Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38263 * 119.99268 * 90.00131 * 15 14 13 17 17 C 1.38225 * 120.05532 * 179.97438 * 16 15 14 18 18 C 1.38218 * 120.02331 * 359.97438 * 17 16 15 19 19 N 1.48007 * 120.01071 * 179.97438 * 18 17 16 20 20 O 1.21797 * 119.99949 * 0.02562 * 19 18 17 21 21 O 1.21798 * 120.00074 * 180.02562 * 19 18 17 22 22 C 1.38431 * 119.97635 * 0.02562 * 18 17 16 23 23 F 1.35100 * 120.03022 * 180.02562 * 22 18 17 24 24 C 1.38183 * 119.98690 * 269.72095 * 15 14 13 25 25 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 26 26 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 27 27 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 28 28 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 29 29 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 30 30 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 31 31 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 32 32 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 33 33 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 34 34 H 1.08005 * 119.97360 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.98600 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.00538 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7966 3.7432 -3.8159 17 6 2.4725 4.4644 -4.9497 18 6 1.5565 3.9586 -5.8528 19 7 1.2092 4.7314 -7.0664 20 8 1.7310 5.8130 -7.2696 21 8 0.4017 4.2857 -7.8618 22 6 0.9632 2.7295 -5.6212 23 9 0.0681 2.2338 -6.5034 24 6 1.2923 2.0057 -4.4874 25 1 -0.3633 0.5896 0.8417 26 1 -0.3633 0.4342 -0.9314 27 1 -0.3633 -1.0237 0.0898 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.0722 0.4283 1.9219 31 1 0.6931 1.8857 -1.4926 32 1 3.5861 1.9537 -2.0570 33 1 2.4645 0.6641 -2.5543 34 1 3.5127 4.1390 -3.1110 35 1 2.9358 5.4232 -5.1303 36 1 0.8332 1.0447 -4.3077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846979498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = -30.256994 kcal Electronic energy + Delta-G solvation = -21638.312139 eV Core-core repulsion = 18040.039488 eV Total energy + Delta-G solvation = -3598.272651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.49405 -42.24469 -39.76026 -37.04328 -36.66256 -33.89168 -31.93613 -31.27205 -30.47900 -27.66560 -25.76909 -24.06228 -23.76383 -23.49071 -21.80200 -19.74430 -19.60029 -18.85246 -17.76235 -17.66048 -16.88305 -16.71896 -16.06147 -15.38623 -15.08976 -14.73687 -14.33445 -13.79011 -13.59527 -13.47548 -13.05476 -12.84050 -12.59603 -12.14735 -11.98378 -11.71940 -11.65951 -11.31317 -11.26128 -11.17865 -10.86466 -10.49304 -10.28220 -10.16965 -10.05849 -9.79087 -9.40197 -8.82203 -8.38900 -7.68114 -6.43709 -4.15418 -0.40961 0.54305 1.10408 1.17159 2.88201 3.36651 3.38275 3.38706 3.57605 3.95751 4.18457 4.40931 4.45371 4.65060 4.91907 4.97485 5.20511 5.23691 5.29946 5.44513 5.50844 5.69486 5.89369 5.94887 5.98592 6.03154 6.13575 6.27241 6.47497 6.73855 6.81875 7.02996 7.14383 7.48388 7.60955 7.99111 8.16898 8.45878 8.76744 9.52937 10.92415 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.003556 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.132078 B = 7871.067601 C = 8233.296186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C 0.205 3.795 4 H 0.030 0.970 5 C -0.575 4.575 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.081 3.919 15 C 0.019 3.981 16 C -0.108 4.108 17 C -0.029 4.029 18 C -0.095 4.095 19 N 0.035 4.965 20 O -0.162 6.162 21 O -0.156 6.156 22 C 0.171 3.829 23 F -0.106 7.106 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.029 0.971 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.269 0.731 31 H 0.332 0.668 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 1.826 -13.316 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.097 3.903 4 H 0.048 0.952 5 C -0.613 4.613 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.299 5.299 14 C -0.049 4.049 15 C 0.018 3.982 16 C -0.127 4.127 17 C -0.048 4.048 18 C -0.180 4.180 19 N 0.553 4.447 20 O -0.376 6.376 21 O -0.372 6.372 22 C 0.150 3.850 23 F -0.084 7.084 24 C -0.176 4.176 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.265 2.099 -10.951 11.154 hybrid contribution -0.565 -0.972 -2.397 2.648 sum -0.300 1.128 -13.349 13.400 Atomic orbital electron populations 1.21604 0.96626 0.99375 1.01418 1.22290 0.96312 1.01209 0.99662 1.19407 0.95922 0.88527 0.86462 0.95183 1.21758 1.30375 1.18310 0.90888 0.92571 1.25722 0.95651 0.96966 1.00027 1.70837 1.24354 1.24270 1.35603 0.83563 0.75570 0.75643 0.75736 1.20893 1.21435 1.21473 1.60899 1.04850 1.62342 1.01832 1.21130 0.99683 0.95565 0.88482 1.20437 0.90109 0.93598 0.94052 1.21259 1.01326 0.93812 0.96283 1.21028 0.92221 1.00517 0.91024 1.21214 1.09124 0.95494 0.92198 1.43358 0.99163 1.00651 1.01521 1.94527 1.54232 1.07823 1.81035 1.94597 1.28271 1.72977 1.41365 1.17305 0.88595 0.90182 0.88875 1.91656 1.63829 1.86666 1.66244 1.21230 1.01185 1.02264 0.92929 0.90706 0.94993 0.95143 0.95994 0.91207 0.91942 0.84907 0.89336 0.94006 0.82495 0.82078 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.38 37.16 0.35 -2.13 16 2 C -0.15 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.20 4.42 1.95 -68.86 -0.13 4.28 16 4 H 0.03 0.72 7.32 -51.93 -0.38 0.34 16 5 C -0.57 -14.41 7.18 -34.44 -0.25 -14.65 16 6 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 7 C 0.02 0.53 5.29 -17.82 -0.09 0.44 16 8 N -0.91 -25.30 13.21 55.43 0.73 -24.57 16 9 Si 1.07 23.67 29.91 -169.99 -5.08 18.58 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.67 -11.79 6.18 -109.22 -0.67 -12.46 16 14 C 0.08 1.10 5.61 -4.98 -0.03 1.07 16 15 C 0.02 0.22 5.43 -104.63 -0.57 -0.35 16 16 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 17 C -0.03 -0.30 9.55 -39.59 -0.38 -0.68 16 18 C -0.10 -1.20 6.86 -79.89 -0.55 -1.75 16 19 N 0.03 0.50 4.45 33.99 0.15 0.65 16 20 O -0.16 -2.32 18.45 -29.46 -0.54 -2.86 16 21 O -0.16 -2.43 17.42 -29.46 -0.51 -2.95 16 22 C 0.17 2.11 7.25 -39.42 -0.29 1.82 16 23 F -0.11 -1.40 15.48 2.25 0.03 -1.37 16 24 C -0.16 -1.72 9.68 -39.51 -0.38 -2.10 16 25 H 0.07 1.58 6.88 -51.93 -0.36 1.22 16 26 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.39 7.13 -51.93 -0.37 0.02 16 29 H 0.07 1.59 6.17 -51.93 -0.32 1.27 16 30 H 0.27 7.31 5.62 -40.82 -0.23 7.08 16 31 H 0.33 5.69 6.79 -39.29 -0.27 5.42 16 32 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 33 H 0.04 0.54 7.14 -51.93 -0.37 0.17 16 34 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.16 1.36 7.61 -52.48 -0.40 0.96 16 36 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -28.04 311.06 -7.98 -36.02 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.92 Total: 3.08 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -2.85 Total: -18.82 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.21 Total: -36.38 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -1.06 Total: -5.81 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.03 Total: -1.37 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.58 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.04 -7.98 -36.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846979498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.762 kcal (2) G-P(sol) polarization free energy of solvation -28.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds