Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47430 * 2 1 4 4 H 1.08997 * 109.47657 * 185.15541 * 3 2 1 5 5 C 1.50701 * 109.47124 * 305.16091 * 3 2 1 6 6 H 1.07995 * 120.00668 * 119.99454 * 5 3 2 7 7 C 1.37876 * 119.99602 * 299.99881 * 5 3 2 8 8 N 1.31514 * 120.00429 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99779 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46936 * 60.00159 * 9 7 5 11 11 H 1.48509 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47340 * 299.99674 * 9 7 5 13 13 N 1.46901 * 109.47123 * 65.15641 * 3 2 1 14 14 C 1.46904 * 111.00196 * 85.90402 * 13 3 2 15 15 C 1.50695 * 109.47291 * 174.80897 * 14 13 3 16 16 C 1.38266 * 119.99075 * 89.99725 * 15 14 13 17 17 C 1.38220 * 120.05417 * 179.74576 * 16 15 14 18 18 C 1.38220 * 120.02281 * 0.25442 * 17 16 15 19 19 N 1.48005 * 120.01195 * 179.97438 * 18 17 16 20 20 O 1.21795 * 119.99926 * 0.02562 * 19 18 17 21 21 O 1.21798 * 119.99862 * 179.97438 * 19 18 17 22 22 C 1.38433 * 119.97620 * 0.02562 * 18 17 16 23 23 F 1.35100 * 120.02926 * 180.02562 * 22 18 17 24 24 C 1.38179 * 119.98615 * 270.25506 * 15 14 13 25 25 H 1.09002 * 109.47719 * 174.84910 * 1 2 3 26 26 H 1.09007 * 109.47462 * 294.85044 * 1 2 3 27 27 H 1.09000 * 109.46938 * 54.85026 * 1 2 3 28 28 H 1.08998 * 109.47409 * 239.99596 * 2 1 3 29 29 H 1.09003 * 109.46702 * 119.99672 * 2 1 3 30 30 H 0.96996 * 120.00351 * 180.02562 * 8 7 5 31 31 H 1.00905 * 111.00433 * 321.94460 * 13 3 2 32 32 H 1.08995 * 109.46633 * 54.80194 * 14 13 3 33 33 H 1.09003 * 109.46524 * 294.80415 * 14 13 3 34 34 H 1.07998 * 119.97001 * 0.02562 * 16 15 14 35 35 H 1.07996 * 119.98932 * 180.27974 * 17 16 15 36 36 H 1.08000 * 120.01527 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0923 5 6 1.4361 2.1889 -1.1616 6 1 0.8269 3.0627 -0.9840 7 6 1.6612 1.7559 -2.4511 8 7 2.4034 0.6920 -2.6675 9 14 0.9120 2.6807 -3.8910 10 1 1.4066 4.0809 -3.8911 11 1 1.3012 2.0175 -5.1615 12 1 -0.5675 2.6782 -3.7649 13 7 1.6547 2.0981 1.2568 14 6 2.6432 1.8368 2.3116 15 6 2.2832 2.6257 3.5441 16 6 1.4558 2.0707 4.5028 17 6 1.1290 2.7911 5.6362 18 6 1.6249 4.0695 5.8100 19 7 1.2744 4.8410 7.0235 20 8 0.5492 4.3491 7.8694 21 8 1.7119 5.9673 7.1765 22 6 2.4488 4.6285 4.8481 23 9 2.9345 5.8778 5.0171 24 6 2.7759 3.9056 3.7131 25 1 -0.3634 -1.0235 -0.0923 26 1 -0.3634 0.4319 0.9325 27 1 -0.3633 0.5916 -0.8403 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 2.5621 0.3876 -3.5747 31 1 0.7319 1.8105 1.5467 32 1 3.6322 2.1358 1.9647 33 1 2.6478 0.7731 2.5497 34 1 1.0682 1.0717 4.3680 35 1 0.4863 2.3549 6.3865 36 1 3.4185 4.3407 2.9621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846979496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = -27.377340 kcal Electronic energy + Delta-G solvation = -21587.273605 eV Core-core repulsion = 17989.125825 eV Total energy + Delta-G solvation = -3598.147780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.40569 -42.20615 -39.69502 -36.75912 -36.62121 -33.69878 -31.91331 -31.20928 -30.37358 -27.63393 -26.08347 -24.14202 -23.49619 -23.37205 -21.72894 -19.56341 -19.53155 -18.81748 -17.72067 -17.40302 -16.81534 -16.26445 -15.97781 -15.32588 -15.00224 -14.72764 -14.43410 -13.91431 -13.66283 -13.19682 -12.77904 -12.62116 -12.39529 -12.28944 -11.91859 -11.69450 -11.61871 -11.22747 -11.21629 -10.99605 -10.83871 -10.67794 -10.16900 -10.07988 -9.76093 -9.62765 -9.36226 -9.18573 -8.47941 -7.55828 -6.11493 -4.13987 -0.36146 0.60461 1.15208 1.21602 2.93440 3.25980 3.31108 3.34215 3.44042 4.04429 4.22302 4.33895 4.47802 4.72149 5.00338 5.17341 5.20632 5.22630 5.29961 5.51515 5.60991 5.81492 6.01625 6.08776 6.16864 6.20584 6.32248 6.39113 6.69533 7.01322 7.06825 7.35374 7.49879 7.52167 7.71210 8.06286 8.23587 8.38262 8.90837 9.50370 10.95371 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027277 B = 0.003595 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.264698 B = 7787.733447 C = 8261.491889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.083 3.917 15 C 0.020 3.980 16 C -0.127 4.127 17 C -0.029 4.029 18 C -0.097 4.097 19 N 0.035 4.965 20 O -0.165 6.165 21 O -0.156 6.156 22 C 0.171 3.829 23 F -0.105 7.105 24 C -0.137 4.137 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.011 0.989 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 0.604 13.263 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.047 4.047 15 C 0.019 3.981 16 C -0.147 4.147 17 C -0.048 4.048 18 C -0.182 4.182 19 N 0.553 4.447 20 O -0.379 6.379 21 O -0.372 6.372 22 C 0.150 3.850 23 F -0.083 7.083 24 C -0.156 4.156 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.169 0.831 35 H 0.177 0.823 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.396 0.782 12.344 12.375 hybrid contribution -0.602 -0.089 -0.279 0.669 sum -0.205 0.692 12.065 12.086 Atomic orbital electron populations 1.21609 0.97541 0.98904 1.00810 1.22127 0.95139 1.00872 1.00472 1.19281 0.96232 0.88729 0.84820 0.94627 1.20968 1.31042 1.11724 0.89510 0.91979 1.24898 0.95390 0.95109 0.98768 1.69850 1.38652 1.23855 1.21060 0.86605 0.79584 0.80005 0.81499 1.20263 1.21421 1.20319 1.60953 1.03473 1.63445 1.02946 1.21112 0.98922 0.95911 0.88726 1.20486 0.90016 0.92699 0.94902 1.21242 0.99108 1.01597 0.92709 1.20936 0.95799 0.89844 0.98230 1.21205 1.10694 0.96409 0.89879 1.43364 0.98835 1.00908 1.01566 1.94519 1.33401 1.72922 1.37020 1.94600 1.55402 1.03599 1.83561 1.17394 0.93138 0.80972 0.93493 1.91658 1.85005 1.36595 1.95073 1.21263 1.03559 0.94723 0.96104 0.95596 0.95483 0.91089 0.88654 0.97027 0.92883 0.85093 0.89458 0.93847 0.83068 0.82264 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.40 37.15 0.35 -2.15 16 2 C -0.15 -3.03 5.51 -26.73 -0.15 -3.18 16 3 C 0.22 4.71 2.33 -68.86 -0.16 4.55 16 4 H 0.04 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.49 -12.27 7.25 -34.44 -0.25 -12.52 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -23.66 11.38 55.43 0.63 -23.03 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.68 -11.90 6.19 -109.22 -0.68 -12.58 16 14 C 0.08 1.13 5.63 -4.98 -0.03 1.10 16 15 C 0.02 0.23 5.44 -104.64 -0.57 -0.34 16 16 C -0.13 -1.24 9.70 -39.58 -0.38 -1.62 16 17 C -0.03 -0.29 9.55 -39.59 -0.38 -0.67 16 18 C -0.10 -1.23 6.86 -79.89 -0.55 -1.77 16 19 N 0.03 0.51 4.45 33.99 0.15 0.66 16 20 O -0.16 -2.36 18.45 -29.46 -0.54 -2.91 16 21 O -0.16 -2.45 17.42 -29.46 -0.51 -2.97 16 22 C 0.17 2.18 7.25 -39.42 -0.29 1.89 16 23 F -0.11 -1.46 15.48 2.25 0.03 -1.42 16 24 C -0.14 -1.61 9.68 -39.51 -0.38 -1.99 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.45 6.63 -51.93 -0.34 0.10 16 27 H 0.07 1.53 6.85 -51.93 -0.36 1.17 16 28 H 0.10 2.28 6.23 -51.93 -0.32 1.96 16 29 H 0.01 0.21 7.50 -51.93 -0.39 -0.18 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.33 5.55 6.69 -39.29 -0.26 5.29 16 32 H 0.09 1.21 7.87 -51.93 -0.41 0.80 16 33 H 0.04 0.56 7.48 -51.93 -0.39 0.17 16 34 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.16 1.29 7.61 -52.49 -0.40 0.89 16 36 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -26.97 313.08 -8.18 -35.15 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.09 Total: 2.42 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.88 Total: -15.29 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.11 Total: -34.95 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -1.06 Total: -5.87 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.03 Total: -1.42 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.97 -8.18 -35.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846979496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.771 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds