Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47492 * 2 1 4 4 C 1.53000 * 109.47143 * 120.00697 * 2 1 3 5 5 N 1.46493 * 109.47637 * 64.99269 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.50694 * 109.47248 * 270.27463 * 6 5 4 8 8 H 1.07999 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00385 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99650 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00268 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47383 * 60.00120 * 11 9 7 13 13 H 1.48498 * 109.47096 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46971 * 299.99969 * 11 9 7 15 15 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 16 16 O 1.21279 * 119.99925 * 179.72608 * 15 5 4 17 17 C 1.50700 * 119.99961 * 359.72839 * 15 5 4 18 18 C 1.50697 * 109.47266 * 180.02562 * 17 15 5 19 19 C 1.33638 * 122.75033 * 124.73206 * 18 17 15 20 20 S 1.76203 * 107.92294 * 179.97438 * 19 18 17 21 21 C 1.70978 * 90.28173 * 0.27352 * 20 19 18 22 22 N 1.29030 * 110.16944 * 359.83760 * 21 20 19 23 23 H 1.09002 * 109.46848 * 59.99340 * 1 2 3 24 24 H 1.08993 * 109.47328 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46558 * 299.99697 * 1 2 3 26 26 H 1.09001 * 109.46899 * 239.99978 * 2 1 3 27 27 H 1.09000 * 109.47443 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47159 * 300.00422 * 3 2 1 29 29 H 1.09001 * 109.47066 * 60.00081 * 3 2 1 30 30 H 1.09002 * 109.46747 * 304.99098 * 4 2 1 31 31 H 1.08996 * 109.47074 * 184.99824 * 4 2 1 32 32 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 33 33 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 34 34 H 0.96998 * 120.00151 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46932 * 300.00223 * 17 15 5 36 36 H 1.08997 * 109.47392 * 59.99562 * 17 15 5 37 37 H 1.07997 * 126.03726 * 0.03360 * 19 18 17 38 38 H 1.07998 * 124.91975 * 179.84619 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3773 -2.5670 1.7666 7 6 0.5798 -2.9373 3.2132 8 1 1.5603 -2.8577 3.6588 9 6 -0.4867 -3.3777 3.9680 10 7 -1.6807 -3.4751 3.4251 11 14 -0.2359 -3.8360 5.7613 12 1 0.2688 -2.6558 6.5080 13 1 -1.5284 -4.2761 6.3452 14 1 0.7515 -4.9412 5.8563 15 6 2.4714 -3.0332 0.6114 16 8 2.1528 -4.2025 0.5673 17 6 3.7832 -2.5867 0.0188 18 6 4.5031 -3.7766 -0.5616 19 6 4.9155 -3.8231 -1.8319 20 16 5.7030 -5.3781 -2.0898 21 6 5.3922 -5.8143 -0.4661 22 7 4.7719 -4.8591 0.1403 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6055 -0.2618 2.1369 31 1 3.1263 -0.6445 1.2950 32 1 -0.3476 -1.7559 1.6971 33 1 0.0069 -3.4331 1.2182 34 1 -2.4311 -3.7846 3.9561 35 1 3.5963 -1.8561 -0.7682 36 1 4.3978 -2.1336 0.7966 37 1 4.7893 -3.0446 -2.5697 38 1 5.6743 -6.7534 -0.0135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = 2.420120 kcal Electronic energy + Delta-G solvation = -20283.867366 eV Core-core repulsion = 17253.224877 eV Total energy + Delta-G solvation = -3030.642489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00718 -38.66126 -36.23651 -33.51027 -32.36461 -31.81415 -28.71706 -27.11776 -26.80516 -25.37955 -24.70768 -22.62770 -20.24855 -19.55158 -18.70815 -17.53157 -16.51939 -16.24870 -15.81362 -15.31470 -14.55162 -14.47400 -14.18931 -14.04280 -13.46052 -13.18061 -13.07417 -12.88741 -12.33846 -12.18086 -12.05424 -11.82618 -11.49736 -11.29976 -11.22907 -10.93618 -10.87156 -10.66341 -10.42991 -10.22366 -10.06124 -9.53511 -9.44686 -9.35877 -8.94448 -8.58848 -8.35889 -7.54483 -5.98101 -4.01771 0.83137 1.49341 1.80022 2.97295 3.35962 3.40151 3.43362 3.53950 4.05447 4.34956 4.50665 5.03115 5.05869 5.16424 5.16787 5.28363 5.32195 5.36144 5.52818 5.57823 5.71344 5.82705 5.85189 5.92413 6.11817 6.15873 6.20948 6.23719 6.32341 6.58360 6.71801 7.16751 7.51248 7.64314 7.93776 7.99179 8.31912 8.50877 8.98088 9.20794 9.62879 11.09787 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.005624 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.576134 B = 4977.368522 C = 6552.669626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.245 3.755 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.510 3.490 16 O -0.524 6.524 17 C -0.071 4.071 18 C 0.096 3.904 19 C -0.257 4.257 20 S 0.087 5.913 21 C 0.029 3.971 22 N -0.436 5.436 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.176 0.824 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 5.541 -11.448 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.010 4.010 5 N -0.329 5.329 6 C 0.126 3.874 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.295 3.705 16 O -0.399 6.399 17 C -0.114 4.114 18 C -0.037 4.037 19 C -0.396 4.396 20 S 0.339 5.661 21 C -0.271 4.271 22 N -0.148 5.148 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.193 0.807 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 13.302 4.256 -11.676 18.203 hybrid contribution -0.397 0.437 1.405 1.524 sum 12.905 4.693 -10.271 17.148 Atomic orbital electron populations 1.21924 0.94614 1.03097 1.00932 1.21596 0.97158 0.95756 0.98863 1.21784 1.00514 0.96052 1.01789 1.21542 0.98952 0.82547 0.97948 1.48171 1.21953 1.06125 1.56660 1.19353 0.78731 0.96238 0.93078 1.21435 0.94999 1.44256 0.95543 0.92604 1.24911 0.95065 0.95471 0.98614 1.69919 0.99846 1.47213 1.36603 0.86592 0.77301 0.78964 0.84768 1.20301 1.21250 1.20223 1.19934 0.84904 0.86293 0.79356 1.90696 1.74353 1.17127 1.57754 1.20397 0.95505 0.94073 1.01446 1.19806 0.99284 0.94662 0.89908 1.26724 1.10009 1.02130 1.00742 1.83810 1.55003 1.11263 1.16074 1.28429 1.01513 1.02966 0.94146 1.66053 1.11136 1.00181 1.37456 0.93688 0.91253 0.92504 0.91692 0.92913 0.92889 0.92465 0.89933 0.91787 0.94233 0.94239 0.92784 0.88084 0.87813 0.80711 0.78624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.19 37.16 0.30 -1.93 16 2 C -0.11 -1.52 3.12 -90.62 -0.28 -1.80 16 3 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 4 C 0.11 1.83 4.70 -4.05 -0.02 1.81 16 5 N -0.60 -12.58 2.28 -175.07 -0.40 -12.98 16 6 C 0.24 6.40 4.24 -5.20 -0.02 6.38 16 7 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 11 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.51 10.89 7.64 -10.98 -0.08 10.81 16 16 O -0.52 -13.81 15.02 5.56 0.08 -13.72 16 17 C -0.07 -1.11 4.75 -29.04 -0.14 -1.24 16 18 C 0.10 1.54 5.64 -84.23 -0.47 1.06 16 19 C -0.26 -3.26 11.07 29.12 0.32 -2.94 16 20 S 0.09 0.97 23.22 -107.50 -2.50 -1.53 16 21 C 0.03 0.40 12.23 51.59 0.63 1.03 16 22 N -0.44 -7.77 9.68 -11.90 -0.12 -7.89 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.26 5.91 -51.93 -0.31 0.95 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 32 H 0.04 1.03 6.00 -51.93 -0.31 0.71 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.10 1.22 7.13 -51.93 -0.37 0.85 16 36 H 0.10 1.45 7.39 -51.93 -0.38 1.06 16 37 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.20 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 328.55 15.07 4.95 4.95 Total: -1.00 -35.33 328.55 -7.50 -42.83 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.39 Total: -1.05 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 0.16 Total: -1.72 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.22 Total: -47.10 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.33 -7.50 -42.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.247 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds