Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47105 * 2 1 4 4 N 1.29433 * 124.80276 * 90.34979 * 3 2 1 5 5 C 1.30938 * 117.36102 * 180.19634 * 4 3 2 6 6 C 1.35663 * 114.19260 * 359.47664 * 5 4 3 7 7 C 1.46686 * 126.13129 * 180.24650 * 6 5 4 8 8 O 1.21682 * 119.99859 * 352.32198 * 7 6 5 9 9 N 1.34776 * 120.00084 * 172.31885 * 7 6 5 10 10 C 1.46504 * 119.99630 * 2.11540 * 9 7 6 11 11 C 1.50693 * 109.47087 * 82.28172 * 10 9 7 12 12 H 1.08003 * 120.00439 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99924 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47315 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47238 * 120.00257 * 15 13 11 18 18 H 1.48501 * 109.47361 * 240.00261 * 15 13 11 19 19 C 1.46494 * 120.00273 * 182.11657 * 9 7 6 20 20 C 1.53003 * 109.47471 * 114.95811 * 19 9 7 21 21 C 1.52997 * 109.47410 * 234.95910 * 19 9 7 22 22 S 1.70949 * 124.80475 * 270.00087 * 3 2 1 23 23 H 1.09006 * 109.46624 * 299.99992 * 1 2 3 24 24 H 1.08996 * 109.47472 * 59.99687 * 1 2 3 25 25 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46624 * 240.00008 * 2 1 3 27 27 H 1.09004 * 109.47295 * 120.00598 * 2 1 3 28 28 H 1.08001 * 122.90683 * 179.74920 * 5 4 3 29 29 H 1.09003 * 109.46656 * 202.27637 * 10 9 7 30 30 H 1.09000 * 109.47462 * 322.27521 * 10 9 7 31 31 H 0.96997 * 120.00018 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.46954 * 354.96154 * 19 9 7 33 33 H 1.09006 * 109.46752 * 60.00219 * 20 19 9 34 34 H 1.08998 * 109.47774 * 179.97438 * 20 19 9 35 35 H 1.09008 * 109.46946 * 300.00573 * 20 19 9 36 36 H 1.09005 * 109.47063 * 59.99902 * 21 19 9 37 37 H 1.08998 * 109.47294 * 179.97438 * 21 19 9 38 38 H 1.08997 * 109.47141 * 300.00075 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2847 2.1151 1.0628 5 6 2.7128 3.3409 0.8932 6 6 2.8428 3.7096 -0.4058 7 6 3.3041 5.0142 -0.8926 8 8 3.4785 5.9289 -0.1092 9 7 3.5349 5.1998 -2.2074 10 6 3.2808 4.1128 -3.1562 11 6 1.8152 4.0834 -3.5056 12 1 1.1404 4.8022 -3.0647 13 6 1.3357 3.1389 -4.3882 14 7 2.1575 2.2639 -4.9255 15 14 -0.4811 3.1020 -4.8207 16 1 -1.1864 4.1841 -4.0882 17 1 -0.6462 3.3053 -6.2824 18 1 -1.0550 1.7875 -4.4359 19 6 4.0399 6.4884 -2.6878 20 6 5.4425 6.3017 -3.2697 21 6 3.1060 7.0300 -3.7719 22 16 2.3576 2.3407 -1.4037 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.9465 3.9999 1.7163 29 1 3.8667 4.2758 -4.0608 30 1 3.5659 3.1625 -2.7049 31 1 1.8201 1.5992 -5.5461 32 1 4.0817 7.1943 -1.8582 33 1 5.4007 5.5957 -4.0992 34 1 5.8181 7.2603 -3.6276 35 1 6.1079 5.9157 -2.4973 36 1 2.1066 7.1631 -3.3573 37 1 3.4814 7.9890 -4.1290 38 1 3.0641 6.3241 -4.6013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -4.262884 kcal Electronic energy + Delta-G solvation = -20827.145013 eV Core-core repulsion = 17796.212728 eV Total energy + Delta-G solvation = -3030.932286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48164 -38.58985 -35.81515 -33.66431 -33.23076 -31.64400 -28.84928 -27.57222 -26.66969 -25.39977 -23.33789 -22.68507 -21.64840 -19.37577 -17.92037 -17.69567 -16.82318 -15.89088 -15.72375 -14.70573 -14.52351 -14.33518 -13.93999 -13.75481 -13.41065 -13.24236 -12.87819 -12.57305 -12.48791 -11.95720 -11.87393 -11.81686 -11.64753 -11.41148 -11.16911 -11.02893 -10.87845 -10.84904 -10.51588 -10.36311 -10.10205 -9.88285 -9.30466 -8.97788 -8.51065 -8.45311 -8.13607 -7.73744 -6.42963 -4.45269 1.07918 2.22745 2.65698 3.08514 3.18156 3.19819 3.24426 3.78513 3.97007 4.16069 4.72086 4.91084 5.27676 5.31113 5.50641 5.52484 5.60368 5.62070 5.75351 5.99792 6.01456 6.04135 6.07684 6.08967 6.20768 6.30592 6.32459 6.39208 6.50127 6.64357 6.84667 6.88587 6.90134 7.36770 7.53970 7.72185 8.12717 8.44634 8.56164 8.87621 9.15378 10.61247 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.009576 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.878819 B = 2923.220883 C = 4492.454258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.066 4.066 4 N -0.500 5.500 5 C 0.093 3.907 6 C -0.321 4.321 7 C 0.596 3.404 8 O -0.567 6.567 9 N -0.590 5.590 10 C 0.228 3.772 11 C -0.531 4.531 12 H 0.069 0.931 13 C 0.076 3.924 14 N -0.876 5.876 15 Si 0.887 3.113 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.277 1.277 19 C 0.138 3.862 20 C -0.159 4.159 21 C -0.152 4.152 22 S 0.374 5.626 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.169 0.831 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.270 0.730 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -1.274 1.686 2.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.335 4.335 4 N -0.215 5.215 5 C -0.070 4.070 6 C -0.446 4.446 7 C 0.384 3.616 8 O -0.449 6.449 9 N -0.321 5.321 10 C 0.106 3.894 11 C -0.573 4.573 12 H 0.087 0.913 13 C -0.130 4.130 14 N -0.512 5.512 15 Si 0.714 3.286 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.203 1.203 19 C 0.034 3.966 20 C -0.217 4.217 21 C -0.210 4.210 22 S 0.640 5.360 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.186 0.814 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.009 -1.556 1.357 2.298 hybrid contribution -0.845 0.475 0.367 1.037 sum 0.164 -1.081 1.725 2.042 Atomic orbital electron populations 1.21760 0.94332 1.01748 1.02602 1.20034 0.96156 0.88908 1.03100 1.28493 1.03796 1.02678 0.98580 1.66197 1.16254 1.05878 1.33205 1.21784 0.98255 0.91928 0.94994 1.25856 1.18249 1.01974 0.98559 1.16839 0.76806 0.85638 0.82283 1.90694 1.55540 1.42830 1.55848 1.48108 1.62922 1.14660 1.06380 1.19628 0.97585 0.83437 0.88795 1.21558 0.93044 1.16124 1.26540 0.91274 1.24900 0.98298 0.94890 0.94957 1.69910 1.34927 1.17293 1.29064 0.86561 0.84654 0.78688 0.78704 1.19278 1.20460 1.20260 1.20897 0.92865 0.85496 0.97324 1.22147 0.96400 1.01826 1.01357 1.22056 0.99405 1.00150 0.99372 1.86536 1.50481 0.98535 1.00435 0.92334 0.92274 0.92094 0.90244 0.90144 0.81360 0.92684 0.94531 0.92008 0.89230 0.91887 0.92076 0.92880 0.92469 0.92971 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.04 -0.62 6.51 -27.88 -0.18 -0.80 16 3 C -0.07 -1.23 6.64 -13.29 -0.09 -1.32 16 4 N -0.50 -9.93 10.51 -11.50 -0.12 -10.05 16 5 C 0.09 1.87 11.10 -18.85 -0.21 1.67 16 6 C -0.32 -6.84 6.24 -37.09 -0.23 -7.08 16 7 C 0.60 13.28 7.57 -12.85 -0.10 13.18 16 8 O -0.57 -13.44 16.21 5.20 0.08 -13.35 16 9 N -0.59 -12.30 2.38 -169.00 -0.40 -12.70 16 10 C 0.23 4.99 3.87 -5.19 -0.02 4.97 16 11 C -0.53 -12.33 6.20 -34.44 -0.21 -12.55 16 12 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 13 C 0.08 1.76 5.06 -17.82 -0.09 1.67 16 14 N -0.88 -21.00 13.29 55.43 0.74 -20.26 16 15 Si 0.89 18.81 29.54 -169.99 -5.02 13.79 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 C 0.14 2.48 3.22 -67.93 -0.22 2.26 16 20 C -0.16 -2.44 9.26 37.16 0.34 -2.10 16 21 C -0.15 -2.56 8.69 37.16 0.32 -2.23 16 22 S 0.37 7.59 16.14 -107.50 -1.73 5.86 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.17 3.17 8.06 -52.49 -0.42 2.74 16 29 H 0.06 1.24 6.46 -51.93 -0.34 0.91 16 30 H 0.04 0.85 4.51 -22.88 -0.10 0.75 16 31 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 32 H 0.09 1.67 6.91 -51.93 -0.36 1.31 16 33 H 0.06 0.99 6.92 -51.93 -0.36 0.63 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.33 7.10 -51.93 -0.37 0.97 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -26.38 322.98 -7.20 -33.58 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.30 Total: 2.22 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.32 Total: -3.95 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.21 Total: -43.01 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -1.73 Total: 5.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.38 -7.20 -33.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.317 kcal (2) G-P(sol) polarization free energy of solvation -26.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds