Wall clock time and date at job start Tue Mar 31 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34301 * 120.00032 * 2 1 4 4 C 1.47379 * 120.00129 * 169.31039 * 3 2 1 5 5 C 1.39812 * 120.12889 * 314.38609 * 4 3 2 6 6 C 1.37963 * 119.97442 * 179.76507 * 5 4 3 7 7 C 1.38271 * 120.23160 * 0.50977 * 6 5 4 8 8 C 1.38982 * 120.26139 * 359.74466 * 7 6 5 9 9 O 1.35760 * 119.98741 * 179.97438 * 8 7 6 10 10 C 1.34834 * 116.99833 * 181.58121 * 9 8 7 11 11 H 1.07997 * 120.00308 * 4.80502 * 10 9 8 12 12 C 1.38658 * 119.99867 * 184.81828 * 10 9 8 13 13 N 1.31551 * 119.99826 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99761 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47239 * 89.99845 * 14 12 10 16 16 H 1.48506 * 109.46953 * 209.99464 * 14 12 10 17 17 H 1.48503 * 109.47430 * 329.99131 * 14 12 10 18 18 C 1.38595 * 120.02339 * 359.97438 * 8 7 6 19 19 C 1.47293 * 119.99952 * 179.97438 * 2 1 3 20 20 C 1.39901 * 120.14872 * 350.69942 * 19 2 1 21 21 N 1.31894 * 119.82347 * 179.97438 * 20 19 2 22 22 C 1.32284 * 120.12924 * 0.02562 * 21 20 19 23 23 C 1.38428 * 120.29968 * 359.97438 * 22 21 20 24 24 N 1.31996 * 120.17526 * 359.74746 * 23 22 21 25 25 H 1.09000 * 109.46762 * 90.00378 * 1 2 3 26 26 H 1.09000 * 109.46957 * 210.00111 * 1 2 3 27 27 H 1.08994 * 109.46864 * 330.00482 * 1 2 3 28 28 H 1.08002 * 119.99770 * 349.58658 * 3 2 1 29 29 H 1.08004 * 120.01262 * 0.02562 * 5 4 3 30 30 H 1.07997 * 119.88525 * 180.23386 * 6 5 4 31 31 H 1.08000 * 119.86261 * 179.72040 * 7 6 5 32 32 H 0.97004 * 119.99986 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.11636 * 179.97438 * 18 8 7 34 34 H 1.08001 * 120.08606 * 359.95384 * 20 19 2 35 35 H 1.08000 * 119.84782 * 180.02562 * 22 21 20 36 36 H 1.07997 * 119.91017 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1786 1.1631 0.0000 4 6 3.6332 1.1742 0.2367 5 6 4.1807 0.4174 1.2771 6 6 5.5433 0.4264 1.4928 7 6 6.3703 1.1900 0.6898 8 6 5.8359 1.9501 -0.3438 9 8 6.6529 2.6982 -1.1285 10 6 6.0675 3.4376 -2.0921 11 1 4.9906 3.4775 -2.1629 12 6 6.8482 4.1464 -2.9926 13 7 8.1599 4.0979 -2.9062 14 14 6.0371 5.1700 -4.3281 15 1 5.8065 6.5478 -3.8244 16 1 6.9222 5.2202 -5.5195 17 1 4.7378 4.5558 -4.7023 18 6 4.4691 1.9445 -0.5737 19 6 2.2435 -1.2756 0.0006 20 6 1.5609 -2.4809 0.1966 21 7 2.2267 -3.6195 0.1954 22 6 3.5364 -3.6226 0.0099 23 6 4.2171 -2.4330 -0.1846 24 7 3.5619 -1.2872 -0.1911 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6519 2.0907 -0.1691 29 1 3.5375 -0.1772 1.9090 30 1 5.9650 -0.1617 2.2945 31 1 7.4357 1.1961 0.8669 32 1 8.7061 4.5941 -3.5359 33 1 4.0522 2.5349 -1.3762 34 1 0.4917 -2.4791 0.3489 35 1 4.0770 -4.5576 0.0094 36 1 5.2864 -2.4429 -0.3358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774132028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:18 Heat of formation + Delta-G solvation = 78.352905 kcal Electronic energy + Delta-G solvation = -21082.274271 eV Core-core repulsion = 17919.480523 eV Total energy + Delta-G solvation = -3162.793748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96835 -38.89917 -36.92782 -35.25121 -33.84492 -32.22801 -31.14491 -30.08170 -28.83236 -26.70543 -25.15212 -24.59154 -24.05052 -21.48527 -21.35150 -19.14650 -17.81891 -17.31949 -17.13136 -16.67270 -15.20754 -15.19235 -14.79021 -14.55041 -14.24074 -14.09565 -13.62424 -13.32983 -13.27214 -13.18919 -12.73681 -12.40659 -12.03564 -11.81482 -11.73347 -11.57181 -11.25096 -11.09343 -10.72181 -10.57808 -10.56736 -10.39801 -9.87370 -9.32309 -9.00322 -8.69659 -8.57989 -7.62298 -6.92278 -6.39093 -3.97539 0.50226 1.19717 1.90400 2.48062 2.80284 3.15589 3.16288 3.20502 3.93467 4.00913 4.08976 4.32269 4.55342 4.68336 4.81188 5.00356 5.17038 5.20841 5.26698 5.36485 5.41055 5.53785 5.57925 5.62603 5.78349 5.85677 5.98240 6.15468 6.31263 6.40795 6.53978 6.61408 6.84161 6.96760 7.14330 7.32955 7.40253 7.45240 7.50038 7.90133 7.93644 8.05927 9.07097 9.79534 10.79483 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020418 B = 0.004689 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.010767 B = 5970.174001 C = 6462.559667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.122 4.122 3 C -0.038 4.038 4 C -0.009 4.009 5 C -0.145 4.145 6 C -0.086 4.086 7 C -0.186 4.186 8 C 0.150 3.850 9 O -0.183 6.183 10 C -0.389 4.389 11 H 0.089 0.911 12 C 0.038 3.962 13 N -0.866 5.866 14 Si 0.938 3.062 15 H -0.274 1.274 16 H -0.278 1.278 17 H -0.269 1.269 18 C -0.206 4.206 19 C 0.121 3.879 20 C 0.043 3.957 21 N -0.444 5.444 22 C 0.031 3.969 23 C 0.056 3.944 24 N -0.392 5.392 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.268 0.732 33 H 0.125 0.875 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 -10.025 5.758 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.123 4.123 3 C -0.057 4.057 4 C -0.010 4.010 5 C -0.165 4.165 6 C -0.105 4.105 7 C -0.206 4.206 8 C 0.097 3.903 9 O -0.087 6.087 10 C -0.466 4.466 11 H 0.107 0.893 12 C -0.165 4.165 13 N -0.501 5.501 14 Si 0.763 3.237 15 H -0.199 1.199 16 H -0.203 1.203 17 H -0.193 1.193 18 C -0.225 4.225 19 C -0.016 4.016 20 C -0.117 4.117 21 N -0.158 5.158 22 C -0.129 4.129 23 C -0.105 4.105 24 N -0.105 5.105 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.142 -9.941 5.606 16.664 hybrid contribution -0.309 0.399 -0.757 0.910 sum -12.451 -9.542 4.849 16.419 Atomic orbital electron populations 1.20713 0.90484 1.02756 1.02376 1.20289 0.94625 0.90182 1.07233 1.22268 0.93694 0.96832 0.92928 1.18380 0.91127 0.96066 0.95383 1.20269 0.94363 1.02010 0.99847 1.20382 0.93085 0.98664 0.98360 1.20169 0.99416 1.02754 0.98226 1.19189 0.89483 0.90566 0.91063 1.84000 1.33193 1.50926 1.40555 1.21262 0.92493 1.24881 1.07927 0.89316 1.25236 0.95411 0.97860 0.98007 1.70036 1.03631 1.40159 1.36300 0.85764 0.78751 0.79640 0.79572 1.19936 1.20327 1.19309 1.21168 0.93263 1.04898 1.03200 1.20932 0.90627 0.94300 0.95751 1.23772 1.01302 0.88351 0.98321 1.68334 1.08710 1.29307 1.09460 1.23704 0.91205 0.99818 0.98143 1.23868 1.02202 0.88585 0.95885 1.69500 1.06785 1.27348 1.06911 0.91320 0.91545 0.91040 0.85560 0.89245 0.87680 0.86959 0.92174 0.85744 0.81822 0.81941 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.73 36.01 0.35 -0.60 16 2 C -0.12 -1.59 5.87 -102.33 -0.60 -2.20 16 3 C -0.04 -0.56 9.39 -37.25 -0.35 -0.91 16 4 C -0.01 -0.17 4.31 -105.08 -0.45 -0.62 16 5 C -0.15 -2.58 6.45 -39.09 -0.25 -2.83 16 6 C -0.09 -1.57 10.02 -39.67 -0.40 -1.96 16 7 C -0.19 -3.96 9.98 -39.29 -0.39 -4.36 16 8 C 0.15 3.64 6.65 -39.17 -0.26 3.38 16 9 O -0.18 -5.26 9.76 0.01 0.00 -5.26 16 10 C -0.39 -10.96 9.47 30.89 0.29 -10.67 16 11 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 12 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 13 N -0.87 -25.64 13.67 55.48 0.76 -24.88 16 14 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 C -0.21 -4.51 8.90 -38.94 -0.35 -4.86 16 19 C 0.12 1.73 5.70 -82.96 -0.47 1.26 16 20 C 0.04 0.53 10.60 -16.90 -0.18 0.36 16 21 N -0.44 -5.81 10.48 -12.67 -0.13 -5.95 16 22 C 0.03 0.36 11.21 -17.29 -0.19 0.17 16 23 C 0.06 0.75 11.21 -17.41 -0.20 0.56 16 24 N -0.39 -6.28 5.45 -9.74 -0.05 -6.33 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.49 6.19 -51.93 -0.32 0.16 16 27 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.09 1.50 7.20 -52.48 -0.38 1.12 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.12 2.77 5.63 -52.49 -0.30 2.47 16 34 H 0.16 1.55 6.22 -52.49 -0.33 1.22 16 35 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.17 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -32.68 310.52 -7.00 -39.68 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.69 Total: 4.65 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -3.55 Total: -22.31 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.57 Total: -37.15 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.68 -7.00 -39.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774132028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.037 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds