Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.70891 * 2 1 4 4 C 1.53177 * 109.58737 * 120.36349 * 2 1 3 5 5 C 1.52956 * 109.57788 * 189.60047 * 4 2 1 6 6 C 1.52352 * 108.79916 * 308.02999 * 5 4 2 7 7 C 1.33309 * 121.75608 * 18.60303 * 6 5 4 8 8 S 1.76559 * 106.53394 * 179.66984 * 7 6 5 9 9 C 1.72216 * 94.66664 * 359.74206 * 8 7 6 10 10 O 1.21826 * 127.08636 * 179.97438 * 9 8 7 11 11 N 1.33896 * 105.83067 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.92277 * 180.02562 * 11 9 8 13 13 N 1.46500 * 109.47360 * 90.02330 * 12 11 9 14 14 C 1.46501 * 120.00184 * 270.00121 * 13 12 11 15 15 C 1.36937 * 119.99938 * 89.99751 * 13 12 11 16 16 H 1.07997 * 120.00613 * 218.33204 * 15 13 12 17 17 C 1.38821 * 119.99915 * 38.33160 * 15 13 12 18 18 N 1.31620 * 119.99817 * 24.06712 * 17 15 13 19 19 Si 1.86799 * 120.00274 * 203.78857 * 17 15 13 20 20 H 1.48509 * 109.46792 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47150 * 119.99795 * 19 17 15 22 22 H 1.48494 * 109.47196 * 240.00370 * 19 17 15 23 23 C 1.50343 * 126.48718 * 359.41437 * 7 6 5 24 24 H 1.09005 * 109.47122 * 180.35943 * 1 2 3 25 25 H 1.08998 * 109.47210 * 300.36161 * 1 2 3 26 26 H 1.08999 * 109.46836 * 60.35953 * 1 2 3 27 27 H 1.08996 * 109.45536 * 309.63843 * 4 2 1 28 28 H 1.09011 * 109.45252 * 69.59410 * 4 2 1 29 29 H 1.09000 * 109.57049 * 68.06031 * 5 4 2 30 30 H 1.09000 * 109.57556 * 188.30669 * 5 4 2 31 31 H 1.09001 * 109.47255 * 330.02224 * 12 11 9 32 32 H 1.08995 * 109.47238 * 210.02544 * 12 11 9 33 33 H 1.08999 * 109.46869 * 305.15848 * 14 13 12 34 34 H 1.08993 * 109.47003 * 65.16541 * 14 13 12 35 35 H 1.09001 * 109.46833 * 185.16338 * 14 13 12 36 36 H 0.97001 * 120.00023 * 5.49131 * 18 17 15 37 37 H 1.08995 * 109.62289 * 135.44830 * 23 7 6 38 38 H 1.09006 * 109.62020 * 255.99408 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0435 -0.7295 1.2452 5 6 3.5541 -0.5254 1.3723 6 6 4.2133 -0.9030 0.0517 7 6 3.5182 -0.9782 -1.0833 8 16 4.6657 -1.4314 -2.3462 9 6 6.0231 -1.4896 -1.2879 10 8 7.1732 -1.7625 -1.5826 11 7 5.5539 -1.1732 -0.0744 12 6 6.4447 -1.1232 1.0876 13 7 6.9931 0.2284 1.2247 14 6 8.2477 0.5812 0.5556 15 6 6.3330 1.1619 1.9782 16 1 6.2966 2.1911 1.6528 17 6 5.7104 0.7855 3.1605 18 7 6.1169 -0.2873 3.8057 19 14 4.3009 1.8058 3.8399 20 1 4.0420 2.9559 2.9367 21 1 3.0805 0.9649 3.9319 22 1 4.6593 2.3077 5.1908 23 6 2.0444 -0.7305 -1.2470 24 1 -0.3634 -1.0277 0.0064 25 1 -0.3633 0.5194 0.8867 26 1 -0.3633 0.5082 -0.8932 27 1 1.5475 -0.3306 2.1300 28 1 1.8276 -1.7943 1.1570 29 1 3.7632 0.5190 1.6037 30 1 3.9427 -1.1606 2.1683 31 1 7.2598 -1.8339 0.9514 32 1 5.8844 -1.3808 1.9863 33 1 9.0263 -0.1231 0.8487 34 1 8.1077 0.5394 -0.5245 35 1 8.5426 1.5899 0.8449 36 1 6.9009 -0.7694 3.4994 37 1 1.8726 -0.1139 -2.1292 38 1 1.5231 -1.6817 -1.3550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728048845.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -1.029282 kcal Electronic energy + Delta-G solvation = -21491.932376 eV Core-core repulsion = 18461.140309 eV Total energy + Delta-G solvation = -3030.792066 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32964 -38.00564 -36.28361 -35.19927 -31.71509 -30.80497 -30.57441 -27.39462 -25.92216 -25.47938 -23.51976 -22.23209 -21.33479 -20.33719 -18.70132 -17.75698 -17.64118 -16.18827 -15.60755 -15.01313 -14.50580 -14.25335 -14.14638 -13.90441 -13.58818 -13.35775 -13.11587 -13.09883 -12.67815 -12.47226 -11.94269 -11.68370 -11.52638 -11.47032 -11.21529 -11.03968 -10.80171 -10.57754 -10.37864 -10.35358 -10.21698 -9.94950 -9.67880 -9.43831 -8.85693 -8.70494 -7.27458 -7.23941 -6.39366 -3.74983 1.58215 1.95275 2.33986 2.85939 3.25266 3.31427 3.43819 3.58067 4.28848 4.88034 4.94733 4.99022 4.99637 5.20734 5.27350 5.47497 5.63829 5.71871 5.74928 5.77630 5.86734 5.91400 5.97762 6.16128 6.21984 6.27739 6.32352 6.35516 6.44893 6.48525 6.57591 6.66681 6.68188 6.93365 7.54861 7.83490 8.02286 8.22921 8.72744 9.42904 9.88903 10.80477 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.011009 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.099631 B = 2542.782804 C = 4317.095470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.059 4.059 6 C 0.147 3.853 7 C -0.243 4.243 8 S -0.055 6.055 9 C 0.491 3.509 10 O -0.494 6.494 11 N -0.528 5.528 12 C 0.319 3.681 13 N -0.580 5.580 14 C 0.119 3.881 15 C -0.361 4.361 16 H 0.056 0.944 17 C -0.007 4.007 18 N -0.898 5.898 19 Si 1.049 2.951 20 H -0.285 1.285 21 H -0.277 1.277 22 H -0.290 1.290 23 C -0.014 4.014 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.018 0.982 34 H 0.016 0.984 35 H 0.053 0.947 36 H 0.271 0.729 37 H 0.072 0.928 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -1.111 -5.399 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.098 4.098 6 C 0.034 3.966 7 C -0.363 4.363 8 S 0.188 5.812 9 C 0.172 3.828 10 O -0.376 6.376 11 N -0.252 5.252 12 C 0.109 3.891 13 N -0.301 5.301 14 C -0.026 4.026 15 C -0.490 4.490 16 H 0.073 0.927 17 C -0.211 4.211 18 N -0.536 5.536 19 Si 0.877 3.123 20 H -0.211 1.211 21 H -0.203 1.203 22 H -0.217 1.217 23 C -0.053 4.053 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.838 -1.403 -5.641 12.298 hybrid contribution 1.637 0.286 0.018 1.662 sum -9.200 -1.117 -5.623 10.840 Atomic orbital electron populations 1.21801 0.94807 1.01785 1.01704 1.21276 0.95321 1.00175 0.94416 0.90427 1.21656 0.94622 1.00892 0.97911 1.20911 0.93379 1.04297 0.91238 1.20342 0.82758 0.96161 0.97289 1.23269 0.99516 1.20731 0.92752 1.84413 1.02957 1.77258 1.16594 1.21379 0.92823 0.82761 0.85872 1.90864 1.17262 1.53534 1.75968 1.48203 1.08290 1.57605 1.11104 1.21804 0.91291 0.88498 0.87491 1.44321 1.20969 1.10259 1.54599 1.21242 0.87546 0.98825 0.95018 1.20002 1.34511 0.91780 1.02730 0.92652 1.26038 1.03146 1.00017 0.91918 1.70782 1.25097 1.20228 1.37482 0.83850 0.76502 0.75735 0.76174 1.21082 1.20251 1.21663 1.19844 0.87197 1.00192 0.98095 0.92617 0.92442 0.92702 0.90782 0.91545 0.88146 0.88951 0.91392 0.86842 0.96310 0.96597 0.92815 0.91764 0.90987 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.17 37.16 0.34 -1.05 16 2 C -0.09 -1.15 2.77 -90.32 -0.25 -1.40 16 3 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 4 C -0.11 -1.59 5.15 -26.66 -0.14 -1.73 16 5 C -0.06 -1.08 3.91 -27.08 -0.11 -1.18 16 6 C 0.15 2.83 6.59 -81.03 -0.53 2.29 16 7 C -0.24 -4.14 6.41 -36.20 -0.23 -4.38 16 8 S -0.06 -1.00 22.96 -107.50 -2.47 -3.47 16 9 C 0.49 10.69 8.26 53.66 0.44 11.13 16 10 O -0.49 -11.82 17.42 5.08 0.09 -11.73 16 11 N -0.53 -11.37 2.86 -119.75 -0.34 -11.71 16 12 C 0.32 7.34 4.99 -63.75 -0.32 7.02 16 13 N -0.58 -14.20 2.83 -184.86 -0.52 -14.72 16 14 C 0.12 2.69 10.75 59.85 0.64 3.34 16 15 C -0.36 -9.28 8.59 -15.06 -0.13 -9.41 16 16 H 0.06 1.49 7.93 -52.49 -0.42 1.07 16 17 C -0.01 -0.17 3.37 -17.43 -0.06 -0.23 16 18 N -0.90 -23.61 12.27 55.49 0.68 -22.93 16 19 Si 1.05 22.32 27.22 -169.99 -4.63 17.69 16 20 H -0.29 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.01 -0.18 5.59 -27.85 -0.16 -0.34 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 28 H 0.07 0.87 8.11 -51.92 -0.42 0.44 16 29 H 0.10 2.03 4.30 -51.93 -0.22 1.81 16 30 H 0.09 1.84 6.73 -51.93 -0.35 1.49 16 31 H 0.07 1.57 7.69 -51.93 -0.40 1.17 16 32 H 0.11 2.70 3.87 -51.93 -0.20 2.50 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.05 1.17 7.90 -51.93 -0.41 0.76 16 36 H 0.27 7.33 7.11 -40.82 -0.29 7.04 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.85 8.10 -51.93 -0.42 0.42 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -27.70 309.17 -8.33 -36.03 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.30 Total: 2.11 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.49 Total: 4.08 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.18 Total: -49.36 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.63 Total: 17.69 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.47 Total: -3.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.70 -8.33 -36.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728048845.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.001 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds