Wall clock time and date at job start Tue Mar 31 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91425 * 2 1 4 4 C 1.31787 * 117.12323 * 180.02562 * 3 2 1 5 5 C 1.50706 * 122.74716 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47013 * 304.97523 * 5 4 3 7 7 O 1.21276 * 119.99898 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 180.02562 * 6 5 4 9 9 C 1.46492 * 119.99833 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47058 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47302 * 299.99960 * 10 9 8 12 12 C 1.53005 * 109.47157 * 60.00489 * 10 9 8 13 13 C 1.50702 * 109.47336 * 179.97438 * 10 9 8 14 14 H 1.08004 * 119.99799 * 357.01050 * 13 10 9 15 15 C 1.37879 * 120.00316 * 177.00480 * 13 10 9 16 16 N 1.31519 * 119.99753 * 5.55054 * 15 13 10 17 17 Si 1.86800 * 119.99913 * 185.54281 * 15 13 10 18 18 H 1.48494 * 109.46920 * 85.00756 * 17 15 13 19 19 H 1.48505 * 109.46638 * 205.00159 * 17 15 13 20 20 H 1.48498 * 109.47306 * 325.00465 * 17 15 13 21 21 C 1.33633 * 114.49834 * 359.97438 * 4 3 2 22 22 S 1.70972 * 124.91781 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47194 * 90.00226 * 1 2 3 24 24 H 1.09004 * 109.47178 * 210.00314 * 1 2 3 25 25 H 1.09006 * 109.47491 * 329.99869 * 1 2 3 26 26 H 1.08999 * 109.46604 * 64.97531 * 5 4 3 27 27 H 1.08999 * 109.46860 * 184.97503 * 5 4 3 28 28 H 0.97003 * 119.99934 * 359.97438 * 8 6 5 29 29 H 1.08993 * 109.47614 * 299.99701 * 9 8 6 30 30 H 1.08999 * 109.47139 * 59.99946 * 9 8 6 31 31 H 1.08997 * 109.46923 * 53.93482 * 11 10 9 32 32 H 1.09005 * 109.47124 * 173.93006 * 11 10 9 33 33 H 1.08990 * 109.47461 * 293.93226 * 11 10 9 34 34 H 1.08995 * 109.47200 * 59.99338 * 12 10 9 35 35 H 1.08998 * 109.47003 * 180.02562 * 12 10 9 36 36 H 1.09006 * 109.46313 * 299.99749 * 12 10 9 37 37 H 0.97003 * 119.99563 * 179.97438 * 16 15 13 38 38 H 1.08002 * 126.03343 * 179.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.2378 2.9366 -1.1635 7 8 3.3235 2.6819 -1.9185 8 7 4.9921 4.0352 -1.3651 9 6 4.7078 4.9214 -2.4964 10 6 5.7022 6.0842 -2.4958 11 6 5.5698 6.8678 -1.1884 12 6 7.1259 5.5379 -2.6211 13 6 5.4102 6.9956 -3.6599 14 1 4.6281 6.7429 -4.3606 15 6 6.1414 8.1520 -3.8306 16 7 7.1638 8.4057 -3.0432 17 14 5.6800 9.3582 -5.1803 18 1 4.6185 10.2715 -4.6861 19 1 6.8753 10.1509 -5.5654 20 1 5.1796 8.6110 -6.3620 21 6 3.9353 -0.4006 -0.0004 22 16 2.4856 -1.4019 0.0006 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5139 26 1 4.4367 2.5826 0.9316 27 1 5.5448 1.6354 -0.0897 28 1 5.7231 4.2391 -0.7610 29 1 4.8017 4.3632 -3.4278 30 1 3.6937 5.3110 -2.4069 31 1 5.6749 6.1864 -0.3442 32 1 6.3490 7.6286 -1.1403 33 1 4.5915 7.3467 -1.1492 34 1 7.2201 4.9797 -3.5525 35 1 7.8343 6.3663 -2.6202 36 1 7.3373 4.8785 -1.7793 37 1 7.6785 9.2191 -3.1635 38 1 4.9545 -0.7580 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701297601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:52 Heat of formation + Delta-G solvation = -4.282624 kcal Electronic energy + Delta-G solvation = -19657.750745 eV Core-core repulsion = 16626.817603 eV Total energy + Delta-G solvation = -3030.933142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19393 -38.75785 -36.28107 -33.23410 -33.08439 -30.96304 -29.60140 -27.91855 -25.71313 -25.53885 -24.77163 -22.90404 -20.30945 -19.66098 -18.77272 -17.77363 -16.72560 -15.74580 -15.60419 -15.06682 -14.81055 -14.71341 -14.47233 -13.74037 -13.37466 -13.24793 -13.00305 -12.79180 -12.51860 -12.27683 -12.15825 -11.97867 -11.47658 -11.32706 -11.16741 -10.83944 -10.68072 -10.35674 -10.19873 -9.61643 -9.60221 -9.51849 -9.39527 -9.22273 -8.79072 -8.70211 -8.41358 -8.24818 -6.01332 -4.09888 0.66647 1.30583 1.65094 2.76540 3.15578 3.30080 3.36334 3.40053 3.88206 3.99889 4.42205 4.75593 5.02516 5.14507 5.18102 5.25845 5.31474 5.36009 5.40003 5.68988 5.72412 6.09888 6.27886 6.37003 6.53995 6.82462 6.83908 6.95884 7.04166 7.09063 7.37900 7.57566 7.71581 7.79376 8.01381 8.09927 8.19162 8.40479 8.79718 8.90987 9.55433 11.00727 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.003200 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.685349 B = 8748.079192 C = 9101.736485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.444 5.444 4 C 0.098 3.902 5 C -0.071 4.071 6 C 0.508 3.492 7 O -0.535 6.535 8 N -0.720 5.720 9 C 0.134 3.866 10 C 0.056 3.944 11 C -0.128 4.128 12 C -0.130 4.130 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.261 4.261 22 S 0.096 5.904 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.397 0.603 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.007 0.993 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -17.175 9.596 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.227 4.227 3 N -0.158 5.158 4 C -0.035 4.035 5 C -0.114 4.114 6 C 0.292 3.708 7 O -0.412 6.412 8 N -0.371 5.371 9 C 0.012 3.988 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.188 4.188 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.399 4.399 22 S 0.350 5.650 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.232 0.768 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.564 -17.770 9.058 20.998 hybrid contribution 0.874 1.497 -0.499 1.804 sum -5.690 -16.273 8.559 19.247 Atomic orbital electron populations 1.20431 0.85299 1.03928 1.03996 1.27037 1.01772 0.90485 1.03365 1.66005 1.04377 1.31073 1.14320 1.19618 0.89997 0.93128 1.00730 1.20297 0.97670 0.93606 0.99828 1.20158 0.82692 0.81868 0.86057 1.90694 1.30192 1.73232 1.47046 1.46276 1.34268 1.24964 1.31612 1.21660 0.99894 0.90838 0.86444 1.18356 0.90813 0.90331 0.94998 1.21797 1.01544 1.00160 0.95118 1.21846 1.00604 0.99798 0.96503 1.20984 1.18249 1.05463 1.09890 0.92477 1.24876 0.94601 0.97798 0.96161 1.69829 1.18103 1.25753 1.38733 0.86600 0.77894 0.81222 0.82238 1.20617 1.21342 1.19973 1.26712 1.03032 0.95590 1.14595 1.83784 0.98237 1.13473 1.69512 0.89535 0.90318 0.89244 0.87379 0.87509 0.76817 0.92936 0.92815 0.97410 0.90053 0.95210 0.95509 0.89614 0.97546 0.93033 0.80609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.46 36.00 0.38 -0.30 16 2 C 0.05 0.66 7.39 -13.46 -0.10 0.56 16 3 N -0.44 -6.99 9.68 -8.06 -0.08 -7.06 16 4 C 0.10 1.39 5.63 -84.22 -0.47 0.91 16 5 C -0.07 -0.93 6.19 -29.03 -0.18 -1.10 16 6 C 0.51 9.08 7.80 -10.98 -0.09 8.99 16 7 O -0.53 -11.84 15.45 5.56 0.09 -11.75 16 8 N -0.72 -12.94 4.90 -60.30 -0.30 -13.23 16 9 C 0.13 2.92 4.50 -4.05 -0.02 2.90 16 10 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 11 C -0.13 -2.91 8.03 37.16 0.30 -2.61 16 12 C -0.13 -2.93 8.11 37.16 0.30 -2.63 16 13 C -0.51 -13.47 8.01 -34.44 -0.28 -13.75 16 14 H 0.06 1.54 7.75 -52.48 -0.41 1.13 16 15 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 16 N -0.89 -23.75 9.45 55.43 0.52 -23.23 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.26 -2.99 11.07 29.12 0.32 -2.67 16 22 S 0.10 0.99 23.18 -107.50 -2.49 -1.51 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.11 1.04 8.03 -51.93 -0.42 0.62 16 28 H 0.40 6.27 6.16 -40.82 -0.25 6.02 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.01 0.14 6.71 -51.93 -0.35 -0.21 16 32 H 0.08 2.02 6.25 -51.93 -0.32 1.69 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.09 2.14 6.10 -51.93 -0.32 1.82 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.18 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 325.72 15.07 4.91 4.91 Total: -1.00 -31.68 325.72 -7.73 -39.41 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.36 Total: 3.34 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 0.00 Total: -6.78 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.15 Total: -43.52 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.68 -7.73 -39.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701297601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.128 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds