Wall clock time and date at job start Tue Mar 31 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38429 * 122.54296 * 2 1 4 4 C 1.33384 * 114.92241 * 180.27185 * 3 2 1 5 5 S 1.75883 * 109.59569 * 359.77783 * 4 3 2 6 6 C 1.33390 * 122.54127 * 179.83969 * 2 1 3 7 7 C 1.50695 * 125.20149 * 0.02562 * 6 2 1 8 8 N 1.46503 * 109.46805 * 89.72381 * 7 6 2 9 9 C 1.34783 * 119.99962 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00168 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99948 * 180.02562 * 9 8 7 12 12 N 1.46899 * 109.46974 * 180.02562 * 11 9 8 13 13 C 1.46904 * 110.99588 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.47811 * 35.00026 * 13 12 11 15 15 C 1.52999 * 109.47076 * 274.99504 * 13 12 11 16 16 C 1.50708 * 109.47075 * 154.99953 * 13 12 11 17 17 H 1.08004 * 119.99758 * 5.37097 * 16 13 12 18 18 C 1.37871 * 120.00151 * 185.37127 * 16 13 12 19 19 N 1.31515 * 120.00255 * 184.88942 * 18 16 13 20 20 Si 1.86805 * 120.00036 * 5.16628 * 18 16 13 21 21 H 1.48497 * 109.47004 * 269.72193 * 20 18 16 22 22 H 1.48503 * 109.46903 * 29.72486 * 20 18 16 23 23 H 1.48498 * 109.46970 * 149.72467 * 20 18 16 24 24 H 1.09002 * 109.46536 * 270.16804 * 1 2 3 25 25 H 1.09003 * 109.46976 * 30.16084 * 1 2 3 26 26 H 1.08993 * 109.46849 * 150.16333 * 1 2 3 27 27 H 1.08006 * 122.53608 * 0.04893 * 3 2 1 28 28 H 1.08003 * 125.19809 * 179.74981 * 4 3 2 29 29 H 1.09004 * 109.47421 * 329.72984 * 7 6 2 30 30 H 1.08996 * 109.47508 * 209.72189 * 7 6 2 31 31 H 0.97004 * 120.00341 * 359.97438 * 8 7 6 32 32 H 1.08999 * 109.47321 * 59.99772 * 11 9 8 33 33 H 1.09001 * 109.47365 * 300.00216 * 11 9 8 34 34 H 1.00907 * 110.99817 * 303.94941 * 12 11 9 35 35 H 1.09000 * 109.47265 * 174.98459 * 15 13 12 36 36 H 1.08997 * 109.47139 * 294.98703 * 15 13 12 37 37 H 1.09000 * 109.46670 * 54.98586 * 15 13 12 38 38 H 0.97000 * 119.99720 * 355.27241 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2517 1.1669 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9387 -0.7305 -0.0052 6 6 2.2245 -1.1245 0.0031 7 6 1.6537 -2.5191 0.0065 8 7 1.4632 -2.9720 -1.3737 9 6 0.9598 -4.1984 -1.6171 10 8 0.6650 -4.9272 -0.6936 11 6 0.7643 -4.6645 -3.0368 12 7 0.2066 -6.0235 -3.0336 13 6 0.0027 -6.5121 -4.4039 14 1 0.7950 -6.1300 -5.0476 15 6 -1.3531 -6.0277 -4.9216 16 6 0.0335 -8.0188 -4.4098 17 1 0.1019 -8.5612 -3.4784 18 6 -0.0256 -8.7048 -5.6043 19 7 -0.0958 -10.0181 -5.6056 20 14 0.0018 -7.7694 -7.2210 21 1 -1.3888 -7.4469 -7.6299 22 1 0.7726 -6.5114 -7.0520 23 1 0.6436 -8.6065 -8.2663 24 1 -0.3632 0.0030 1.0277 25 1 -0.3633 0.8886 -0.5163 26 1 -0.3633 -0.8914 -0.5113 27 1 1.7966 2.1464 0.0008 28 1 4.3078 1.7823 -0.0105 29 1 0.6945 -2.5180 0.5242 30 1 2.3418 -3.1922 0.5180 31 1 1.6986 -2.3890 -2.1124 32 1 1.7237 -4.6663 -3.5540 33 1 0.0768 -3.9913 -3.5489 34 1 0.7941 -6.6542 -2.5088 35 1 -1.4662 -6.3140 -5.9672 36 1 -2.1501 -6.4813 -4.3324 37 1 -1.4089 -4.9427 -4.8339 38 1 -0.0369 -10.5078 -4.7703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:17 Heat of formation + Delta-G solvation = -7.295592 kcal Electronic energy + Delta-G solvation = -19198.359804 eV Core-core repulsion = 16167.296011 eV Total energy + Delta-G solvation = -3031.063794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68225 -38.63179 -35.92181 -34.76148 -32.52156 -31.47402 -30.03294 -28.98633 -26.22680 -24.92424 -23.97843 -22.73988 -20.41833 -19.67905 -18.80406 -18.02422 -17.47737 -16.48762 -16.02745 -15.57025 -15.46646 -14.64025 -14.35565 -14.00819 -13.84648 -13.44372 -13.29615 -12.97069 -12.76241 -12.48167 -12.35021 -12.17106 -11.96004 -11.85814 -11.72676 -11.33803 -11.03227 -10.98580 -10.44816 -10.02939 -9.79215 -9.67893 -9.11207 -8.99333 -8.67226 -8.66856 -8.46696 -7.53372 -6.43679 -4.09572 0.55370 1.27605 1.65527 2.26902 2.86359 3.32110 3.36496 3.40865 3.57082 4.33993 4.46921 4.56164 4.85497 4.98081 5.07997 5.16687 5.20923 5.30826 5.32469 5.33925 5.50426 5.65450 5.69390 5.70917 5.73715 6.05995 6.16833 6.35493 6.39662 6.56069 6.70960 6.79767 7.42794 7.47509 7.69113 8.06739 8.36083 8.40554 8.48015 8.94459 9.61506 10.96527 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031558 B = 0.003014 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.041652 B = 9288.578154 C = 9300.326181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.208 4.208 5 S 0.112 5.888 6 C -0.206 4.206 7 C 0.196 3.804 8 N -0.736 5.736 9 C 0.514 3.486 10 O -0.522 6.522 11 C 0.041 3.959 12 N -0.664 5.664 13 C 0.182 3.818 14 H 0.002 0.998 15 C -0.136 4.136 16 C -0.596 4.596 17 H 0.063 0.937 18 C 0.028 3.972 19 N -0.912 5.912 20 Si 1.060 2.940 21 H -0.283 1.283 22 H -0.281 1.281 23 H -0.290 1.290 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.347 0.653 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.023 0.977 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 25.595 9.812 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.096 4.096 3 C -0.165 4.165 4 C -0.344 4.344 5 S 0.377 5.623 6 C -0.323 4.323 7 C 0.071 3.929 8 N -0.391 5.391 9 C 0.301 3.699 10 O -0.396 6.396 11 C -0.092 4.092 12 N -0.297 5.297 13 C 0.073 3.927 14 H 0.019 0.981 15 C -0.194 4.194 16 C -0.635 4.635 17 H 0.081 0.919 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.889 3.111 21 H -0.210 1.210 22 H -0.208 1.208 23 H -0.217 1.217 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.158 0.842 28 H 0.182 0.818 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.167 0.833 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.048 24.181 8.926 26.722 hybrid contribution -0.059 1.335 1.104 1.733 sum 6.989 25.516 10.030 28.294 Atomic orbital electron populations 1.20600 0.89462 1.03238 1.02651 1.18964 0.97653 0.91468 1.01552 1.20078 0.92856 0.99332 1.04264 1.25672 0.99845 0.99329 1.09529 1.84455 1.05361 1.00058 1.72390 1.24325 0.96140 0.98646 1.13225 1.19527 1.00755 0.88011 0.84654 1.46152 1.67631 1.17594 1.07755 1.21027 0.75961 0.80522 0.92411 1.90698 1.48633 1.54140 1.46096 1.21858 0.99606 0.95996 0.91773 1.60333 1.52226 1.00016 1.17148 1.19643 0.92463 0.96194 0.84384 0.98053 1.22034 1.00558 0.97365 0.99424 1.22182 1.55971 0.89776 0.95553 0.91927 1.25756 0.93112 0.96469 1.02368 1.70796 1.46308 1.06778 1.30822 0.83790 0.76964 0.74839 0.75462 1.20965 1.20772 1.21733 0.90911 0.91257 0.90984 0.84161 0.81773 0.89670 0.90675 0.76584 0.93142 0.88813 0.83349 0.94114 0.92534 0.95769 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.60 36.01 0.35 -0.39 16 2 C -0.08 -0.70 5.80 -106.25 -0.62 -1.32 16 3 C -0.13 -1.00 9.98 -41.21 -0.41 -1.41 16 4 C -0.21 -1.49 11.23 29.04 0.33 -1.17 16 5 S 0.11 0.95 23.33 -107.50 -2.51 -1.56 16 6 C -0.21 -1.92 5.87 -36.01 -0.21 -2.13 16 7 C 0.20 2.14 5.53 -5.19 -0.03 2.11 16 8 N -0.74 -8.65 5.55 -61.47 -0.34 -8.99 16 9 C 0.51 8.21 7.87 -10.98 -0.09 8.12 16 10 O -0.52 -10.46 16.20 5.56 0.09 -10.37 16 11 C 0.04 0.68 5.96 -4.98 -0.03 0.65 16 12 N -0.66 -14.48 5.93 -109.22 -0.65 -15.13 16 13 C 0.18 4.38 2.18 -68.86 -0.15 4.23 16 14 H 0.00 0.05 6.30 -51.93 -0.33 -0.28 16 15 C -0.14 -3.03 9.03 37.16 0.34 -2.70 16 16 C -0.60 -17.02 8.92 -34.44 -0.31 -17.33 16 17 H 0.06 1.94 7.90 -52.48 -0.41 1.53 16 18 C 0.03 0.80 5.43 -17.82 -0.10 0.71 16 19 N -0.91 -28.40 13.70 55.43 0.76 -27.64 16 20 Si 1.06 25.53 25.28 -169.99 -4.30 21.23 16 21 H -0.28 -6.49 6.82 56.52 0.39 -6.10 16 22 H -0.28 -6.26 6.35 56.52 0.36 -5.90 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 26 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 27 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.16 0.81 8.06 -52.48 -0.42 0.38 16 29 H 0.09 0.96 7.33 -51.93 -0.38 0.58 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.40 3.83 8.46 -40.82 -0.35 3.48 16 32 H 0.05 0.78 8.05 -51.93 -0.42 0.37 16 33 H 0.09 1.42 7.36 -51.93 -0.38 1.03 16 34 H 0.35 8.01 7.96 -39.29 -0.31 7.70 16 35 H 0.04 0.90 4.41 -51.93 -0.23 0.67 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.45 7.35 -51.93 -0.38 0.07 16 38 H 0.27 8.34 8.72 -40.82 -0.36 7.98 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -32.98 327.43 -8.26 -41.23 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.31 Total: 6.92 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.93 Total: -10.63 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.23 Total: -51.76 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.30 Total: 21.23 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.98 -8.26 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.939 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds