Wall clock time and date at job start Tue Mar 31 2020 05:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34294 * 120.00111 * 2 1 4 4 C 1.47380 * 120.00154 * 7.54540 * 3 2 1 5 5 C 1.39825 * 120.12804 * 213.37899 * 4 3 2 6 6 C 1.37960 * 119.97064 * 179.76260 * 5 4 3 7 7 C 1.38265 * 120.23739 * 0.48585 * 6 5 4 8 8 C 1.38984 * 120.26021 * 359.76848 * 7 6 5 9 9 O 1.35767 * 119.99155 * 179.97438 * 8 7 6 10 10 C 1.34834 * 116.99502 * 354.19342 * 9 8 7 11 11 H 1.07999 * 120.00195 * 5.08444 * 10 9 8 12 12 C 1.38654 * 119.99445 * 185.08615 * 10 9 8 13 13 N 1.31556 * 120.00378 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99539 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47255 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46923 * 120.00373 * 14 12 10 17 17 H 1.48502 * 109.46891 * 239.99984 * 14 12 10 18 18 C 1.38596 * 120.02286 * 359.97438 * 8 7 6 19 19 C 1.47299 * 119.99758 * 179.97438 * 2 1 3 20 20 C 1.39902 * 120.14816 * 0.02562 * 19 2 1 21 21 N 1.31891 * 119.82607 * 179.97438 * 20 19 2 22 22 C 1.32279 * 120.12803 * 359.97438 * 21 20 19 23 23 C 1.38436 * 120.29908 * 0.02562 * 22 21 20 24 24 N 1.31997 * 120.17657 * 359.73419 * 23 22 21 25 25 H 1.09003 * 109.47232 * 265.83623 * 1 2 3 26 26 H 1.08998 * 109.47119 * 145.82904 * 1 2 3 27 27 H 1.08998 * 109.47059 * 25.82877 * 1 2 3 28 28 H 1.08003 * 120.00055 * 187.54220 * 3 2 1 29 29 H 1.07996 * 120.01219 * 359.97438 * 5 4 3 30 30 H 1.07994 * 119.87860 * 180.23143 * 6 5 4 31 31 H 1.08000 * 119.87174 * 179.73990 * 7 6 5 32 32 H 0.97001 * 120.00196 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.11983 * 179.97438 * 18 8 7 34 34 H 1.08009 * 120.08727 * 359.95016 * 20 19 2 35 35 H 1.07998 * 119.85318 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.91332 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1785 1.1630 0.0000 4 6 1.4513 2.4339 0.1676 5 6 1.9001 3.5898 -0.4785 6 6 1.2140 4.7766 -0.3233 7 6 0.0883 4.8305 0.4778 8 6 -0.3634 3.6886 1.1287 9 8 -1.4690 3.7478 1.9144 10 6 -2.0112 4.9655 2.1173 11 1 -1.6157 5.8260 1.5981 12 6 -3.0764 5.1130 2.9925 13 7 -3.5585 4.0647 3.6245 14 14 -3.8280 6.8000 3.2730 15 1 -3.1108 7.8049 2.4479 16 1 -5.2614 6.7739 2.8855 17 1 -3.7099 7.1620 4.7084 18 6 0.3146 2.4894 0.9762 19 6 2.2435 -1.2757 0.0006 20 6 1.5471 -2.4890 0.0006 21 7 2.2129 -3.6275 0.0006 22 6 3.5357 -3.6231 0.0001 23 6 4.2301 -2.4255 0.0001 24 7 3.5758 -1.2791 -0.0047 25 1 -0.3634 -0.0746 1.0250 26 1 -0.3633 -0.8502 -0.5772 27 1 -0.3633 0.9250 -0.4477 28 1 3.2516 1.1670 -0.1228 29 1 2.7815 3.5528 -1.1015 30 1 1.5598 5.6677 -0.8260 31 1 -0.4418 5.7636 0.5985 32 1 -4.3035 4.1679 4.2371 33 1 -0.0348 1.6012 1.4816 34 1 0.4670 -2.4934 0.0010 35 1 4.0764 -4.5580 -0.0004 36 1 5.3101 -2.4292 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774132026.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:16 Heat of formation + Delta-G solvation = 62.667899 kcal Electronic energy + Delta-G solvation = -20274.254070 eV Core-core repulsion = 17110.780170 eV Total energy + Delta-G solvation = -3163.473900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05715 -39.17636 -37.11904 -35.35153 -34.07410 -32.33978 -31.51719 -29.35651 -29.19503 -27.06198 -25.43587 -24.63219 -24.18993 -21.75778 -21.24754 -19.21916 -17.75723 -17.35866 -17.10991 -16.73419 -15.96987 -15.11624 -14.91993 -14.75600 -14.46421 -14.17638 -13.76296 -13.66605 -13.23629 -12.97385 -12.56813 -12.33863 -11.99439 -11.77348 -11.67110 -11.43330 -11.41988 -11.31532 -10.96821 -10.75953 -10.63435 -10.45176 -10.02436 -9.38038 -9.17830 -8.94131 -8.77431 -7.71221 -7.22686 -6.48249 -4.07209 0.33047 0.97056 1.71181 2.28629 2.78541 3.11027 3.12044 3.17362 3.74348 3.87307 3.93465 4.15335 4.33929 4.53183 4.66854 4.96838 5.02344 5.10847 5.21447 5.30621 5.32151 5.50370 5.64084 5.74934 5.84273 5.95010 6.05882 6.20824 6.26242 6.32520 6.44642 6.62458 6.72572 6.85917 7.01505 7.18449 7.23570 7.30510 7.37083 7.67546 7.72510 7.96215 8.97522 9.66361 10.69655 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.003432 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.094655 B = 8156.212955 C = 8969.836816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C -0.031 4.031 4 C -0.038 4.038 5 C -0.190 4.190 6 C -0.078 4.078 7 C -0.225 4.225 8 C 0.147 3.853 9 O -0.178 6.178 10 C -0.392 4.392 11 H 0.093 0.907 12 C 0.040 3.960 13 N -0.861 5.861 14 Si 0.940 3.060 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.170 4.170 19 C 0.137 3.863 20 C 0.054 3.946 21 N -0.436 5.436 22 C 0.026 3.974 23 C 0.058 3.942 24 N -0.444 5.444 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.270 0.730 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.297 -8.750 -7.357 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C -0.051 4.051 4 C -0.039 4.039 5 C -0.209 4.209 6 C -0.096 4.096 7 C -0.245 4.245 8 C 0.094 3.906 9 O -0.081 6.081 10 C -0.468 4.468 11 H 0.110 0.890 12 C -0.165 4.165 13 N -0.496 5.496 14 Si 0.765 3.235 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.189 4.189 19 C -0.001 4.001 20 C -0.107 4.107 21 N -0.150 5.150 22 C -0.133 4.133 23 C -0.103 4.103 24 N -0.159 5.159 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.985 -9.016 -7.070 15.873 hybrid contribution -0.177 0.877 0.158 0.909 sum 10.809 -8.139 -6.912 15.194 Atomic orbital electron populations 1.21115 0.90146 1.03477 1.02670 1.20254 0.95289 0.89516 1.06710 1.22177 0.99364 0.90601 0.92979 1.18491 0.94780 0.92532 0.98056 1.20722 1.02276 0.92567 1.05367 1.20677 0.94817 0.96865 0.97290 1.21307 1.00281 0.99509 1.03364 1.19242 0.87431 0.93124 0.90829 1.83985 1.33969 1.32226 1.57948 1.21368 1.14985 0.83936 1.26487 0.89010 1.25281 0.96347 0.99463 0.95380 1.70041 1.24279 1.29238 1.26054 0.85657 0.78993 0.80222 0.78618 1.19103 1.20131 1.20133 1.20657 0.96667 0.97215 1.04391 1.20965 0.89928 0.94769 0.94396 1.23929 1.01961 0.87795 0.97058 1.68379 1.08850 1.29761 1.07985 1.23716 0.91143 0.99740 0.98678 1.23715 1.01783 0.88728 0.96055 1.68573 1.08133 1.29553 1.09598 0.90613 0.92279 0.89435 0.85261 0.87319 0.87249 0.85475 0.92043 0.85374 0.81006 0.81670 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 7.59 36.01 0.27 -1.34 16 2 C -0.12 -1.67 5.93 -102.33 -0.61 -2.27 16 3 C -0.03 -0.48 9.34 -37.25 -0.35 -0.83 16 4 C -0.04 -0.68 5.22 -105.07 -0.55 -1.23 16 5 C -0.19 -3.24 9.79 -39.09 -0.38 -3.62 16 6 C -0.08 -1.40 10.02 -39.67 -0.40 -1.79 16 7 C -0.23 -4.75 9.16 -39.29 -0.36 -5.11 16 8 C 0.15 3.44 6.64 -39.17 -0.26 3.18 16 9 O -0.18 -4.92 9.75 -0.01 0.00 -4.92 16 10 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 11 H 0.09 2.32 5.19 -52.49 -0.27 2.05 16 12 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 13 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 14 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 15 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 C -0.17 -3.45 7.53 -38.94 -0.29 -3.75 16 19 C 0.14 1.86 6.70 -82.95 -0.56 1.30 16 20 C 0.05 0.66 10.55 -16.90 -0.18 0.49 16 21 N -0.44 -5.33 10.48 -12.67 -0.13 -5.46 16 22 C 0.03 0.25 11.21 -17.29 -0.19 0.06 16 23 C 0.06 0.58 11.21 -17.41 -0.20 0.38 16 24 N -0.44 -5.84 9.52 -9.73 -0.09 -5.93 16 25 H 0.08 1.06 6.94 -51.93 -0.36 0.70 16 26 H 0.06 0.66 6.70 -51.93 -0.35 0.31 16 27 H 0.09 1.35 5.96 -51.93 -0.31 1.04 16 28 H 0.13 1.87 7.45 -52.48 -0.39 1.48 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.69 5.62 -52.49 -0.30 2.39 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.13 2.52 5.36 -52.49 -0.28 2.23 16 34 H 0.17 1.79 6.46 -52.48 -0.34 1.46 16 35 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.17 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -31.27 310.43 -7.09 -38.36 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.42 Total: 6.10 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -3.85 Total: -23.96 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.53 Total: -35.42 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: 0.00 Total: -4.92 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.27 -7.09 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774132026.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.029 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds