Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46769 * 2 1 4 4 H 1.09003 * 109.47607 * 54.99673 * 3 2 1 5 5 C 1.53000 * 109.47095 * 174.99638 * 3 2 1 6 6 O 1.42898 * 109.47126 * 294.99523 * 3 2 1 7 7 C 1.35554 * 117.00419 * 150.00029 * 6 3 2 8 8 C 1.38878 * 120.46343 * 179.97438 * 7 6 3 9 9 C 1.39321 * 118.27911 * 180.02562 * 8 7 6 10 10 S 1.76197 * 120.49971 * 179.97438 * 9 8 7 11 11 C 1.81008 * 99.99812 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47018 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00045 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99669 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00298 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99640 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46919 * 90.00597 * 16 14 12 18 18 H 1.48497 * 109.47114 * 210.00243 * 16 14 12 19 19 H 1.48500 * 109.47196 * 330.00346 * 16 14 12 20 20 N 1.33214 * 118.99265 * 359.97438 * 9 8 7 21 21 C 1.31699 * 120.82871 * 0.02562 * 20 9 8 22 22 C 1.50699 * 119.05291 * 180.02562 * 21 20 9 23 23 N 1.31784 * 121.89863 * 0.02562 * 21 20 9 24 24 H 1.08997 * 109.47673 * 299.99972 * 1 2 3 25 25 H 1.09002 * 109.47238 * 60.00535 * 1 2 3 26 26 H 1.09006 * 109.46770 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47673 * 240.00027 * 2 1 3 28 28 H 1.09002 * 109.47238 * 119.99465 * 2 1 3 29 29 H 1.08997 * 109.46891 * 60.00028 * 5 3 2 30 30 H 1.09005 * 109.46932 * 179.97438 * 5 3 2 31 31 H 1.08998 * 109.47535 * 300.00059 * 5 3 2 32 32 H 1.07997 * 120.86047 * 359.97438 * 8 7 6 33 33 H 1.08999 * 109.46844 * 299.99732 * 11 10 9 34 34 H 1.08995 * 109.46552 * 60.00187 * 11 10 9 35 35 H 0.96994 * 119.99810 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.46861 * 270.01760 * 22 21 20 37 37 H 1.08993 * 109.47489 * 30.01602 * 22 21 20 38 38 H 1.09007 * 109.47368 * 150.02100 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4445 0.1258 6 8 1.6619 2.0814 -1.2211 7 6 1.4506 3.4196 -1.1759 8 6 1.0811 4.1131 -2.3209 9 6 0.8762 5.4877 -2.2228 10 16 0.4067 6.4252 -3.6388 11 6 0.2977 8.0747 -2.9016 12 6 -0.1013 9.0720 -3.9586 13 1 -0.2724 8.7441 -4.9733 14 6 -0.2488 10.4029 -3.6301 15 7 -0.0409 10.8022 -2.3944 16 14 -0.7427 11.6392 -4.9405 17 1 -2.2232 11.7436 -4.9896 18 1 -0.1635 12.9665 -4.6122 19 1 -0.2340 11.1901 -6.2615 20 7 1.0405 6.0823 -1.0421 21 6 1.3918 5.3878 0.0203 22 6 1.5660 6.1012 1.3363 23 7 1.5954 4.0869 -0.0342 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9994 0.9054 -0.7160 30 1 3.9280 2.4722 0.1254 31 1 3.8531 0.9572 1.0572 32 1 0.9567 3.6004 -3.2632 33 1 -0.4484 8.0689 -2.1070 34 1 1.2671 8.3525 -2.4879 35 1 -0.1451 11.7384 -2.1632 36 1 2.5983 6.4376 1.4333 37 1 0.8983 6.9618 1.3742 38 1 1.3276 5.4200 2.1532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858568341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -16.787374 kcal Electronic energy + Delta-G solvation = -19417.715971 eV Core-core repulsion = 16386.240583 eV Total energy + Delta-G solvation = -3031.475388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87402 -38.81365 -34.60272 -33.22306 -33.08996 -31.97820 -30.13594 -28.69207 -28.13689 -24.78535 -23.83656 -23.15220 -22.31762 -21.20300 -18.51205 -17.63060 -16.59652 -15.90918 -15.66660 -15.18345 -14.83923 -14.65642 -14.51359 -14.16296 -13.66739 -13.34705 -13.19971 -12.77315 -12.67844 -12.39245 -12.34921 -12.18839 -12.00857 -11.92284 -11.33740 -11.09071 -10.98875 -10.88264 -10.80145 -10.53072 -10.38665 -10.16389 -9.65197 -9.25417 -8.95991 -8.86779 -8.63301 -7.02379 -6.20869 -4.28069 1.18487 1.45340 2.11949 3.00581 3.24444 3.30396 3.32541 3.47385 3.97819 4.13124 4.32717 4.52276 4.63004 4.74678 4.90363 5.15777 5.17165 5.23380 5.34645 5.38359 5.48452 5.51885 5.67602 5.69724 5.72073 5.73866 5.75773 5.91723 5.97733 6.07336 6.09151 6.44494 7.08988 7.13562 7.24730 7.38635 7.68747 7.94164 8.39650 8.73175 9.35465 10.89544 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033363 B = 0.003530 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.054952 B = 7930.335097 C = 8393.036298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.091 0.909 5 C -0.168 4.168 6 O -0.295 6.295 7 C 0.373 3.627 8 C -0.250 4.250 9 C 0.196 3.804 10 S -0.075 6.075 11 C 0.076 3.924 12 C -0.527 4.527 13 H 0.066 0.934 14 C 0.070 3.930 15 N -0.883 5.883 16 Si 0.906 3.094 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 N -0.533 5.533 21 C 0.366 3.634 22 C -0.083 4.083 23 N -0.594 5.594 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 -17.694 7.085 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.027 3.973 4 H 0.109 0.891 5 C -0.226 4.226 6 O -0.201 6.201 7 C 0.186 3.814 8 C -0.282 4.282 9 C -0.057 4.057 10 S 0.168 5.832 11 C -0.071 4.071 12 C -0.567 4.567 13 H 0.084 0.916 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 N -0.256 5.256 21 C 0.095 3.905 22 C -0.142 4.142 23 N -0.328 5.328 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.870 -17.563 6.581 19.151 hybrid contribution -0.026 0.601 0.052 0.604 sum 3.844 -16.962 6.633 18.614 Atomic orbital electron populations 1.21764 0.95190 1.01724 1.02485 1.21682 0.96822 0.94260 1.03006 1.22441 0.95273 0.93045 0.86539 0.89084 1.22207 0.95043 1.03026 1.02298 1.86275 1.81962 1.15892 1.35923 1.19705 0.87833 0.84337 0.89477 1.21310 1.13477 0.93889 0.99478 1.23858 0.91295 0.93198 0.97384 1.85763 1.79765 1.09208 1.08505 1.21289 1.02225 0.85075 0.98545 1.20687 1.49185 0.91705 0.95135 0.91568 1.24935 0.94723 0.97971 0.95848 1.69972 1.47624 1.16793 1.17656 0.86371 0.78835 0.80090 0.81473 1.20295 1.20898 1.19534 1.68860 1.19242 1.39064 0.98443 1.22924 0.87525 0.85109 0.94979 1.20556 1.03805 1.00020 0.89773 1.67821 1.26303 1.11267 1.27451 0.92749 0.92066 0.92495 0.90967 0.90089 0.92048 0.91852 0.91154 0.83390 0.92932 0.92925 0.92402 0.89693 0.89151 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.81 37.16 0.36 -1.04 16 2 C -0.12 -1.05 5.64 -26.73 -0.15 -1.20 16 3 C 0.08 0.94 2.50 -26.73 -0.07 0.87 16 4 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 5 C -0.17 -1.68 9.53 37.16 0.35 -1.32 16 6 O -0.29 -4.20 9.31 -18.36 -0.17 -4.37 16 7 C 0.37 6.16 7.48 -16.79 -0.13 6.03 16 8 C -0.25 -4.41 9.89 -38.94 -0.39 -4.79 16 9 C 0.20 3.97 7.00 -16.55 -0.12 3.85 16 10 S -0.08 -1.63 22.01 -107.50 -2.37 -4.00 16 11 C 0.08 1.97 4.63 36.01 0.17 2.14 16 12 C -0.53 -14.58 9.13 -34.44 -0.31 -14.89 16 13 H 0.07 1.79 7.71 -52.49 -0.40 1.39 16 14 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 15 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 16 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.53 -10.97 9.20 -9.59 -0.09 -11.06 16 21 C 0.37 6.41 7.64 -157.29 -1.20 5.21 16 22 C -0.08 -1.12 10.32 36.00 0.37 -0.75 16 23 N -0.59 -9.81 8.70 -10.87 -0.09 -9.90 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.05 1.46 8.14 -51.92 -0.42 1.04 16 34 H 0.05 1.46 8.14 -51.92 -0.42 1.04 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -29.76 339.00 -8.90 -38.66 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.81 Total: -1.63 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.20 Total: -4.04 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.55 Total: -45.70 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.17 Total: -4.37 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.37 Total: -4.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.76 -8.90 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858568341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.874 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds