Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46736 * 195.80057 * 3 2 1 5 5 C 1.52999 * 109.47436 * 64.99967 * 4 3 2 6 6 C 1.47195 * 109.46980 * 184.99658 * 5 4 3 7 7 C 5.34093 * 115.14395 * 210.39402 * 2 1 3 8 8 C 1.50701 * 109.46689 * 184.99954 * 4 3 2 9 9 O 1.21279 * 120.00226 * 359.97438 * 8 4 3 10 10 N 1.34780 * 120.00061 * 179.97438 * 8 4 3 11 11 C 1.39259 * 120.00051 * 174.71952 * 10 8 4 12 12 C 1.39674 * 119.57701 * 185.10648 * 11 10 8 13 13 C 1.38653 * 119.50079 * 179.74389 * 12 11 10 14 14 C 1.38346 * 118.66574 * 0.52368 * 13 12 11 15 15 C 1.40573 * 119.13154 * 359.74007 * 14 13 12 16 16 C 1.41342 * 119.79266 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99184 * 359.97438 * 16 15 14 18 18 C 1.40025 * 120.00316 * 179.97438 * 16 15 14 19 19 N 1.30742 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47350 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47220 * 120.00097 * 20 18 16 23 23 H 1.48508 * 109.47218 * 240.00345 * 20 18 16 24 24 N 1.31903 * 119.57887 * 5.37862 * 11 10 8 25 25 H 4.44650 * 5.63391 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46813 * 75.79985 * 3 2 1 27 27 H 1.08999 * 109.47125 * 315.79450 * 3 2 1 28 28 H 1.09004 * 109.46958 * 304.99338 * 4 3 2 29 29 H 1.09001 * 109.46828 * 304.99733 * 5 4 3 30 30 H 1.09000 * 109.46940 * 64.99995 * 5 4 3 31 31 H 6.34559 * 113.63463 * 207.53989 * 2 1 3 32 32 H 0.97000 * 119.99771 * 354.71528 * 10 8 4 33 33 H 1.08004 * 120.24591 * 0.02562 * 12 11 10 34 34 H 1.08003 * 120.66947 * 180.26431 * 13 12 11 35 35 H 1.08002 * 120.43389 * 179.76910 * 14 13 12 36 36 H 0.97001 * 119.99605 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3889 0.3928 5 6 2.7505 1.6910 1.8370 6 6 3.1348 3.0709 2.1759 7 6 3.4434 4.1704 2.4462 8 6 4.6573 1.4250 0.2741 9 8 5.2609 0.4376 -0.0884 10 7 5.3297 2.5548 0.5709 11 6 6.7223 2.5573 0.5679 12 6 7.4106 3.7007 0.9800 13 6 8.7971 3.6997 0.9815 14 6 9.4603 2.5607 0.5609 15 6 8.7108 1.4438 0.1526 16 6 9.3740 0.2727 -0.2792 17 1 10.4534 0.2383 -0.2950 18 6 8.6318 -0.8426 -0.6864 19 7 7.3252 -0.8006 -0.6677 20 14 9.5085 -2.3905 -1.2564 21 1 10.9771 -2.1826 -1.1845 22 1 9.1255 -3.5272 -0.3808 23 1 9.1198 -2.6921 -2.6576 24 7 7.3745 1.4818 0.1707 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0095 -0.2513 -0.9963 27 1 3.0097 -0.7358 0.7165 28 1 2.7204 2.1366 -0.2706 29 1 1.6715 1.5779 1.9430 30 1 3.2564 0.9976 2.5088 31 1 3.7180 5.1546 2.6879 32 1 4.8437 3.3661 0.7865 33 1 6.8667 4.5774 1.2995 34 1 9.3483 4.5719 1.3005 35 1 10.5398 2.5300 0.5470 36 1 6.8111 -1.5731 -0.9501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = 124.752681 kcal Electronic energy + Delta-G solvation = -21305.034397 eV Core-core repulsion = 18144.252695 eV Total energy + Delta-G solvation = -3160.781702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65359 -37.79777 -35.64719 -34.38755 -33.50400 -32.77417 -31.25741 -30.27573 -28.97729 -27.46528 -25.59086 -24.02945 -21.69388 -20.99805 -19.19095 -18.26043 -18.05425 -17.60845 -16.28946 -16.10490 -15.16179 -14.72190 -14.47306 -14.28068 -13.88235 -13.50099 -13.43856 -13.30306 -12.90379 -12.52760 -12.39104 -12.02198 -11.87287 -11.46420 -11.14466 -10.92805 -10.61982 -10.54116 -10.41419 -10.16044 -10.09759 -9.90784 -9.86574 -9.61499 -8.99321 -8.90788 -7.94093 -7.19050 -6.92560 -6.12388 -4.37893 2.71184 2.77894 2.85352 2.86816 2.90113 3.08382 3.18702 3.22074 3.27996 3.73716 3.85453 4.07690 4.34311 4.48287 4.92209 5.04800 5.12982 5.17497 5.52439 5.69767 5.76394 5.96886 6.03421 6.06216 6.10552 6.14367 6.18843 6.51781 6.71986 6.86224 6.88022 7.25867 7.57832 7.61609 7.62520 7.65786 7.83479 8.09728 8.22301 8.50171 8.76107 9.07247 9.27258 10.26885 10.49914 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.006363 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.997464 B = 4399.054950 C = 6170.949073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.171 4.171 3 C 0.004 3.996 4 C -0.098 4.098 5 C -0.005 4.005 6 C -0.182 4.182 7 C -0.205 4.205 8 C 0.475 3.525 9 O -0.407 6.407 10 N -0.664 5.664 11 C 0.372 3.628 12 C -0.356 4.356 13 C -0.037 4.037 14 C -0.306 4.306 15 C 0.271 3.729 16 C -0.426 4.426 17 H 0.082 0.918 18 C 0.059 3.941 19 N -0.656 5.656 20 Si 0.895 3.105 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.473 5.473 25 H 0.215 0.785 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.219 0.781 32 H 0.399 0.601 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.480 3.442 2.685 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.171 4.171 3 C -0.033 4.033 4 C -0.120 4.120 5 C -0.042 4.042 6 C -0.183 4.183 7 C -0.223 4.223 8 C 0.256 3.744 9 O -0.270 6.270 10 N -0.313 5.313 11 C 0.133 3.867 12 C -0.382 4.382 13 C -0.061 4.061 14 C -0.329 4.329 15 C 0.146 3.854 16 C -0.457 4.457 17 H 0.100 0.900 18 C -0.170 4.170 19 N -0.275 5.275 20 Si 0.719 3.281 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.201 1.201 24 N -0.192 5.192 25 H 0.231 0.769 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.235 0.765 32 H 0.236 0.764 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.720 1.747 2.083 12.032 hybrid contribution 0.377 0.874 0.255 0.985 sum -11.344 2.621 2.338 11.875 Atomic orbital electron populations 1.24808 0.95822 1.01265 1.02344 1.23226 0.94476 0.99942 0.99450 1.18538 0.83652 0.96237 1.04897 1.21364 0.94903 0.98680 0.97016 1.18754 1.01942 0.87917 0.95570 1.22981 0.99856 0.95034 1.00384 1.24891 1.00625 0.96825 0.99914 1.20472 0.88320 0.84884 0.80759 1.91153 1.67343 1.31601 1.36943 1.43685 1.04935 1.13232 1.69415 1.18662 0.83288 0.91495 0.93260 1.20491 0.94570 0.99065 1.24027 1.20555 0.93288 0.96335 0.95898 1.21621 0.98604 0.96549 1.16136 1.18401 0.87010 0.91636 0.88375 1.19608 0.94107 0.95635 1.36312 0.89978 1.26165 0.95088 0.99935 0.95843 1.70336 1.04657 1.27824 1.24662 0.86475 0.80788 0.81955 0.78837 1.18646 1.20072 1.20085 1.68714 1.08300 1.21916 1.20249 0.76856 0.87876 0.88344 0.88701 0.88763 0.88834 0.76455 0.76392 0.89265 0.88687 0.88613 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.40 19.25 29.55 0.57 -1.83 16 2 C -0.17 -2.12 12.23 -37.12 -0.45 -2.57 16 3 C 0.00 0.05 4.53 -29.51 -0.13 -0.09 16 4 C -0.10 -1.40 2.24 -91.77 -0.21 -1.61 16 5 C -0.01 -0.07 5.06 -29.52 -0.15 -0.21 16 6 C -0.18 -2.43 11.13 -37.13 -0.41 -2.84 16 7 C -0.21 -2.47 17.93 29.55 0.53 -1.94 16 8 C 0.47 9.44 7.10 -10.98 -0.08 9.36 16 9 O -0.41 -9.83 11.69 5.56 0.07 -9.76 16 10 N -0.66 -13.56 4.83 -11.40 -0.06 -13.61 16 11 C 0.37 9.23 7.43 -154.99 -1.15 8.08 16 12 C -0.36 -8.17 9.95 -38.89 -0.39 -8.56 16 13 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 14 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 15 C 0.27 7.66 6.55 -85.00 -0.56 7.11 16 16 C -0.43 -11.76 9.14 -37.73 -0.34 -12.10 16 17 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 18 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 19 N -0.66 -17.93 8.99 55.55 0.50 -17.43 16 20 Si 0.89 19.21 29.56 -169.99 -5.02 14.19 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 N -0.47 -13.31 5.74 -10.26 -0.06 -13.37 16 25 H 0.21 1.50 7.80 -54.08 -0.42 1.08 16 26 H 0.10 1.51 7.96 -51.93 -0.41 1.09 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.02 7.23 -51.93 -0.38 0.64 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.22 1.90 7.80 -54.09 -0.42 1.48 16 32 H 0.40 6.88 5.46 -40.82 -0.22 6.66 16 33 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.27 6.88 8.29 -40.82 -0.34 6.55 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -32.61 321.16 -7.32 -39.93 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -3.94 Total: 10.39 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.65 Total: -15.18 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.39 Total: -44.41 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.61 -7.32 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.687 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds