Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.91787 * 2 1 4 4 C 1.31781 * 117.12843 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.75073 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47358 * 305.02390 * 5 4 3 7 7 C 1.50697 * 109.47059 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00181 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99611 * 180.02562 * 7 6 5 10 10 C 1.46504 * 120.00513 * 359.97438 * 9 7 6 11 11 C 1.46504 * 119.99967 * 179.97438 * 9 7 6 12 12 H 1.09004 * 109.46912 * 359.97438 * 11 9 7 13 13 C 1.52998 * 109.47160 * 239.99712 * 11 9 7 14 14 C 1.50696 * 109.47320 * 119.99587 * 11 9 7 15 15 H 1.08006 * 120.00263 * 5.62560 * 14 11 9 16 16 C 1.37875 * 120.00299 * 185.61989 * 14 11 9 17 17 N 1.31511 * 120.00157 * 196.97108 * 16 14 11 18 18 Si 1.86798 * 119.99893 * 17.24348 * 16 14 11 19 19 H 1.48496 * 109.47439 * 179.72791 * 18 16 14 20 20 H 1.48507 * 109.47069 * 299.72536 * 18 16 14 21 21 H 1.48497 * 109.47361 * 59.72470 * 18 16 14 22 22 C 1.33641 * 114.49516 * 0.23538 * 4 3 2 23 23 S 1.70975 * 124.91459 * 180.02562 * 2 1 3 24 24 H 1.08993 * 109.47302 * 89.99033 * 1 2 3 25 25 H 1.08994 * 109.46770 * 209.99835 * 1 2 3 26 26 H 1.09008 * 109.46880 * 329.98945 * 1 2 3 27 27 H 1.09000 * 109.46802 * 185.02820 * 5 4 3 28 28 H 1.08998 * 109.47400 * 65.03002 * 5 4 3 29 29 H 1.09003 * 109.46638 * 59.99940 * 6 5 4 30 30 H 1.09000 * 109.46917 * 300.00353 * 6 5 4 31 31 H 1.08999 * 109.47383 * 270.00539 * 10 9 7 32 32 H 1.09000 * 109.46583 * 30.00556 * 10 9 7 33 33 H 1.08995 * 109.47202 * 150.00141 * 10 9 7 34 34 H 1.08996 * 109.47559 * 185.88044 * 13 11 9 35 35 H 1.08995 * 109.47228 * 305.88227 * 13 11 9 36 36 H 1.08997 * 109.47120 * 65.88201 * 13 11 9 37 37 H 0.96996 * 120.00531 * 355.07916 * 17 16 14 38 38 H 1.08002 * 126.03048 * 179.76034 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2326 2.9501 -1.1825 7 6 5.2125 4.0949 -1.1834 8 8 6.0651 4.1641 -0.3237 9 7 5.1408 5.0425 -2.1392 10 6 4.1106 4.9593 -3.1775 11 6 6.0931 6.1558 -2.1398 12 1 6.7778 6.0487 -1.2984 13 6 5.3327 7.4774 -2.0130 14 6 6.8746 6.1476 -3.4282 15 1 6.6205 5.4467 -4.2096 16 6 7.9141 7.0351 -3.6097 17 7 8.3765 7.2679 -4.8186 18 14 8.6706 7.9010 -2.1376 19 1 9.7669 8.7913 -2.5965 20 1 7.6313 8.7093 -1.4507 21 1 9.2151 6.8908 -1.1951 22 6 3.9354 -0.4006 -0.0060 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 0.0002 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 5.5448 1.6352 -0.0916 28 1 4.4376 2.5829 0.9304 29 1 3.2185 3.3394 -1.0921 30 1 4.3258 2.3917 -2.1140 31 1 4.4941 4.3915 -4.0252 32 1 3.2288 4.4605 -2.7752 33 1 3.8422 5.9638 -3.5044 34 1 6.0293 8.3090 -2.1182 35 1 4.5750 7.5371 -2.7943 36 1 4.8519 7.5276 -1.0360 37 1 8.0357 6.7635 -5.5738 38 1 4.9545 -0.7580 -0.0110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733147752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = -0.405561 kcal Electronic energy + Delta-G solvation = -19655.393319 eV Core-core repulsion = 16624.628300 eV Total energy + Delta-G solvation = -3030.765020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.17285 -39.09746 -35.55794 -33.89959 -32.80108 -31.40840 -29.99105 -28.43613 -26.25270 -25.32734 -24.60158 -22.64777 -20.66070 -19.84276 -18.21200 -17.64172 -17.48533 -16.42601 -15.56334 -15.49162 -15.06659 -14.92496 -13.92735 -13.75188 -13.64631 -13.30121 -13.07095 -12.81983 -12.68773 -12.45928 -12.24639 -12.11172 -11.76779 -11.69228 -11.46878 -11.30900 -11.22981 -10.87178 -10.44861 -9.94045 -9.80535 -9.73251 -9.58770 -9.13619 -9.00702 -8.79583 -8.30574 -7.72704 -6.47262 -4.11675 0.53428 1.17129 1.54099 2.62570 3.32609 3.39584 3.49979 3.62796 3.83373 3.92877 4.47259 4.71334 4.95087 5.03959 5.11032 5.13189 5.21086 5.25332 5.32219 5.51490 5.56591 5.63904 5.82391 5.95108 6.00311 6.14169 6.22364 6.26296 6.41320 6.45889 6.63557 6.99035 7.18990 7.47879 7.60120 7.88321 8.31465 8.38989 8.79954 8.99193 9.56822 10.90250 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.003381 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.564641 B = 8280.805896 C = 8469.337457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.467 5.467 4 C 0.079 3.921 5 C -0.029 4.029 6 C -0.129 4.129 7 C 0.504 3.496 8 O -0.558 6.558 9 N -0.588 5.588 10 C 0.089 3.911 11 C 0.233 3.767 12 H 0.055 0.945 13 C -0.161 4.161 14 C -0.609 4.609 15 H 0.059 0.941 16 C 0.035 3.965 17 N -0.903 5.903 18 Si 1.041 2.959 19 H -0.284 1.284 20 H -0.273 1.273 21 H -0.279 1.279 22 C -0.258 4.258 23 S 0.100 5.900 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.026 0.974 37 H 0.267 0.733 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.952 -15.721 8.455 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.229 4.229 3 N -0.183 5.183 4 C -0.053 4.053 5 C -0.069 4.069 6 C -0.169 4.169 7 C 0.292 3.708 8 O -0.437 6.437 9 N -0.319 5.319 10 C -0.055 4.055 11 C 0.131 3.869 12 H 0.073 0.927 13 C -0.220 4.220 14 C -0.647 4.647 15 H 0.078 0.922 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.869 3.131 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.205 1.205 22 C -0.396 4.396 23 S 0.354 5.646 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.833 -15.096 9.305 23.119 hybrid contribution -0.556 -0.594 -0.766 1.117 sum -15.389 -15.690 8.539 23.578 Atomic orbital electron populations 1.20443 0.85198 1.04166 1.03935 1.27063 1.01752 0.90895 1.03236 1.66090 1.04650 1.31476 1.16056 1.20410 0.90027 0.94451 1.00371 1.19957 0.95604 0.91734 0.99601 1.21559 1.00159 0.95605 0.99589 1.20445 0.85273 0.83427 0.81681 1.90628 1.37891 1.77058 1.38165 1.47952 1.32302 1.25361 1.26275 1.21560 0.89910 1.02675 0.91379 1.19182 0.87256 0.81275 0.99205 0.92747 1.22517 1.00835 1.00152 0.98446 1.22179 1.18161 1.23285 1.01108 0.92240 1.25690 0.94326 0.95691 1.01355 1.70875 1.46460 1.37494 0.98832 0.84104 0.76895 0.76915 0.75184 1.20993 1.19942 1.20460 1.26851 1.03068 0.95608 1.14097 1.83891 0.98375 1.13141 1.69165 0.89537 0.90197 0.89211 0.89379 0.89306 0.88644 0.89655 0.93283 0.92574 0.90933 0.91617 0.93404 0.95493 0.92288 0.80468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.12 16 2 C 0.05 0.50 7.39 -13.46 -0.10 0.40 16 3 N -0.47 -6.04 10.34 -8.06 -0.08 -6.13 16 4 C 0.08 1.01 6.08 -84.23 -0.51 0.50 16 5 C -0.03 -0.41 5.00 -27.88 -0.14 -0.55 16 6 C -0.13 -1.98 4.15 -27.88 -0.12 -2.10 16 7 C 0.50 10.33 7.67 -10.99 -0.08 10.25 16 8 O -0.56 -13.31 15.31 5.56 0.09 -13.22 16 9 N -0.59 -12.60 2.75 -175.26 -0.48 -13.09 16 10 C 0.09 1.54 9.43 59.85 0.56 2.10 16 11 C 0.23 5.78 2.22 -69.08 -0.15 5.63 16 12 H 0.05 1.48 5.56 -51.93 -0.29 1.19 16 13 C -0.16 -3.59 8.96 37.16 0.33 -3.26 16 14 C -0.61 -17.13 8.68 -34.44 -0.30 -17.43 16 15 H 0.06 1.78 7.75 -52.48 -0.41 1.37 16 16 C 0.04 1.01 5.30 -17.82 -0.09 0.92 16 17 N -0.90 -27.57 13.70 55.43 0.76 -26.81 16 18 Si 1.04 25.75 26.29 -169.99 -4.47 21.28 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.20 5.74 56.52 0.32 -5.88 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.26 -2.81 11.07 29.12 0.32 -2.48 16 23 S 0.10 0.90 23.18 -107.50 -2.49 -1.59 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.09 1.25 7.98 -51.93 -0.41 0.83 16 28 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 29 H 0.10 1.38 7.34 -51.93 -0.38 1.00 16 30 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 31 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.07 1.26 6.33 -51.93 -0.33 0.93 16 34 H 0.07 1.51 4.85 -51.93 -0.25 1.26 16 35 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 38 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -33.65 324.26 -7.04 -40.69 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.34 Total: 0.11 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.10 Total: -6.14 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.19 Total: -46.02 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -4.47 Total: 21.28 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.65 -7.04 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733147752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.289 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds