Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46525 * 2 1 4 4 C 1.53000 * 109.47480 * 119.99842 * 2 1 3 5 5 C 1.53002 * 109.46592 * 65.00200 * 4 2 1 6 6 N 1.46504 * 109.46847 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00152 * 274.93593 * 6 5 4 8 8 C 1.50704 * 109.46986 * 263.96492 * 7 6 5 9 9 H 1.07999 * 119.99806 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00139 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99709 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00168 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47176 * 60.00248 * 12 10 8 14 14 H 1.48503 * 109.47188 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47167 * 300.00056 * 12 10 8 16 16 C 1.34775 * 119.99767 * 94.93172 * 6 5 4 17 17 O 1.21618 * 120.00317 * 354.51512 * 16 6 5 18 18 C 1.47258 * 119.99956 * 174.78744 * 16 6 5 19 19 N 1.30560 * 125.53825 * 4.03307 * 18 16 6 20 20 C 1.30709 * 115.90479 * 179.77899 * 19 18 16 21 21 C 1.34238 * 115.78132 * 0.51687 * 20 19 18 22 22 S 1.71069 * 109.09137 * 359.72507 * 21 20 19 23 23 H 1.09001 * 109.47529 * 299.99653 * 1 2 3 24 24 H 1.08995 * 109.47876 * 60.00098 * 1 2 3 25 25 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46965 * 240.00814 * 2 1 3 27 27 H 1.09008 * 109.46670 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47546 * 299.99976 * 3 2 1 29 29 H 1.08999 * 109.47520 * 60.00459 * 3 2 1 30 30 H 1.08993 * 109.46994 * 305.00649 * 4 2 1 31 31 H 1.09000 * 109.47040 * 185.00303 * 4 2 1 32 32 H 1.08998 * 109.47503 * 60.00328 * 5 4 2 33 33 H 1.09000 * 109.47512 * 299.99814 * 5 4 2 34 34 H 1.09003 * 109.47137 * 23.96110 * 7 6 5 35 35 H 1.08994 * 109.47225 * 143.96474 * 7 6 5 36 36 H 0.96998 * 119.99951 * 179.97438 * 11 10 8 37 37 H 1.07995 * 122.11065 * 180.21605 * 20 19 18 38 38 H 1.08002 * 125.45259 * 179.72075 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1243 -2.8862 2.3837 7 6 3.4920 -3.4098 2.4195 8 6 3.4808 -4.8700 2.0468 9 1 2.5481 -5.3591 1.8077 10 6 4.6613 -5.5814 2.0111 11 7 5.7971 -4.9859 2.3028 12 14 4.6474 -7.3915 1.5499 13 1 4.0919 -7.5494 0.1818 14 1 6.0339 -7.9222 1.5860 15 1 3.8053 -8.1420 2.5158 16 6 1.3157 -3.0399 3.4510 17 8 0.2164 -2.5199 3.4610 18 6 1.7658 -3.8326 4.6076 19 7 2.9479 -4.3693 4.7460 20 6 3.1476 -5.0328 5.8543 21 6 2.1063 -5.0838 6.6999 22 16 0.7947 -4.2170 6.0254 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1264 -0.6442 1.2951 32 1 2.0700 -2.6550 0.3002 33 1 0.5490 -2.2724 1.1420 34 1 4.1107 -2.8587 1.7111 35 1 3.8991 -3.2943 3.4239 36 1 6.6275 -5.4864 2.2781 37 1 4.0893 -5.5138 6.0737 38 1 2.0979 -5.5910 7.6534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618382433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = 7.787963 kcal Electronic energy + Delta-G solvation = -20405.612162 eV Core-core repulsion = 17375.202440 eV Total energy + Delta-G solvation = -3030.409722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65999 -38.39721 -36.52680 -34.70026 -32.40769 -30.47927 -28.79802 -27.00400 -26.98172 -25.59418 -23.16505 -22.83900 -20.72241 -19.75054 -18.75525 -17.38148 -16.53475 -15.92710 -15.48375 -15.01203 -14.72624 -14.56065 -14.18661 -13.83775 -13.45618 -13.13667 -12.91661 -12.80494 -12.30381 -12.19482 -12.04819 -11.68322 -11.41310 -11.05775 -10.98329 -10.94104 -10.71771 -10.67240 -10.46765 -10.22181 -10.02598 -9.68802 -9.52533 -9.15555 -8.75576 -8.44362 -8.28842 -7.67854 -5.99842 -4.00365 0.80786 1.67332 2.17553 3.01530 3.30536 3.34893 3.38376 3.88675 3.95507 4.44811 4.80859 5.08476 5.13982 5.16669 5.36177 5.40769 5.54256 5.70538 5.74028 5.82502 5.83886 5.90689 5.99467 6.02570 6.12199 6.25619 6.33937 6.40694 6.52113 6.64076 6.69268 6.83503 7.48015 7.69814 7.90168 8.18263 8.27474 8.29100 8.82430 9.00967 9.60697 11.08533 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.007105 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.964844 B = 3939.896340 C = 5639.946849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.118 3.882 6 N -0.567 5.567 7 C 0.229 3.771 8 C -0.505 4.505 9 H 0.050 0.950 10 C 0.071 3.929 11 N -0.890 5.890 12 Si 0.886 3.114 13 H -0.279 1.279 14 H -0.287 1.287 15 H -0.279 1.279 16 C 0.591 3.409 17 O -0.566 6.566 18 C 0.007 3.993 19 N -0.354 5.354 20 C 0.033 3.967 21 C -0.290 4.290 22 S 0.170 5.830 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.261 0.739 37 H 0.170 0.830 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 5.592 2.902 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.296 5.296 7 C 0.110 3.890 8 C -0.545 4.545 9 H 0.069 0.931 10 C -0.131 4.131 11 N -0.529 5.529 12 Si 0.714 3.286 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.205 1.205 16 C 0.375 3.625 17 O -0.447 6.447 18 C -0.270 4.270 19 N -0.069 5.069 20 C -0.124 4.124 21 C -0.430 4.430 22 S 0.424 5.576 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.188 0.812 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.573 6.125 2.784 10.131 hybrid contribution 1.192 -1.863 0.051 2.212 sum -6.382 4.263 2.835 8.181 Atomic orbital electron populations 1.21881 0.95363 1.02057 1.01170 1.21050 0.95811 0.95954 0.98474 1.21820 1.00970 0.96151 1.01267 1.21994 1.01367 0.95559 0.97719 1.21501 1.00038 0.91301 0.87725 1.48166 1.16117 1.52786 1.12512 1.19922 0.74948 0.93779 1.00349 1.21180 0.93041 0.94759 1.45485 0.93149 1.24738 0.95396 0.97566 0.95388 1.69909 0.97880 1.36188 1.48934 0.86768 0.76863 0.85987 0.78988 1.20439 1.21298 1.20528 1.16786 0.84231 0.79796 0.81729 1.90736 1.21653 1.50874 1.81477 1.27807 0.93151 1.06111 0.99894 1.67473 1.16586 1.05431 1.17442 1.22014 1.00595 1.00517 0.89321 1.26738 0.98935 1.10157 1.07212 1.83702 1.15976 1.44543 1.13369 0.92736 0.93288 0.92268 0.91129 0.92720 0.93073 0.92893 0.91861 0.91547 0.90335 0.90443 0.95198 0.90956 0.92975 0.81247 0.80841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.95 37.16 0.33 -1.48 16 2 C -0.09 -1.21 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.13 -2.03 5.01 -26.73 -0.13 -2.16 16 5 C 0.12 2.16 5.15 -4.04 -0.02 2.14 16 6 N -0.57 -12.33 2.47 -176.39 -0.44 -12.77 16 7 C 0.23 5.61 4.78 -5.19 -0.02 5.59 16 8 C -0.51 -13.42 7.94 -34.44 -0.27 -13.69 16 9 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 10 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 11 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 12 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 C 0.59 12.98 7.61 -12.60 -0.10 12.88 16 17 O -0.57 -12.70 16.50 5.26 0.09 -12.62 16 18 C 0.01 0.14 7.12 -14.43 -0.10 0.04 16 19 N -0.35 -7.67 6.10 -11.50 -0.07 -7.74 16 20 C 0.03 0.59 11.24 -19.44 -0.22 0.37 16 21 C -0.29 -4.31 11.09 29.32 0.33 -3.98 16 22 S 0.17 2.76 23.03 -107.50 -2.48 0.28 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 33 H 0.08 1.40 5.78 -51.93 -0.30 1.10 16 34 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.07 1.88 5.67 -51.93 -0.29 1.59 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 38 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -29.47 330.22 -7.98 -37.45 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.55 Total: -0.38 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.23 Total: -1.28 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.23 Total: -44.57 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.48 Total: 0.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.47 -7.98 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618382433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.241 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds