Wall clock time and date at job start Tue Mar 31 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47448 * 2 1 4 4 H 1.08998 * 109.46862 * 305.00378 * 3 2 1 5 5 C 1.52997 * 109.47482 * 184.99813 * 3 2 1 6 6 O 1.42905 * 109.46980 * 64.99505 * 3 2 1 7 7 C 1.35550 * 116.99884 * 209.99977 * 6 3 2 8 8 C 1.38883 * 120.46027 * 179.72077 * 7 6 3 9 9 C 1.39318 * 118.28081 * 179.80628 * 8 7 6 10 10 S 1.76204 * 120.50275 * 180.24169 * 9 8 7 11 11 C 1.81001 * 99.99961 * 180.23359 * 10 9 8 12 12 C 1.50695 * 109.47055 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99952 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00161 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46917 * 90.00290 * 16 14 12 18 18 H 1.48501 * 109.47114 * 210.00230 * 16 14 12 19 19 H 1.48501 * 109.47367 * 330.00225 * 16 14 12 20 20 N 1.33217 * 118.99493 * 0.47464 * 9 8 7 21 21 C 1.31713 * 120.82284 * 359.74393 * 20 9 8 22 22 C 1.50700 * 119.04613 * 180.02562 * 21 20 9 23 23 N 1.31779 * 121.89582 * 0.02801 * 21 20 9 24 24 H 1.09007 * 109.46964 * 60.00529 * 1 2 3 25 25 H 1.09004 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47346 * 300.00002 * 1 2 3 27 27 H 1.09001 * 109.47166 * 239.99233 * 2 1 3 28 28 H 1.09004 * 109.46717 * 120.00185 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 31 31 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 32 32 H 1.08005 * 120.86239 * 0.02562 * 8 7 6 33 33 H 1.09000 * 109.47107 * 300.00513 * 11 10 9 34 34 H 1.09004 * 109.46758 * 59.99723 * 11 10 9 35 35 H 0.97004 * 120.00283 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47054 * 270.01801 * 22 21 20 37 37 H 1.09001 * 109.47338 * 30.02579 * 22 21 20 38 38 H 1.09005 * 109.46716 * 150.02505 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5648 1.4442 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4508 3.4195 1.1756 8 6 1.0750 4.1122 2.3192 9 6 0.8740 5.4874 2.2218 10 16 0.4025 6.4248 3.6374 11 6 0.2938 8.0743 2.9001 12 6 -0.1079 9.0711 3.9563 13 1 -0.2801 8.7431 4.9708 14 6 -0.2557 10.4020 3.6276 15 7 -0.6058 11.2721 4.5495 16 14 0.0428 10.9694 1.8731 17 1 -1.2267 10.8955 1.1062 18 1 0.5343 12.3707 1.8829 19 1 1.0581 10.0932 1.2354 20 7 1.0391 6.0821 1.0413 21 6 1.3918 5.3876 -0.0208 22 6 1.5679 6.1013 -1.3364 23 7 1.5952 4.0867 0.0339 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 3.8532 0.9569 -1.0570 30 1 3.9994 0.9052 0.7162 31 1 3.9282 2.4719 -0.1261 32 1 0.9455 3.5987 3.2605 33 1 1.2636 8.3524 2.4874 34 1 -0.4512 8.0682 2.1044 35 1 -0.7094 12.2084 4.3184 36 1 0.6203 6.1096 -1.8749 37 1 1.8909 7.1261 -1.1534 38 1 2.3200 5.5842 -1.9324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858568342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:58 Heat of formation + Delta-G solvation = -12.854696 kcal Electronic energy + Delta-G solvation = -19508.037561 eV Core-core repulsion = 16476.732706 eV Total energy + Delta-G solvation = -3031.304855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98827 -38.90975 -34.67671 -33.27003 -33.09120 -32.09755 -30.19733 -29.45177 -28.33375 -24.87723 -23.84976 -23.01264 -22.17946 -21.24463 -18.59896 -17.75697 -16.97101 -16.01340 -15.91967 -15.28475 -14.94060 -14.61532 -14.43951 -14.09638 -13.83057 -13.43718 -13.29384 -13.16948 -12.98515 -12.53804 -12.40022 -12.33672 -12.12584 -12.02015 -11.39314 -11.17886 -11.06780 -10.86530 -10.78936 -10.53195 -10.27397 -10.21182 -9.88692 -9.34472 -9.10364 -8.98278 -8.74832 -7.16851 -6.23006 -4.27451 1.06302 1.32541 1.97967 2.90882 3.16408 3.25168 3.33865 3.37000 3.84777 4.00889 4.30714 4.46386 4.49274 4.68779 4.84598 5.10090 5.11052 5.13450 5.28018 5.32767 5.38125 5.43013 5.56474 5.57470 5.64041 5.65392 5.68333 5.83664 5.89887 5.95236 6.03074 6.32025 6.68638 6.72447 6.97380 7.27748 7.35588 8.20404 8.25630 8.74686 9.32626 10.88385 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029819 B = 0.003919 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.768426 B = 7142.565534 C = 7697.772058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.091 0.909 5 C -0.168 4.168 6 O -0.294 6.294 7 C 0.375 3.625 8 C -0.247 4.247 9 C 0.189 3.811 10 S -0.034 6.034 11 C 0.030 3.970 12 C -0.528 4.528 13 H 0.083 0.917 14 C 0.084 3.916 15 N -0.889 5.889 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.259 1.259 20 N -0.541 5.541 21 C 0.366 3.634 22 C -0.084 4.084 23 N -0.593 5.593 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.269 0.731 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -19.358 -12.104 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.027 3.973 4 H 0.109 0.891 5 C -0.226 4.226 6 O -0.199 6.199 7 C 0.189 3.811 8 C -0.279 4.279 9 C -0.065 4.065 10 S 0.210 5.790 11 C -0.118 4.118 12 C -0.567 4.567 13 H 0.101 0.899 14 C -0.121 4.121 15 N -0.526 5.526 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.183 1.183 20 N -0.265 5.265 21 C 0.095 3.905 22 C -0.142 4.142 23 N -0.327 5.327 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.271 -19.193 -11.430 22.952 hybrid contribution 0.280 0.330 -1.465 1.528 sum 5.551 -18.863 -12.895 23.514 Atomic orbital electron populations 1.21766 0.95167 1.01786 1.02458 1.21684 0.96840 0.94197 1.03072 1.22457 0.95314 0.93096 0.86437 0.89087 1.22209 0.94985 1.03017 1.02377 1.86285 1.81850 1.15777 1.36003 1.19708 0.87589 0.84404 0.89420 1.21303 1.13113 0.93779 0.99683 1.23987 0.91476 0.93497 0.97504 1.85878 1.79488 1.06565 1.07104 1.21643 1.01491 0.89337 0.99310 1.20481 1.49102 0.91049 0.96025 0.89904 1.24812 0.93763 0.95933 0.97577 1.69862 1.46200 1.03067 1.33475 0.86801 0.79650 0.78380 0.84908 1.19792 1.20893 1.18285 1.68823 1.19789 1.39313 0.98578 1.22891 0.87563 0.85213 0.94867 1.20563 1.03428 1.00233 0.90020 1.67817 1.26323 1.11143 1.27422 0.92764 0.92442 0.92068 0.90047 0.90914 0.91115 0.91977 0.91878 0.83189 0.93008 0.93485 0.92105 0.89637 0.89403 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.16 0.36 -0.97 16 2 C -0.12 -0.99 5.64 -26.74 -0.15 -1.14 16 3 C 0.08 0.88 2.50 -26.74 -0.07 0.82 16 4 H 0.09 1.04 7.01 -51.93 -0.36 0.68 16 5 C -0.17 -1.58 9.53 37.16 0.35 -1.23 16 6 O -0.29 -3.98 9.31 -18.34 -0.17 -4.15 16 7 C 0.37 5.87 7.48 -16.79 -0.13 5.75 16 8 C -0.25 -4.13 9.89 -38.94 -0.39 -4.51 16 9 C 0.19 3.60 7.00 -16.55 -0.12 3.48 16 10 S -0.03 -0.70 22.01 -107.50 -2.37 -3.06 16 11 C 0.03 0.74 3.69 36.00 0.13 0.87 16 12 C -0.53 -14.76 9.68 -34.44 -0.33 -15.10 16 13 H 0.08 2.49 7.95 -52.49 -0.42 2.08 16 14 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 15 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 16 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 20 N -0.54 -10.41 9.20 -9.59 -0.09 -10.50 16 21 C 0.37 5.98 7.64 -157.28 -1.20 4.78 16 22 C -0.08 -1.02 10.32 36.01 0.37 -0.65 16 23 N -0.59 -9.23 8.70 -10.87 -0.09 -9.32 16 24 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.15 2.23 8.06 -52.48 -0.42 1.80 16 33 H 0.05 1.27 7.19 -51.92 -0.37 0.90 16 34 H 0.05 1.14 7.56 -51.91 -0.39 0.75 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -30.43 335.40 -8.59 -39.01 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.77 Total: -2.01 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.25 Total: -5.60 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.59 Total: -45.57 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.17 Total: -4.15 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -2.37 Total: -3.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.43 -8.59 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858568342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.158 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds