Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38263 * 119.99268 * 90.00131 * 15 14 13 17 17 C 1.38225 * 120.05532 * 179.97438 * 16 15 14 18 18 C 1.38218 * 120.02331 * 359.97438 * 17 16 15 19 19 N 1.48007 * 120.01071 * 179.97438 * 18 17 16 20 20 O 1.21797 * 119.99949 * 0.02562 * 19 18 17 21 21 O 1.21798 * 120.00074 * 180.02562 * 19 18 17 22 22 C 1.38431 * 119.97635 * 0.02562 * 18 17 16 23 23 F 1.35100 * 120.03022 * 180.02562 * 22 18 17 24 24 C 1.38183 * 119.98690 * 269.72095 * 15 14 13 25 25 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 26 26 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 27 27 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 28 28 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 29 29 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 30 30 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 31 31 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 32 32 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 33 33 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 34 34 H 1.08005 * 119.97360 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.98600 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.00538 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7966 3.7432 -3.8159 17 6 2.4725 4.4644 -4.9497 18 6 1.5565 3.9586 -5.8528 19 7 1.2092 4.7314 -7.0664 20 8 1.7310 5.8130 -7.2696 21 8 0.4017 4.2857 -7.8618 22 6 0.9632 2.7295 -5.6212 23 9 0.0681 2.2338 -6.5034 24 6 1.2923 2.0057 -4.4874 25 1 -0.3633 0.5896 0.8417 26 1 -0.3633 0.4342 -0.9314 27 1 -0.3633 -1.0237 0.0898 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.0722 0.4283 1.9219 31 1 0.6931 1.8857 -1.4926 32 1 3.5861 1.9537 -2.0570 33 1 2.4645 0.6641 -2.5543 34 1 3.5127 4.1390 -3.1110 35 1 2.9358 5.4232 -5.1303 36 1 0.8332 1.0447 -4.3077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846979498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = -45.314464 kcal Electronic energy + Delta-G solvation = -21638.965080 eV Core-core repulsion = 18040.039488 eV Total energy + Delta-G solvation = -3598.925592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.46180 -43.31934 -40.71640 -38.55424 -37.77024 -35.27385 -33.48004 -32.19959 -31.83133 -28.95499 -27.30570 -25.59005 -25.15658 -24.40316 -22.84379 -21.40362 -20.61035 -19.92832 -19.04539 -18.82966 -18.27457 -17.70146 -17.05221 -16.68719 -16.17934 -15.82758 -15.59802 -15.49640 -15.00634 -14.70752 -14.34530 -14.16451 -13.73235 -13.40502 -13.23259 -12.92657 -12.85724 -12.80695 -12.59778 -12.40228 -12.31004 -12.03624 -11.93469 -11.89886 -11.67062 -10.78557 -10.62459 -10.33920 -10.27954 -9.12186 -8.46824 -6.18280 -1.43955 -0.31405 0.06778 0.16174 1.58588 1.63383 1.82198 1.97841 2.45181 2.61627 3.04277 3.25068 3.28876 3.52581 3.70314 3.77889 4.05234 4.21294 4.32392 4.36594 4.40292 4.48051 4.56833 4.61942 4.69737 4.93758 5.00238 5.07016 5.15133 5.22749 5.31304 5.41084 5.57368 5.93686 6.22957 6.34903 6.53914 6.66137 6.80399 7.56444 8.90469 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.003556 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.132078 B = 7871.067601 C = 8233.296186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.148 4.148 3 C 0.209 3.791 4 H 0.005 0.995 5 C -0.574 4.574 6 H 0.045 0.955 7 C -0.025 4.025 8 N -0.943 5.943 9 Si 1.103 2.897 10 H -0.291 1.291 11 H -0.277 1.277 12 H -0.274 1.274 13 N -0.674 5.674 14 C 0.085 3.915 15 C 0.017 3.983 16 C -0.099 4.099 17 C -0.019 4.019 18 C -0.104 4.104 19 N 0.034 4.966 20 O -0.152 6.152 21 O -0.195 6.195 22 C 0.160 3.840 23 F -0.115 7.115 24 C -0.145 4.145 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.337 0.663 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 2.201 -13.840 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.188 4.188 3 C 0.100 3.900 4 H 0.023 0.977 5 C -0.613 4.613 6 H 0.064 0.936 7 C -0.223 4.223 8 N -0.582 5.582 9 Si 0.927 3.073 10 H -0.217 1.217 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.305 5.305 14 C -0.044 4.044 15 C 0.016 3.984 16 C -0.119 4.119 17 C -0.037 4.037 18 C -0.189 4.189 19 N 0.549 4.451 20 O -0.371 6.371 21 O -0.402 6.402 22 C 0.139 3.861 23 F -0.093 7.093 24 C -0.164 4.164 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.192 0.808 35 H 0.201 0.799 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.070 2.443 -11.539 11.795 hybrid contribution -0.451 -1.040 -2.266 2.534 sum -0.380 1.403 -13.805 13.882 Atomic orbital electron populations 1.21525 0.95358 1.00157 1.01420 1.22150 0.97347 0.99946 0.99320 1.19132 0.94078 0.89292 0.87462 0.97678 1.22046 1.29367 1.17706 0.92187 0.93648 1.26773 0.95771 0.97101 1.02704 1.70923 1.26075 1.25801 1.35435 0.83075 0.75529 0.75452 0.73202 1.21699 1.20274 1.19979 1.60680 1.05770 1.62295 1.01788 1.21093 0.98807 0.96665 0.87852 1.20256 0.90781 0.93948 0.93406 1.21460 1.00982 0.93166 0.96246 1.21262 0.91191 1.01159 0.90128 1.21442 1.10045 0.95668 0.91792 1.43617 0.98854 1.00684 1.01950 1.94498 1.53573 1.07978 1.81076 1.94602 1.29620 1.73431 1.42554 1.17453 0.88945 0.90432 0.89291 1.91634 1.64229 1.86791 1.66647 1.21333 1.00486 1.02628 0.91973 0.93579 0.92566 0.93469 0.93410 0.94391 0.92736 0.84411 0.89267 0.92765 0.80838 0.79913 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.38 71.98 0.68 -3.84 16 2 C -0.15 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.21 8.87 1.95 44.17 0.09 8.96 16 4 H 0.01 0.25 7.32 -2.39 -0.02 0.24 16 5 C -0.57 -28.64 7.18 25.60 0.18 -28.46 16 6 H 0.05 2.32 7.82 -2.91 -0.02 2.30 16 7 C -0.02 -1.31 5.29 84.65 0.45 -0.86 16 8 N -0.94 -53.00 13.21 21.44 0.28 -52.72 16 9 Si 1.10 47.53 29.91 68.60 2.05 49.58 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 13 N -0.67 -22.41 6.18 -499.47 -3.09 -25.49 16 14 C 0.08 2.07 5.61 85.56 0.48 2.55 16 15 C 0.02 0.35 5.43 -19.87 -0.11 0.24 16 16 C -0.10 -1.75 9.70 22.27 0.22 -1.54 16 17 C -0.02 -0.33 9.55 22.26 0.21 -0.12 16 18 C -0.10 -2.43 6.86 36.42 0.25 -2.18 16 19 N 0.03 0.94 4.45 -46.37 -0.21 0.73 16 20 O -0.15 -4.12 18.45 18.89 0.35 -3.78 16 21 O -0.19 -6.06 17.42 18.89 0.33 -5.73 16 22 C 0.16 3.64 7.25 22.37 0.16 3.80 16 23 F -0.11 -2.94 15.48 44.97 0.70 -2.24 16 24 C -0.14 -2.79 9.68 22.31 0.22 -2.58 16 25 H 0.05 1.89 6.88 -2.39 -0.02 1.88 16 26 H 0.06 1.69 6.68 -2.39 -0.02 1.68 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.60 7.13 -2.39 -0.02 1.58 16 29 H 0.04 1.73 6.17 -2.39 -0.01 1.71 16 30 H 0.26 14.56 5.62 -92.71 -0.52 14.04 16 31 H 0.34 10.65 6.79 -89.69 -0.61 10.04 16 32 H 0.09 2.21 7.89 -2.39 -0.02 2.19 16 33 H 0.05 1.23 7.14 -2.39 -0.02 1.21 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.18 2.47 7.61 -2.91 -0.02 2.44 16 36 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -60.59 311.06 4.17 -56.42 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.76 Total: 12.84 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 2.99 Total: -29.63 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.01 Total: -77.48 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.68 Total: -9.50 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.70 Total: -2.24 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.05 Total: 49.58 kcal Total: -60.59 4.17 -56.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846979498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.110 kcal (2) G-P(sol) polarization free energy of solvation -60.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds