Wall clock time and date at job start Tue Mar 31 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47358 * 249.35594 * 3 2 1 5 5 C 1.46498 * 120.00163 * 270.00608 * 4 3 2 6 6 C 1.47205 * 109.46936 * 269.99713 * 5 4 3 7 7 N 5.35123 * 150.72420 * 198.78227 * 2 1 3 8 8 C 1.34776 * 119.99645 * 89.99976 * 4 3 2 9 9 O 1.21273 * 120.00343 * 0.02562 * 8 4 3 10 10 C 1.50709 * 119.99828 * 180.02562 * 8 4 3 11 11 C 1.50693 * 109.47068 * 180.02562 * 10 8 4 12 12 C 1.37633 * 120.13043 * 264.99908 * 11 10 8 13 13 C 1.38612 * 120.24991 * 179.97438 * 12 11 10 14 14 C 1.38652 * 120.50416 * 0.02562 * 13 12 11 15 15 C 1.37601 * 120.24646 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12565 * 84.72551 * 11 10 8 17 17 C 1.41394 * 120.24782 * 359.97438 * 16 11 10 18 18 H 1.08007 * 119.99204 * 333.89452 * 17 16 11 19 19 C 1.39936 * 120.00329 * 153.89338 * 17 16 11 20 20 N 1.30823 * 120.00218 * 343.71110 * 19 17 16 21 21 Si 1.86806 * 120.00088 * 163.71342 * 19 17 16 22 22 H 1.48505 * 109.47079 * 90.00193 * 21 19 17 23 23 H 1.48502 * 109.47027 * 209.99966 * 21 19 17 24 24 H 1.48497 * 109.46857 * 330.00048 * 21 19 17 25 25 H 4.40639 * 5.51439 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.46885 * 129.35598 * 3 2 1 27 27 H 1.08998 * 109.47421 * 9.35969 * 3 2 1 28 28 H 1.08998 * 109.47191 * 29.99441 * 5 4 3 29 29 H 1.08999 * 109.47146 * 149.99709 * 5 4 3 30 30 H 1.09002 * 109.46928 * 300.00554 * 10 8 4 31 31 H 1.08997 * 109.46993 * 59.99696 * 10 8 4 32 32 H 1.07998 * 119.87571 * 359.97438 * 12 11 10 33 33 H 1.08004 * 119.74937 * 180.02562 * 13 12 11 34 34 H 1.07996 * 119.87615 * 180.02562 * 14 13 12 35 35 H 1.07999 * 120.12872 * 179.97438 * 15 14 13 36 36 H 0.97001 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4878 1.2925 5 6 3.3776 1.9187 1.4915 6 6 4.7677 2.2355 1.1252 7 7 5.8418 2.4775 0.8425 8 6 3.3592 -0.3804 2.2985 9 8 3.1580 -1.5649 2.1337 10 6 3.8608 0.1208 3.6283 11 6 4.0295 -1.0418 4.5721 12 6 3.0211 -1.3719 5.4488 13 6 3.1734 -2.4412 6.3176 14 6 4.3407 -3.1894 6.3150 15 6 5.3624 -2.8769 5.4479 16 6 5.2162 -1.7976 4.5565 17 6 6.2564 -1.4718 3.6560 18 1 6.0296 -0.9642 2.7300 19 6 7.5796 -1.8068 3.9645 20 7 7.9054 -2.1227 5.1915 21 14 8.8809 -1.8030 2.6242 22 1 9.5027 -0.4570 2.5419 23 1 9.9234 -2.8112 2.9436 24 1 8.2509 -2.1378 1.3218 25 1 -1.0500 0.0001 -0.0001 26 1 3.0090 0.6525 -0.7946 27 1 3.0098 -1.0131 -0.1671 28 1 2.6966 2.4938 0.8643 29 1 3.2105 2.1735 2.5381 30 1 4.8207 0.6187 3.4904 31 1 3.1423 0.8264 4.0452 32 1 2.1078 -0.7957 5.4598 33 1 2.3768 -2.6934 7.0019 34 1 4.4484 -4.0207 6.9960 35 1 6.2710 -3.4607 5.4477 36 1 8.8225 -2.3554 5.4053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798804478.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:21 Heat of formation + Delta-G solvation = 73.154755 kcal Electronic energy + Delta-G solvation = -21222.929989 eV Core-core repulsion = 18059.910833 eV Total energy + Delta-G solvation = -3163.019156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85336 -37.55849 -36.68145 -35.35221 -33.62071 -33.17946 -31.66814 -29.47104 -28.88764 -27.55071 -25.81492 -24.78035 -20.95728 -20.61739 -19.30965 -18.68241 -17.37526 -17.12371 -16.78334 -16.35648 -15.34006 -14.93389 -14.47061 -14.12602 -14.00987 -13.67716 -13.46751 -13.32772 -13.06080 -12.75190 -12.56821 -12.36867 -11.83072 -11.69385 -11.56187 -11.19540 -11.06964 -10.96680 -10.72437 -10.65203 -10.39212 -10.19111 -9.49151 -9.40452 -9.30461 -9.14447 -9.03014 -7.32032 -7.29932 -6.73523 -4.34578 2.15613 2.75420 2.79172 2.82592 2.82996 2.99787 3.08590 3.09406 3.14535 3.28386 3.62309 3.94604 3.95919 4.39090 4.65754 4.83321 4.96810 5.12020 5.36110 5.63457 5.71496 5.89101 5.92798 6.01536 6.26209 6.37052 6.41846 6.50696 6.77455 7.08767 7.28910 7.39120 7.41848 7.52955 7.57474 7.65313 7.91497 8.06130 8.13035 8.31017 8.55829 8.65788 8.91588 9.01046 10.20342 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.012985 B = 0.007001 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.778976 B = 3998.195110 C = 5379.195202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.220 3.780 4 N -0.622 5.622 5 C 0.210 3.790 6 C 0.180 3.820 7 N -0.411 5.411 8 C 0.520 3.480 9 O -0.498 6.498 10 C -0.071 4.071 11 C -0.187 4.187 12 C -0.079 4.079 13 C -0.240 4.240 14 C -0.106 4.106 15 C -0.158 4.158 16 C 0.130 3.870 17 C -0.455 4.455 18 H 0.071 0.929 19 C 0.079 3.921 20 N -0.793 5.793 21 Si 0.898 3.102 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.262 1.262 25 H 0.216 0.784 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 7.904 -6.890 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C 0.098 3.902 4 N -0.359 5.359 5 C 0.083 3.917 6 C -0.140 4.140 7 N -0.088 5.088 8 C 0.310 3.690 9 O -0.368 6.368 10 C -0.110 4.110 11 C -0.188 4.188 12 C -0.097 4.097 13 C -0.259 4.259 14 C -0.124 4.124 15 C -0.178 4.178 16 C 0.127 3.873 17 C -0.484 4.484 18 H 0.089 0.911 19 C -0.138 4.138 20 N -0.419 5.419 21 Si 0.722 3.278 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.186 1.186 25 H 0.233 0.767 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.803 7.498 -7.225 13.011 hybrid contribution 0.077 -0.094 -0.463 0.479 sum -7.727 7.404 -7.688 13.176 Atomic orbital electron populations 1.24899 0.95874 1.01266 0.99163 1.23579 0.94885 1.00197 1.01132 1.18282 0.83559 1.02870 0.85514 1.48172 1.68031 1.06191 1.13481 1.18944 0.84538 0.83139 1.05087 1.29934 0.95784 0.94298 0.93979 1.81247 1.11851 1.07180 1.08547 1.21517 0.75846 0.86101 0.85563 1.90709 1.48473 1.15942 1.81707 1.20358 1.01649 0.98596 0.90430 1.18999 0.98143 0.99871 1.01832 1.20287 0.96140 0.96923 0.96355 1.20301 0.98646 1.01782 1.05180 1.20683 0.94410 0.98493 0.98837 1.21296 0.98452 0.98872 0.99149 1.17329 0.90528 0.88866 0.90537 1.19425 0.90726 1.33874 1.04423 0.91054 1.25838 0.99900 0.92528 0.95562 1.69810 1.20229 1.33352 1.18460 0.86468 0.80144 0.78929 0.82249 1.19426 1.19950 1.18552 0.76727 0.88371 0.87177 0.85975 0.85460 0.88562 0.90073 0.89680 0.89636 0.89571 0.86523 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.20 -2.37 13.68 -37.12 -0.51 -2.88 16 3 C 0.22 2.62 5.88 -6.83 -0.04 2.58 16 4 N -0.62 -8.23 2.39 -180.37 -0.43 -8.66 16 5 C 0.21 1.89 5.69 -6.83 -0.04 1.85 16 6 C 0.18 2.27 15.62 -20.74 -0.32 1.95 16 7 N -0.41 -6.60 18.54 42.18 0.78 -5.82 16 8 C 0.52 9.48 7.27 -10.98 -0.08 9.40 16 9 O -0.50 -11.35 15.61 5.56 0.09 -11.26 16 10 C -0.07 -1.31 3.73 -29.03 -0.11 -1.42 16 11 C -0.19 -4.37 4.43 -103.92 -0.46 -4.83 16 12 C -0.08 -1.77 9.66 -39.66 -0.38 -2.15 16 13 C -0.24 -5.49 10.05 -39.29 -0.39 -5.88 16 14 C -0.11 -2.56 10.02 -39.66 -0.40 -2.95 16 15 C -0.16 -4.21 8.69 -38.87 -0.34 -4.55 16 16 C 0.13 3.44 5.56 -106.82 -0.59 2.85 16 17 C -0.45 -12.06 8.14 -37.75 -0.31 -12.36 16 18 H 0.07 1.87 6.67 -52.48 -0.35 1.52 16 19 C 0.08 2.03 5.16 -17.35 -0.09 1.94 16 20 N -0.79 -20.68 10.96 55.55 0.61 -20.07 16 21 Si 0.90 19.66 29.59 -169.99 -5.03 14.63 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 25 H 0.22 1.52 7.80 -54.09 -0.42 1.10 16 26 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.11 1.53 7.42 -51.93 -0.39 1.14 16 28 H 0.12 0.61 8.07 -51.93 -0.42 0.19 16 29 H 0.13 0.91 6.44 -51.93 -0.33 0.57 16 30 H 0.10 1.82 6.89 -51.93 -0.36 1.46 16 31 H 0.08 1.17 7.31 -51.93 -0.38 0.79 16 32 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.12 3.20 6.21 -52.49 -0.33 2.88 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -33.73 328.60 -6.32 -40.05 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -3.80 Total: 4.12 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.49 Total: -17.95 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.96 Total: -34.55 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.73 -6.32 -40.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798804478.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.208 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds