Wall clock time and date at job start Tue Mar 31 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47052 * 239.99696 * 2 1 3 5 5 C 1.53004 * 109.47169 * 119.99958 * 2 1 3 6 6 N 1.46504 * 109.47010 * 60.75690 * 5 2 1 7 7 C 1.46496 * 119.99927 * 274.61340 * 6 5 2 8 8 C 1.50699 * 109.47118 * 269.99931 * 7 6 5 9 9 H 1.07996 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00320 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99347 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00132 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47082 * 59.99824 * 12 10 8 14 14 H 1.48503 * 109.47254 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47360 * 299.99868 * 12 10 8 16 16 C 1.34772 * 119.99842 * 94.61365 * 6 5 2 17 17 O 1.21617 * 119.99857 * 175.14897 * 16 6 5 18 18 C 1.47251 * 120.00113 * 355.41940 * 16 6 5 19 19 N 1.30557 * 125.54383 * 5.78252 * 18 16 6 20 20 C 1.30700 * 115.90925 * 179.77743 * 19 18 16 21 21 C 1.34237 * 115.78336 * 0.52213 * 20 19 18 22 22 S 1.71062 * 109.08784 * 359.72036 * 21 20 19 23 23 H 1.09003 * 109.47476 * 299.99938 * 1 2 3 24 24 H 1.08996 * 109.47505 * 60.00071 * 1 2 3 25 25 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47059 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47242 * 299.99782 * 3 2 1 28 28 H 1.09003 * 109.46869 * 59.99690 * 3 2 1 29 29 H 1.08996 * 109.47748 * 290.98000 * 4 2 1 30 30 H 1.09001 * 109.47282 * 50.98848 * 4 2 1 31 31 H 1.09000 * 109.46950 * 170.98015 * 4 2 1 32 32 H 1.08999 * 109.47027 * 300.76334 * 5 2 1 33 33 H 1.08988 * 109.47240 * 180.75778 * 5 2 1 34 34 H 1.09003 * 109.47537 * 29.99635 * 7 6 5 35 35 H 1.09000 * 109.47453 * 150.00086 * 7 6 5 36 36 H 0.97007 * 119.99052 * 179.97438 * 11 10 8 37 37 H 1.08006 * 122.11009 * 180.22227 * 20 19 18 38 38 H 1.07996 * 125.45031 * 179.72165 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.5666 -2.1077 1.2402 7 6 0.2418 -2.4328 1.7745 8 6 0.3561 -2.7469 3.2439 9 1 1.3191 -2.7078 3.7312 10 6 -0.7689 -3.0843 3.9664 11 7 -1.9416 -3.1314 3.3730 12 14 -0.6271 -3.4742 5.7876 13 1 -0.0801 -2.2948 6.5053 14 1 -1.9698 -3.8050 6.3291 15 1 0.2815 -4.6336 5.9764 16 6 2.3498 -3.0839 0.7403 17 8 1.9952 -4.2449 0.8126 18 6 3.6378 -2.7452 0.1119 19 7 4.1748 -1.5558 0.0751 20 6 5.3301 -1.4693 -0.5299 21 6 5.8073 -2.6140 -1.0437 22 16 4.7006 -3.8772 -0.7188 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.8142 -1.7849 -1.1723 30 1 1.5511 -0.3089 -2.1319 31 1 3.1179 -0.5839 -1.3334 32 1 1.6655 -0.2154 2.1392 33 1 3.1298 -0.7095 1.2561 34 1 -0.4249 -1.5818 1.6356 35 1 -0.1598 -3.2987 1.2481 36 1 -2.7330 -3.3691 3.8812 37 1 5.8647 -0.5348 -0.6156 38 1 6.7405 -2.7202 -1.5767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618385582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:30 Heat of formation + Delta-G solvation = 27.681932 kcal Electronic energy + Delta-G solvation = -21137.676909 eV Core-core repulsion = 18108.129855 eV Total energy + Delta-G solvation = -3029.547054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35777 -38.55262 -36.92223 -33.85405 -32.40462 -30.65629 -27.82009 -26.95038 -26.69041 -26.26642 -25.08912 -22.92892 -21.02385 -19.21148 -18.81404 -17.50899 -16.59999 -16.07086 -15.45820 -15.24638 -15.02381 -14.32549 -14.07736 -13.86042 -13.50110 -13.29893 -13.05263 -12.55403 -12.32395 -12.06236 -11.78946 -11.51971 -11.27938 -11.19895 -11.08819 -10.93520 -10.73705 -10.56613 -10.34493 -10.16262 -10.11503 -9.69431 -9.47308 -9.43721 -8.93353 -8.81326 -8.38833 -7.60860 -6.01898 -4.05850 0.41991 1.29075 1.81407 2.57885 3.34643 3.38521 3.41876 3.71550 3.87075 4.37736 4.50541 5.05484 5.11248 5.25788 5.28601 5.32755 5.37278 5.47516 5.89465 5.91138 5.97175 6.02694 6.16633 6.23548 6.26945 6.37283 6.41966 6.59111 6.72647 6.78764 6.89249 7.10511 7.41246 7.52389 7.60067 7.93911 8.24992 8.34995 8.82218 9.01015 9.58210 11.06000 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.006476 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.294783 B = 4322.902056 C = 5277.718099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.137 4.137 5 C 0.095 3.905 6 N -0.559 5.559 7 C 0.239 3.761 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.576 3.424 17 O -0.530 6.530 18 C 0.013 3.987 19 N -0.418 5.418 20 C 0.022 3.978 21 C -0.295 4.295 22 S 0.222 5.778 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.172 0.828 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.299 6.310 -10.227 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.075 4.075 3 C -0.189 4.189 4 C -0.194 4.194 5 C -0.029 4.029 6 N -0.288 5.288 7 C 0.120 3.880 8 C -0.564 4.564 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.358 3.642 17 O -0.407 6.407 18 C -0.263 4.263 19 N -0.136 5.136 20 C -0.134 4.134 21 C -0.436 4.436 22 S 0.477 5.523 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.189 0.811 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.535 4.988 -10.101 16.854 hybrid contribution 0.591 0.773 0.878 1.310 sum 13.126 5.762 -9.223 17.046 Atomic orbital electron populations 1.22100 0.94706 1.02958 1.00721 1.20770 0.95710 0.95002 0.96028 1.21736 1.00745 0.95328 1.01125 1.22122 1.00959 0.99983 0.96360 1.22295 1.02672 0.81349 0.96579 1.48028 1.18371 1.06271 1.56113 1.19624 0.76693 0.97782 0.93881 1.21392 0.94079 1.47080 0.93886 0.92457 1.24904 0.95128 0.95274 0.98663 1.69921 0.98574 1.48488 1.36403 0.86568 0.77132 0.78913 0.84873 1.20255 1.21192 1.20202 1.16787 0.81608 0.86008 0.79808 1.90839 1.72558 1.18361 1.58980 1.28349 1.01801 0.91235 1.04901 1.67169 1.09089 1.21140 1.16182 1.21846 0.92935 0.99562 0.99019 1.26724 1.07525 0.98357 1.10969 1.84082 1.10138 1.11579 1.46485 0.92529 0.93906 0.91233 0.92669 0.93278 0.92845 0.93408 0.94128 0.91776 0.90933 0.86441 0.93133 0.94032 0.92682 0.81053 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 7.15 37.16 0.27 -2.20 16 2 C -0.07 -1.14 0.84 -154.51 -0.13 -1.27 16 3 C -0.13 -1.66 8.46 37.16 0.31 -1.35 16 4 C -0.14 -2.07 6.95 37.16 0.26 -1.81 16 5 C 0.09 1.71 4.47 -4.04 -0.02 1.69 16 6 N -0.56 -12.18 1.98 -176.40 -0.35 -12.53 16 7 C 0.24 6.20 4.06 -5.20 -0.02 6.17 16 8 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 12 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 C 0.58 12.50 6.35 -12.60 -0.08 12.42 16 17 O -0.53 -13.41 16.58 5.26 0.09 -13.32 16 18 C 0.01 0.21 5.74 -14.43 -0.08 0.13 16 19 N -0.42 -6.08 4.27 -11.51 -0.05 -6.13 16 20 C 0.02 0.25 10.70 -19.44 -0.21 0.04 16 21 C -0.29 -3.00 11.09 29.32 0.33 -2.67 16 22 S 0.22 2.94 23.04 -107.50 -2.48 0.46 16 23 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.35 5.63 -51.93 -0.29 1.06 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.83 5.47 -51.93 -0.28 0.55 16 30 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.06 0.90 5.42 -51.93 -0.28 0.62 16 32 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 33 H 0.12 2.00 4.73 -52.88 -0.25 1.75 16 34 H 0.05 1.30 5.49 -51.93 -0.28 1.02 16 35 H 0.04 1.21 7.49 -51.93 -0.39 0.82 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -31.51 314.00 -7.26 -38.77 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.13 Total: -0.83 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.20 Total: -2.45 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.34 Total: -44.35 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.48 Total: 0.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.51 -7.26 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618385582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.451 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds