 8 C -0.12 -1.17 5.86 -26.39 -0.15 -1.33 16 9 C -0.07 -0.64 7.38 37.52 0.28 -0.36 16 10 S -0.31 -4.13 23.23 -107.50 -2.50 -6.63 16 11 C -0.04 -0.57 6.41 38.30 0.25 -0.33 16 12 C 0.51 10.51 7.59 -10.42 -0.08 10.43 16 13 O -0.47 -11.66 17.03 5.54 0.09 -11.57 16 14 C -0.12 -2.36 2.97 -92.08 -0.27 -2.64 16 15 H 0.13 2.36 8.14 -51.93 -0.42 1.93 16 16 C 0.02 0.44 3.55 -27.88 -0.10 0.35 16 17 C -0.52 -14.64 8.99 -34.43 -0.31 -14.95 16 18 H 0.08 2.55 7.68 -52.49 -0.40 2.15 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 21 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 29 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 30 H 0.08 0.58 7.80 -51.93 -0.41 0.18 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.04 0.77 7.07 -51.93 -0.37 0.40 16 37 H 0.01 0.30 7.55 -51.93 -0.39 -0.09 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -33.85 327.16 -7.87 -41.71 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.79 Total: -0.34 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.93 Total: -6.04 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.99 Total: -38.76 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -2.50 Total: -6.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.85 -7.87 -41.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601947766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.758 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds