Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47105 * 2 1 4 4 N 1.29433 * 124.80276 * 90.34979 * 3 2 1 5 5 C 1.30938 * 117.36102 * 180.19634 * 4 3 2 6 6 C 1.35663 * 114.19260 * 359.47664 * 5 4 3 7 7 C 1.46686 * 126.13129 * 180.24650 * 6 5 4 8 8 O 1.21682 * 119.99859 * 352.32198 * 7 6 5 9 9 N 1.34776 * 120.00084 * 172.31885 * 7 6 5 10 10 C 1.46504 * 119.99630 * 2.11540 * 9 7 6 11 11 C 1.50693 * 109.47087 * 82.28172 * 10 9 7 12 12 H 1.08003 * 120.00439 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99924 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47315 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47238 * 120.00257 * 15 13 11 18 18 H 1.48501 * 109.47361 * 240.00261 * 15 13 11 19 19 C 1.46494 * 120.00273 * 182.11657 * 9 7 6 20 20 C 1.53003 * 109.47471 * 114.95811 * 19 9 7 21 21 C 1.52997 * 109.47410 * 234.95910 * 19 9 7 22 22 S 1.70949 * 124.80475 * 270.00087 * 3 2 1 23 23 H 1.09006 * 109.46624 * 299.99992 * 1 2 3 24 24 H 1.08996 * 109.47472 * 59.99687 * 1 2 3 25 25 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46624 * 240.00008 * 2 1 3 27 27 H 1.09004 * 109.47295 * 120.00598 * 2 1 3 28 28 H 1.08001 * 122.90683 * 179.74920 * 5 4 3 29 29 H 1.09003 * 109.46656 * 202.27637 * 10 9 7 30 30 H 1.09000 * 109.47462 * 322.27521 * 10 9 7 31 31 H 0.96997 * 120.00018 * 179.97438 * 14 13 11 32 32 H 1.09006 * 109.46954 * 354.96154 * 19 9 7 33 33 H 1.09006 * 109.46752 * 60.00219 * 20 19 9 34 34 H 1.08998 * 109.47774 * 179.97438 * 20 19 9 35 35 H 1.09008 * 109.46946 * 300.00573 * 20 19 9 36 36 H 1.09005 * 109.47063 * 59.99902 * 21 19 9 37 37 H 1.08998 * 109.47294 * 179.97438 * 21 19 9 38 38 H 1.08997 * 109.47141 * 300.00075 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2847 2.1151 1.0628 5 6 2.7128 3.3409 0.8932 6 6 2.8428 3.7096 -0.4058 7 6 3.3041 5.0142 -0.8926 8 8 3.4785 5.9289 -0.1092 9 7 3.5349 5.1998 -2.2074 10 6 3.2808 4.1128 -3.1562 11 6 1.8152 4.0834 -3.5056 12 1 1.1404 4.8022 -3.0647 13 6 1.3357 3.1389 -4.3882 14 7 2.1575 2.2639 -4.9255 15 14 -0.4811 3.1020 -4.8207 16 1 -1.1864 4.1841 -4.0882 17 1 -0.6462 3.3053 -6.2824 18 1 -1.0550 1.7875 -4.4359 19 6 4.0399 6.4884 -2.6878 20 6 5.4425 6.3017 -3.2697 21 6 3.1060 7.0300 -3.7719 22 16 2.3576 2.3407 -1.4037 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.9465 3.9999 1.7163 29 1 3.8667 4.2758 -4.0608 30 1 3.5659 3.1625 -2.7049 31 1 1.8201 1.5992 -5.5461 32 1 4.0817 7.1943 -1.8582 33 1 5.4007 5.5957 -4.0992 34 1 5.8181 7.2603 -3.6276 35 1 6.1079 5.9157 -2.4973 36 1 2.1066 7.1631 -3.3573 37 1 3.4814 7.9890 -4.1290 38 1 3.0641 6.3241 -4.6013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -18.391003 kcal Electronic energy + Delta-G solvation = -20827.757655 eV Core-core repulsion = 17796.212728 eV Total energy + Delta-G solvation = -3031.544927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13558 -40.17654 -37.47624 -35.18265 -34.71675 -33.23129 -30.37851 -29.32711 -27.99592 -26.83258 -25.11601 -24.10135 -23.11828 -20.88830 -19.48972 -19.33785 -18.62673 -17.47054 -17.35386 -16.43208 -16.18868 -15.79109 -15.37152 -15.12153 -14.84957 -14.66957 -14.48090 -14.28034 -13.92852 -13.61869 -13.28321 -13.13788 -12.98824 -12.80893 -12.70135 -12.55453 -12.31737 -12.17490 -12.01994 -11.98908 -11.67438 -11.57979 -11.03080 -10.72402 -10.13763 -10.06202 -9.77748 -9.37446 -8.22923 -6.29662 -0.50868 0.62815 1.07528 1.39363 1.46034 1.52528 1.58902 2.17381 2.30315 2.42117 3.09097 3.29655 3.72756 4.07257 4.10473 4.24285 4.29168 4.36709 4.39804 4.50426 4.61778 4.75477 4.81058 4.82528 4.96932 4.97738 5.01678 5.04938 5.09457 5.25937 5.35186 5.36596 5.46208 5.64332 5.79802 5.93353 6.41519 6.72547 6.86210 7.15866 7.34055 8.81525 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013063 B = 0.009576 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.878819 B = 2923.220883 C = 4492.454258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C -0.046 4.046 4 N -0.510 5.510 5 C 0.097 3.903 6 C -0.344 4.344 7 C 0.588 3.412 8 O -0.590 6.590 9 N -0.590 5.590 10 C 0.239 3.761 11 C -0.532 4.532 12 H 0.049 0.951 13 C 0.053 3.947 14 N -0.893 5.893 15 Si 0.927 3.073 16 H -0.278 1.278 17 H -0.276 1.276 18 H -0.269 1.269 19 C 0.127 3.873 20 C -0.150 4.150 21 C -0.142 4.142 22 S 0.349 5.651 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.179 0.821 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.273 0.727 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -2.104 1.605 2.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.316 4.316 4 N -0.226 5.226 5 C -0.065 4.065 6 C -0.469 4.469 7 C 0.377 3.623 8 O -0.474 6.474 9 N -0.319 5.319 10 C 0.116 3.884 11 C -0.574 4.574 12 H 0.067 0.933 13 C -0.152 4.152 14 N -0.530 5.530 15 Si 0.753 3.247 16 H -0.203 1.203 17 H -0.202 1.202 18 H -0.194 1.194 19 C 0.025 3.975 20 C -0.207 4.207 21 C -0.200 4.200 22 S 0.614 5.386 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.196 0.804 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.794 -2.370 1.244 2.792 hybrid contribution -0.777 0.692 0.473 1.142 sum 0.018 -1.678 1.717 2.401 Atomic orbital electron populations 1.21755 0.93131 1.03618 1.01619 1.20300 0.97056 0.86485 1.04785 1.29092 1.01355 1.03902 0.97201 1.66298 1.17048 1.05812 1.33396 1.22034 0.97226 0.92253 0.94998 1.25862 1.19758 1.02127 0.99167 1.17047 0.76769 0.85851 0.82608 1.90662 1.56863 1.43579 1.56330 1.48223 1.62384 1.15441 1.05882 1.19423 0.96754 0.83685 0.88498 1.21421 0.93293 1.15873 1.26780 0.93257 1.25254 1.00463 0.94612 0.94831 1.69946 1.35883 1.17698 1.29508 0.85960 0.81855 0.78556 0.78355 1.20318 1.20171 1.19386 1.21190 0.94650 0.84194 0.97514 1.22073 0.94453 1.03460 1.00763 1.21966 0.98326 1.01455 0.98206 1.86504 1.51579 0.98930 1.01580 0.92962 0.93599 0.88860 0.88647 0.88334 0.80368 0.93419 0.94943 0.91691 0.89879 0.92467 0.88847 0.93315 0.94360 0.89456 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.89 71.98 0.71 -2.80 16 2 C -0.05 -1.25 6.51 29.85 0.19 -1.05 16 3 C -0.05 -1.63 6.64 88.46 0.59 -1.05 16 4 N -0.51 -19.67 10.51 -190.30 -2.00 -21.67 16 5 C 0.10 3.90 11.10 84.23 0.93 4.84 16 6 C -0.34 -14.79 6.24 23.88 0.15 -14.64 16 7 C 0.59 26.64 7.57 86.45 0.65 27.29 16 8 O -0.59 -28.40 16.21 -4.29 -0.07 -28.47 16 9 N -0.59 -24.91 2.38 -806.83 -1.92 -26.82 16 10 C 0.24 10.58 3.87 85.63 0.33 10.92 16 11 C -0.53 -25.00 6.20 25.60 0.16 -24.84 16 12 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 13 C 0.05 2.45 5.06 84.66 0.43 2.88 16 14 N -0.89 -42.44 13.29 21.45 0.28 -42.16 16 15 Si 0.93 38.07 29.54 68.60 2.03 40.09 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 C 0.13 4.53 3.22 44.99 0.14 4.68 16 20 C -0.15 -4.40 9.26 71.98 0.67 -3.74 16 21 C -0.14 -4.69 8.69 71.98 0.63 -4.07 16 22 S 0.35 14.08 16.14 -56.49 -0.91 13.17 16 23 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.18 6.67 8.06 -2.91 -0.02 6.64 16 29 H 0.05 2.18 6.46 -2.39 -0.02 2.16 16 30 H 0.03 1.53 4.51 -20.86 -0.09 1.44 16 31 H 0.27 12.33 8.31 -92.71 -0.77 11.56 16 32 H 0.08 3.09 6.91 -2.38 -0.02 3.07 16 33 H 0.06 1.75 6.92 -2.38 -0.02 1.73 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 2.12 7.10 -2.39 -0.02 2.10 16 Total: -1.00 -55.68 322.98 3.97 -51.71 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.97 Total: 15.74 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.59 Total: -1.59 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.63 Total: -90.65 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.07 Total: -28.47 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 14.08 SS G_CDS: -0.91 Total: 13.17 kcal Total: -55.68 3.97 -51.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.315 kcal (2) G-P(sol) polarization free energy of solvation -55.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds