Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.59126 * 2 1 4 4 C 1.53176 * 109.58728 * 239.71083 * 2 1 3 5 5 C 1.52960 * 109.58457 * 170.25538 * 4 2 1 6 6 C 1.52349 * 108.86528 * 51.74372 * 5 4 2 7 7 C 1.33308 * 121.76052 * 341.89713 * 6 5 4 8 8 S 1.76556 * 106.54002 * 180.02562 * 7 6 5 9 9 C 1.72214 * 94.66459 * 359.97438 * 8 7 6 10 10 O 1.21829 * 127.08753 * 180.02562 * 9 8 7 11 11 N 1.33897 * 105.83371 * 359.97438 * 9 8 7 12 12 C 1.46503 * 120.92552 * 180.02562 * 11 9 8 13 13 N 1.46499 * 109.47392 * 272.22583 * 12 11 9 14 14 C 1.46496 * 119.99548 * 87.70023 * 13 12 11 15 15 C 1.36935 * 120.00428 * 267.70181 * 13 12 11 16 16 H 1.08000 * 119.99712 * 350.51272 * 15 13 12 17 17 C 1.38806 * 120.00038 * 170.50875 * 15 13 12 18 18 N 1.31614 * 120.00265 * 5.97746 * 17 15 13 19 19 Si 1.86803 * 119.99873 * 185.97598 * 17 15 13 20 20 H 1.48491 * 109.47101 * 59.99926 * 19 17 15 21 21 H 1.48498 * 109.46945 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46889 * 300.00033 * 19 17 15 23 23 C 1.50352 * 126.48758 * 359.76067 * 7 6 5 24 24 H 1.08998 * 109.47163 * 180.28961 * 1 2 3 25 25 H 1.09009 * 109.46873 * 300.28600 * 1 2 3 26 26 H 1.09000 * 109.47653 * 60.28421 * 1 2 3 27 27 H 1.08998 * 109.44901 * 50.22960 * 4 2 1 28 28 H 1.08999 * 109.43731 * 290.28538 * 4 2 1 29 29 H 1.08989 * 109.57201 * 291.93293 * 5 4 2 30 30 H 1.08995 * 109.67258 * 171.61907 * 5 4 2 31 31 H 1.09002 * 109.47085 * 32.23328 * 12 11 9 32 32 H 1.09007 * 109.46448 * 152.22881 * 12 11 9 33 33 H 1.09003 * 109.47401 * 5.24062 * 14 13 12 34 34 H 1.08997 * 109.47112 * 125.23814 * 14 13 12 35 35 H 1.09002 * 109.47565 * 245.23748 * 14 13 12 36 36 H 0.96995 * 120.00486 * 180.02562 * 18 17 15 37 37 H 1.09006 * 109.61404 * 104.60567 * 23 7 6 38 38 H 1.08996 * 109.62574 * 225.15397 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7279 -1.2461 5 6 3.5535 -0.5207 -1.3751 6 6 4.2162 -0.8918 -0.0544 7 6 3.5216 -0.9744 1.0804 8 16 4.6716 -1.4248 2.3420 9 6 6.0277 -1.4803 1.2819 10 8 7.1789 -1.7506 1.5752 11 7 5.5562 -1.1663 0.0687 12 6 6.4451 -1.1160 -1.0947 13 7 7.0325 0.2217 -1.2031 14 6 8.2722 0.5372 -0.4892 15 6 6.4227 1.1771 -1.9716 16 1 5.6000 0.9068 -2.6169 17 6 6.8620 2.4928 -1.9210 18 7 7.9367 2.8017 -1.2268 19 14 5.9279 3.8252 -2.8385 20 1 4.5344 3.8924 -2.3299 21 1 6.5966 5.1340 -2.6262 22 1 5.9107 3.5082 -4.2892 23 6 2.0483 -0.7250 1.2470 24 1 -0.3633 -1.0276 0.0052 25 1 -0.3633 0.5183 0.8875 26 1 -0.3634 0.5094 -0.8925 27 1 1.5457 -0.3294 -2.1301 28 1 1.8293 -1.7930 -1.1581 29 1 3.7602 0.5241 -1.6064 30 1 3.9442 -1.1551 -2.1706 31 1 7.2393 -1.8533 -0.9773 32 1 5.8750 -1.3368 -1.9972 33 1 8.6559 -0.3642 -0.0113 34 1 9.0112 0.9168 -1.1948 35 1 8.0722 1.2937 0.2695 36 1 8.2434 3.7211 -1.1911 37 1 1.5266 -1.6756 1.3586 38 1 1.8791 -0.1060 2.1280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728048844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = 8.879433 kcal Electronic energy + Delta-G solvation = -21071.466941 eV Core-core repulsion = 18041.104549 eV Total energy + Delta-G solvation = -3030.362392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28823 -38.02786 -36.13085 -35.09375 -31.68028 -31.11521 -30.26175 -27.07248 -26.23434 -25.65200 -23.38450 -22.32295 -21.35780 -20.33302 -18.69723 -17.76175 -17.00806 -16.16169 -15.77541 -14.99805 -14.72591 -14.45818 -14.14132 -13.67189 -13.42491 -13.35388 -13.10069 -13.05002 -12.72726 -12.08118 -11.91658 -11.70539 -11.48550 -11.44771 -11.16914 -10.86977 -10.74142 -10.66615 -10.47913 -10.26985 -10.23157 -10.06233 -9.93132 -9.37531 -8.82244 -8.74810 -7.32979 -7.23444 -5.88512 -3.35814 1.62991 1.97707 2.37335 2.90903 3.24193 3.29530 3.32076 3.57678 4.29190 4.77129 4.85239 4.89027 5.05987 5.28285 5.32657 5.40510 5.51862 5.60459 5.66462 5.68116 5.75339 5.81244 5.86595 5.97556 6.06543 6.11228 6.20321 6.26687 6.40740 6.48059 6.77882 6.88784 7.45783 7.54046 7.58696 7.77668 8.09102 8.13333 8.98418 9.57850 10.01658 11.07983 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.008289 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.041269 B = 3377.134349 C = 4799.087461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.058 4.058 6 C 0.136 3.864 7 C -0.238 4.238 8 S -0.063 6.063 9 C 0.496 3.504 10 O -0.489 6.489 11 N -0.534 5.534 12 C 0.329 3.671 13 N -0.577 5.577 14 C 0.160 3.840 15 C -0.271 4.271 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.280 1.280 23 C -0.015 4.015 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.007 0.993 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.256 0.744 37 H 0.071 0.929 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.407 -6.842 0.444 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.098 4.098 6 C 0.023 3.977 7 C -0.358 4.358 8 S 0.180 5.820 9 C 0.176 3.824 10 O -0.370 6.370 11 N -0.260 5.260 12 C 0.118 3.882 13 N -0.297 5.297 14 C 0.016 3.984 15 C -0.400 4.400 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.543 5.543 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.207 1.207 23 C -0.054 4.054 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.492 -7.036 1.899 14.462 hybrid contribution -0.149 1.189 -1.600 1.999 sum -12.641 -5.847 0.298 13.931 Atomic orbital electron populations 1.21798 0.94834 1.01717 1.01756 1.21234 0.95276 1.00298 0.94379 0.90389 1.21592 0.94243 1.00875 0.97973 1.20787 0.93871 1.03859 0.91273 1.20290 0.83236 0.97135 0.97040 1.23239 0.99296 1.20185 0.93050 1.84506 1.03236 1.77181 1.17058 1.21513 0.92723 0.82411 0.85719 1.90874 1.17028 1.53244 1.75841 1.49069 1.07987 1.57751 1.11168 1.21671 0.90658 0.89183 0.86662 1.44763 1.24084 1.08740 1.52075 1.21189 0.86254 0.95038 0.95893 1.19295 1.14642 0.87957 1.18113 0.90200 1.25055 0.97383 0.97610 0.98864 1.70250 1.22757 1.18235 1.43077 0.86269 0.79474 0.81202 0.79263 1.20626 1.21341 1.20658 1.19815 0.87398 1.00143 0.98091 0.92665 0.92651 0.92522 0.90958 0.91585 0.88123 0.90143 0.90612 0.90041 0.97489 0.93168 0.93878 0.93307 0.91030 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.15 0.34 -0.90 16 2 C -0.09 -1.03 2.75 -90.39 -0.25 -1.28 16 3 H 0.08 1.00 8.12 -51.93 -0.42 0.57 16 4 C -0.11 -1.21 5.16 -26.66 -0.14 -1.35 16 5 C -0.06 -0.84 5.20 -27.08 -0.14 -0.98 16 6 C 0.14 2.35 6.59 -81.03 -0.53 1.82 16 7 C -0.24 -3.84 6.41 -36.20 -0.23 -4.07 16 8 S -0.06 -1.14 22.96 -107.50 -2.47 -3.60 16 9 C 0.50 10.63 8.26 53.66 0.44 11.07 16 10 O -0.49 -11.72 16.92 5.07 0.09 -11.63 16 11 N -0.53 -10.68 2.86 -119.74 -0.34 -11.02 16 12 C 0.33 6.72 5.80 -63.75 -0.37 6.35 16 13 N -0.58 -14.14 3.17 -184.86 -0.59 -14.72 16 14 C 0.16 4.17 9.00 59.84 0.54 4.71 16 15 C -0.27 -6.87 9.45 -15.06 -0.14 -7.01 16 16 H 0.08 1.86 6.73 -52.49 -0.35 1.51 16 17 C 0.01 0.27 5.46 -17.43 -0.10 0.18 16 18 N -0.90 -25.42 9.49 55.49 0.53 -24.90 16 19 Si 0.91 20.61 29.56 -169.99 -5.02 15.59 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.01 -0.18 5.60 -27.91 -0.16 -0.34 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 28 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.10 1.67 6.99 -51.94 -0.36 1.31 16 30 H 0.08 1.07 6.88 -51.93 -0.36 0.72 16 31 H 0.08 1.54 7.61 -51.93 -0.40 1.14 16 32 H 0.08 1.46 6.29 -51.92 -0.33 1.13 16 33 H 0.01 0.16 7.17 -51.93 -0.37 -0.21 16 34 H 0.05 1.37 7.14 -51.93 -0.37 1.00 16 35 H 0.04 1.24 6.98 -51.93 -0.36 0.88 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -29.87 314.24 -9.22 -39.09 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.41 Total: -1.73 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.73 Total: 8.19 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.40 Total: -50.64 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.47 Total: -3.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.87 -9.22 -39.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728048844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.967 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds