Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 S 1.81400 * 109.47402 * 82.06751 * 3 2 1 5 5 C 1.81399 * 103.00257 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47013 * 179.97438 * 5 4 3 7 7 N 1.46505 * 109.47199 * 179.97438 * 6 5 4 8 8 C 1.34770 * 119.99997 * 179.97438 * 7 6 5 9 9 O 1.21583 * 120.00460 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99918 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99942 * 180.27587 * 10 8 7 12 12 C 1.53005 * 109.46942 * 178.21726 * 11 10 8 13 13 C 1.50697 * 115.54927 * 65.12975 * 12 11 10 14 14 H 1.08000 * 119.99825 * 265.41127 * 13 12 11 15 15 C 1.37870 * 120.00191 * 85.40713 * 13 12 11 16 16 N 1.31511 * 120.00139 * 353.55966 * 15 13 12 17 17 Si 1.86796 * 120.00125 * 173.55888 * 15 13 12 18 18 H 1.48501 * 109.46996 * 90.00080 * 17 15 13 19 19 H 1.48505 * 109.47390 * 209.99972 * 17 15 13 20 20 H 1.48503 * 109.47242 * 330.00261 * 17 15 13 21 21 C 1.53005 * 117.49892 * 279.45811 * 12 11 10 22 22 C 1.52995 * 117.49601 * 210.80112 * 12 11 10 23 23 H 4.62830 * 6.06332 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.47597 * 322.06397 * 3 2 1 25 25 H 1.09007 * 109.47218 * 202.06333 * 3 2 1 26 26 H 1.08999 * 109.47233 * 60.00166 * 5 4 3 27 27 H 1.08994 * 109.46710 * 299.99588 * 5 4 3 28 28 H 1.09009 * 109.47181 * 60.00224 * 6 5 4 29 29 H 1.08997 * 109.47575 * 300.00080 * 6 5 4 30 30 H 0.96999 * 119.99285 * 0.02562 * 7 6 5 31 31 H 0.96998 * 119.99939 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47336 * 298.21717 * 11 10 8 33 33 H 1.09001 * 109.46683 * 58.22047 * 11 10 8 34 34 H 0.97003 * 120.00760 * 185.06462 * 16 15 13 35 35 H 1.09006 * 117.49485 * 359.97438 * 21 12 11 36 36 H 1.08992 * 117.49885 * 145.01646 * 21 12 11 37 37 H 1.09009 * 117.49505 * 214.98214 * 22 12 11 38 38 H 1.08997 * 117.50195 * 359.97126 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 16 3.2508 -0.2351 -1.6939 5 6 5.0532 -0.2053 -1.4915 6 6 5.7226 -0.3954 -2.8541 7 7 7.1783 -0.3707 -2.6907 8 6 7.9794 -0.5207 -3.7640 9 8 7.4942 -0.6760 -4.8680 10 7 9.3187 -0.4985 -3.6137 11 6 10.1895 -0.6555 -4.7812 12 6 11.6521 -0.5491 -4.3446 13 6 12.1385 -1.6435 -3.4299 14 1 12.1228 -1.4996 -2.3597 15 6 12.6037 -2.8284 -3.9594 16 7 12.5060 -3.0547 -5.2512 17 14 13.3726 -4.1126 -2.8419 18 1 12.3183 -5.0348 -2.3487 19 1 14.3896 -4.8841 -3.6007 20 1 14.0213 -3.4399 -1.6877 21 6 12.2268 0.8535 -4.1360 22 6 12.6500 0.0255 -5.3519 23 1 -1.0500 -0.0002 0.0000 24 1 3.0097 -0.8096 0.6317 25 1 3.0089 0.9533 0.3860 26 1 5.3571 -1.0103 -0.8224 27 1 5.3554 0.7526 -1.0683 28 1 5.4188 0.4094 -3.5236 29 1 5.4203 -1.3534 -3.2769 30 1 7.5654 -0.2472 -1.8099 31 1 9.7058 -0.3750 -2.7330 32 1 10.0160 -1.6310 -5.2354 33 1 9.9690 0.1276 -5.5068 34 1 12.7652 -3.9163 -5.6138 35 1 11.5631 1.7004 -4.3104 36 1 12.9570 0.9846 -3.3375 37 1 13.6586 -0.3879 -5.3529 38 1 12.2648 0.3272 -6.3259 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797464040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = 41.865876 kcal Electronic energy + Delta-G solvation = -18705.667988 eV Core-core repulsion = 15676.735996 eV Total energy + Delta-G solvation = -3028.931993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.42607 -36.84022 -35.10245 -34.42433 -33.26537 -31.97857 -30.50835 -28.98272 -26.21593 -25.13909 -23.02361 -21.21474 -20.39229 -19.39503 -18.85122 -17.76519 -16.42230 -16.40793 -15.84958 -15.72222 -14.89744 -14.82222 -14.66393 -14.30015 -14.20100 -13.95860 -13.39663 -13.10506 -12.69241 -12.26790 -12.18336 -11.63633 -11.53491 -11.01028 -11.00251 -10.93692 -10.77014 -10.53655 -10.27298 -10.21646 -9.76413 -9.53056 -8.98427 -8.89956 -8.50003 -8.26489 -8.05194 -7.98147 -6.08046 -4.16813 0.83634 2.04106 2.37412 2.77018 3.24663 3.29507 3.32845 3.34107 3.77706 3.82035 4.34300 4.50180 4.61632 4.71200 4.83431 4.86055 5.11661 5.20063 5.35946 5.46767 5.67908 5.80477 6.03167 6.34291 6.47072 6.59597 6.66345 6.69333 6.84747 7.08962 7.12552 7.31062 7.39879 7.46686 7.57478 7.80697 8.33612 8.63118 8.83698 9.17791 9.49834 10.99769 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.002769 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.333102 B =10110.399130 C =10689.788841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.184 4.184 3 C 0.019 3.981 4 S -0.217 6.217 5 C -0.107 4.107 6 C 0.159 3.841 7 N -0.753 5.753 8 C 0.699 3.301 9 O -0.600 6.600 10 N -0.719 5.719 11 C 0.182 3.818 12 C 0.027 3.973 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.073 3.927 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.211 4.211 22 C -0.147 4.147 23 H 0.224 0.776 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.394 0.606 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 6.653 11.468 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.185 4.185 3 C -0.128 4.128 4 S 0.012 5.988 5 C -0.256 4.256 6 C 0.033 3.967 7 N -0.412 5.412 8 C 0.399 3.601 9 O -0.479 6.479 10 N -0.371 5.371 11 C 0.058 3.942 12 C 0.026 3.974 13 C -0.538 4.538 14 H 0.077 0.923 15 C -0.131 4.131 16 N -0.509 5.509 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.248 4.248 22 C -0.186 4.186 23 H 0.241 0.759 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.227 0.773 31 H 0.229 0.771 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.060 6.247 9.295 20.407 hybrid contribution 1.351 -0.556 2.515 2.909 sum -15.709 5.691 11.811 20.461 Atomic orbital electron populations 1.24917 0.95785 0.99938 0.98241 1.21755 0.93033 1.01518 1.02166 1.20144 0.88982 1.06138 0.97526 1.87326 1.03933 1.96458 1.11123 1.23618 0.94036 1.05856 1.02078 1.20613 0.79066 1.03369 0.93633 1.45018 1.05417 1.81048 1.09670 1.15991 0.81848 0.78303 0.84002 1.90887 1.74939 1.57896 1.24227 1.45136 1.03147 1.76273 1.12559 1.20870 0.88438 1.00324 0.84573 1.19050 0.89176 0.90582 0.98565 1.20311 1.42735 0.98818 0.91889 0.92275 1.24989 0.95069 0.98168 0.94863 1.69972 1.46722 1.22927 1.11320 0.86634 0.79315 0.81594 0.80701 1.20697 1.21158 1.19872 1.23020 1.04763 0.95573 1.01431 1.22492 1.00850 1.03318 0.91894 0.75943 0.87628 0.87656 0.88999 0.89071 0.90881 0.90803 0.77279 0.77086 0.91139 0.94666 0.92822 0.91638 0.90406 0.89814 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 19.25 29.55 0.57 -0.65 16 2 C -0.18 -1.59 13.35 -37.12 -0.50 -2.09 16 3 C 0.02 0.14 6.42 34.37 0.22 0.36 16 4 S -0.22 -2.12 21.69 -107.50 -2.33 -4.45 16 5 C -0.11 -0.91 6.05 37.16 0.22 -0.68 16 6 C 0.16 1.95 5.68 -4.04 -0.02 1.93 16 7 N -0.75 -10.29 5.56 -65.22 -0.36 -10.66 16 8 C 0.70 13.34 8.57 -86.92 -0.74 12.59 16 9 O -0.60 -14.00 16.34 5.29 0.09 -13.91 16 10 N -0.72 -13.93 5.48 -65.22 -0.36 -14.28 16 11 C 0.18 4.15 5.50 -4.04 -0.02 4.13 16 12 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 13 C -0.50 -12.73 8.63 -34.44 -0.30 -13.03 16 14 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 16 N -0.87 -24.25 12.91 55.43 0.72 -23.54 16 17 Si 0.89 20.43 29.55 -169.99 -5.02 15.41 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.21 -4.33 9.96 -26.69 -0.27 -4.60 16 22 C -0.15 -3.35 9.42 -26.70 -0.25 -3.60 16 23 H 0.22 0.80 7.80 -54.09 -0.42 0.38 16 24 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.39 4.12 8.49 -40.82 -0.35 3.78 16 31 H 0.40 6.84 8.38 -40.82 -0.34 6.50 16 32 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.08 2.02 8.14 -51.92 -0.42 1.60 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -31.72 350.92 -9.11 -40.83 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.73 Total: 8.69 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.40 Total: -3.38 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.00 Total: -48.48 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.33 Total: -4.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.72 -9.11 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797464040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.695 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds